heatmapcommand.h

   1 #ifndef HEATMAPCOMMAND_H
   2 #define HEATMAPCOMMAND_H
   3
   4 /*
   5  *  heatmapcommand.h
   6  *  Mothur
   7  *
   8  *  Created by Sarah Westcott on 3/25/09.
   9  *  Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
  10  *
  11  */
  12
  13
  14 #include "command.hpp"
  15 #include "inputdata.h"
  16 #include "readotu.h"
  17 #include "sharedlistvector.h"
  18 #include "heatmap.h"
  19 #include "rabundvector.hpp"
  20
  21 class GlobalData;
  22
  23 class HeatMapCommand : public Command {
  24
  25 public:
  26         HeatMapCommand(string);
  27         ~HeatMapCommand();
  28         int execute();
  29         void help();
  30
  31 private:
  32         GlobalData* globaldata;
  33         ReadOTUFile* read;
  34         InputData* input;
  35         SharedListVector* SharedList;
  36         RAbundVector* rabund;
  37         vector<SharedRAbundVector*> lookup;
  38         HeatMap* heatmap;
  39
  40         bool abort, allLines;
  41         set<string> labels; //holds labels to be used
  42         string format, groups, sorted, scale, label, outputDir;
  43         vector<string> Groups, outputNames;
  44
  45
  46 };
  47
  48 #endif
  49