readmatrix.hpp

   1 #ifndef READMATRIX_HPP
   2 #define READMATRIX_HPP
   3
   4 /*
   5  *  readmatrix.hpp
   6  *
   7  *
   8  *  Created by Pat Schloss on 8/13/08.
   9  *  Copyright 2008 Patrick D. Schloss. All rights reserved.
  10  *
  11  */
  12
  13 #include "mothur.h"
  14 #include "listvector.hpp"
  15 #include "sparsematrix.hpp"
  16 #include "nameassignment.hpp"
  17 #include "globaldata.hpp"
  18
  19 class SparseMatrix;
  20
  21 class ReadMatrix {
  22
  23 public:
  24         ReadMatrix(){   D = new SparseMatrix(); }
  25         virtual ~ReadMatrix() {}
  26         virtual void read(NameAssignment*){};
  27         virtual void read(GlobalData* globaldata){};
  28         void setCutoff(float c)                 {       cutoff = c;             }
  29         SparseMatrix* getMatrix()               {       return D;               }
  30         ListVector* getListVector()             {       return list;    }
  31 //      OrderVector* getOrderVector()   {       return order;   }
  32
  33         int successOpen;
  34
  35 protected:
  36         SparseMatrix* D;
  37         ListVector* list;
  38         GlobalData* globaldata;
  39         float cutoff;
  40 };
  41
  42
  43
  44 #endif