readlistfilecommand.h

   1 #ifndef READLISTFILECOMMAND_H
   2 #define READLISTFILECOMMAND_H
   3 /*
   4  *  readlistfilecommand.h
   5  *  Dotur
   6  *
   7  *  Created by Sarah Westcott on 1/2/09.
   8  *  Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
   9  *
  10  */
  11
  12 #include <Carbon/Carbon.h>
  13 #include <iostream>
  14 #include <fstream>
  15 #include "command.hpp"
  16 #include "readmatrix.hpp"
  17 #include "inputdata.h"
  18
  19 /* The read.list command parameter options are listfile and orderfile.
  20 The read.list command should be in the following format:
  21 read.list(listfile=yourListFile, orderfile=yourOrderFile). The listfile parameter is required. */
  22
  23 class GlobalData;
  24
  25 class ReadListFileCommand : public Command {
  26 public:
  27         ReadListFileCommand();
  28         ~ReadListFileCommand();
  29         int execute();
  30
  31 private:
  32         GlobalData* globaldata;
  33         ReadMatrix* read;
  34         InputData* input;
  35         string filename;
  36 };
  37
  38 #endif