mergefilecommand.h

   1 #ifndef MERGEFILECOMMAND_H
   2 #define MERGEFILECOMMAND_H
   3
   4 /*
   5  *  mergefilecommand.h
   6  *  Mothur
   7  *
   8  *  Created by Pat Schloss on 6/14/09.
   9  *  Copyright 2009 Patrick D. Schloss. All rights reserved.
  10  *
  11  */
  12
  13 #include "mothur.h"
  14 #include "command.hpp"
  15
  16 class MergeFileCommand : public Command {
  17 public:
  18         MergeFileCommand(string);
  19         MergeFileCommand();
  20         ~MergeFileCommand();
  21         vector<string> getRequiredParameters();
  22         vector<string> getValidParameters();
  23         vector<string> getRequiredFiles();
  24         map<string, vector<string> > getOutputFiles() { return outputTypes; }
  25         int execute();
  26         void help();
  27
  28 private:
  29         vector<string> fileNames, outputNames;
  30         map<string, vector<string> > outputTypes;
  31         string outputFileName;
  32         int numInputFiles;
  33         bool abort;
  34 };
  35
  36 #endif