nameassignment.cpp

   1
   2
   3 #include "nameassignment.hpp"
   4
   5 //**********************************************************************************************************************
   6
   7 NameAssignment::NameAssignment(string nameMapFile){
   8         m = MothurOut::getInstance();
   9         openInputFile(nameMapFile, fileHandle);
  10
  11 }
  12
  13 //**********************************************************************************************************************
  14
  15 void NameAssignment::readMap(){
  16         try{
  17                 string firstCol, secondCol, skip;
  18         //      int index = 0;
  19
  20
  21 //              map<string, string> data;
  22                 int rowIndex = 0;
  23
  24                 while(fileHandle){
  25                         fileHandle >> firstCol;                         //read from first column
  26                         fileHandle >> secondCol;                        //read from second column
  27
  28 //                      data[firstCol] = secondCol;                     //store data in map
  29
  30                         list.push_back(secondCol);              //adds data's value to list
  31                         reverse[rowIndex] = firstCol;
  32                         (*this)[firstCol] = rowIndex++;
  33                         gobble(fileHandle);
  34                 }
  35                 fileHandle.close();
  36
  37         }
  38         catch(exception& e) {
  39                 m->errorOut(e, "NameAssignment", "readMap");
  40                 exit(1);
  41         }
  42 }
  43 //**********************************************************************************************************************
  44 void NameAssignment::push_back(string name) {
  45         try{
  46
  47                 int num = (*this).size();
  48                 (*this)[name] = num;
  49                 reverse[num] = name;
  50
  51                 list.push_back(name);
  52         }
  53         catch(exception& e) {
  54                 m->errorOut(e, "NameAssignment", "push_back");
  55                 exit(1);
  56         }
  57 }
  58
  59 //**********************************************************************************************************************
  60
  61 ListVector NameAssignment::getListVector(void){
  62
  63         return list;
  64
  65 }
  66
  67 //**********************************************************************************************************************
  68
  69 void NameAssignment::print(ostream& out){
  70         try {
  71                 map<string,int>::iterator it;
  72 //cout << (*this).size() << endl;
  73                 for(it = (*this).begin(); it!=(*this).end(); it++){
  74                         out << it->first << '\t' <<  it->second << endl;  //prints out keys and values of the map this.
  75                 }
  76         }
  77         catch(exception& e) {
  78                 m->errorOut(e, "NameAssignment", "print");
  79                 exit(1);
  80         }
  81 }
  82
  83 //**********************************************************************************************************************
  84
  85 int NameAssignment::get(string key){
  86
  87         return  (*this)[key];
  88
  89 }
  90 //**********************************************************************************************************************
  91
  92 string NameAssignment::get(int key){
  93
  94         return  reverse[key];
  95
  96 }
  97 //**********************************************************************************************************************
  98