listvector.hpp

   1 #ifndef LIST_H
   2 #define LIST_H
   3
   4 #include "datavector.hpp"
   5 #include "groupmap.h"
   6 #include "globaldata.hpp"
   7 #include "sharedordervector.h"
   8 #include <iostream>
   9 #include <map>
  10
  11
  12 class ListVector : public DataVector {
  13
  14 public:
  15         ListVector();
  16         ListVector(int);
  17 //      ListVector(const ListVector&);
  18         ListVector(string, vector<string>);
  19         ListVector(const ListVector& lv) : DataVector(lv.label), data(lv.data), maxRank(lv.maxRank), numBins(lv.numBins), numSeqs(lv.numSeqs){};
  20         ListVector(ifstream&);
  21         ~ListVector(){};
  22
  23         int getNumBins()                                                        {       return numBins;         }
  24         int getNumSeqs()                                                        {       return numSeqs;         }
  25         int getMaxRank()                                                        {       return maxRank;         }
  26
  27         void set(int, string);
  28         string get(int);
  29         void push_back(string);
  30         void resize(int);
  31         void clear();
  32         int size();
  33         void print(ostream&);
  34
  35         RAbundVector getRAbundVector();
  36         SAbundVector getSAbundVector();
  37         OrderVector getOrderVector(map<string,int>*);
  38         SharedOrderVector* getSharedOrderVector();
  39
  40 private:
  41         vector<string> data;
  42         GlobalData* globaldata;
  43         GroupMap* groupmap;
  44         int maxRank;
  45         int numBins;
  46         int numSeqs;
  47
  48 };
  49
  50 #endif