reversecommand.h

   1 #ifndef REVERSECOMMAND_H
   2 #define REVERSECOMMAND_H
   3
   4 /*
   5  *  reversecommand.h
   6  *  Mothur
   7  *
   8  *  Created by Pat Schloss on 6/6/09.
   9  *  Copyright 2009 Patrick D. Schloss. All rights reserved.
  10  *
  11  */
  12
  13 #include "command.hpp"
  14
  15 class ReverseSeqsCommand : public Command {
  16 public:
  17         ReverseSeqsCommand(string);
  18         ReverseSeqsCommand();
  19         ~ReverseSeqsCommand();
  20         vector<string> getRequiredParameters();
  21         vector<string> getValidParameters();
  22         vector<string> getRequiredFiles();
  23         map<string, vector<string> > getOutputFiles() { return outputTypes; }
  24         int execute();
  25         void help();
  26
  27 private:
  28
  29         bool abort;
  30         string fasta, outputDir;
  31         vector<string> outputNames;
  32         map<string, vector<string> > outputTypes;
  33
  34 };
  35
  36 #endif