1 #ifndef READDISTCOLUMNFILECOMMAND_H
2 #define READDISTCOLUMNFILECOMMAND_H
4 * readdistcolumnfilecommand.h
7 * Created by Sarah Westcott on 1/2/09.
8 * Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
12 #include <Carbon/Carbon.h>
15 #include "command.hpp"
16 #include "readmatrix.hpp"
18 /* The read.column command is used to read a distance matrix file in column format.
19 The read.column command parameter options are distfile, namefile, cutoff and precision.
20 The read.column command should be in the following format: read.column (distfile=yourDistFile,
21 namefile=yourNameFile, cutoff=yourCutoff, precision=yourPrecision). The distfile and namefile parameters are required.
22 If you do not provide a cutoff value 10.00 is assumed. If you do not provide a precision value then 100 is assumed. */
28 class ReadDistColumnFileCommand : public Command {
30 ReadDistColumnFileCommand();
31 ~ReadDistColumnFileCommand();
35 GlobalData* globaldata;
39 string filename, format, method;
40 NameAssignment* nameMap;