parsefastaqcommand.h

   1 #ifndef PARSEFASTAQCOMMAND_H
   2 #define PARSEFASTAQCOMMAND_H
   3
   4 /*
   5  *  parsefastaqcommand.h
   6  *  Mothur
   7  *
   8  *  Created by westcott on 9/30/10.
   9  *  Copyright 2010 Schloss Lab. All rights reserved.
  10  *
  11  */
  12
  13
  14 #include "command.hpp"
  15
  16 class ParseFastaQCommand : public Command {
  17
  18 public:
  19         ParseFastaQCommand(string);
  20         ~ParseFastaQCommand();
  21         int execute();
  22         void help();
  23
  24 private:
  25
  26         vector<string> outputNames;
  27         string outputDir, fastaQFile;
  28         bool abort;
  29
  30         vector<int> convertQual(string);
  31 };
  32
  33 #endif
  34
  35