getlistcountcommand.h

   1 #ifndef GETLISTCOUNTCOMMAND_H
   2 #define GETLISTCOUNTCOMMAND_H
   3 /*
   4  *  getlistcountcommand.h
   5  *  Mothur
   6  *
   7  *  Created by westcott on 10/12/09.
   8  *  Copyright 2009 Schloss Lab. All rights reserved.
   9  *
  10  */
  11
  12 #include "command.hpp"
  13 #include "inputdata.h"
  14 #include "listvector.hpp"
  15 #include "readotu.h"
  16
  17 class GlobalData;
  18
  19 /**********************************************************/
  20
  21 class GetListCountCommand : public Command {
  22
  23 public:
  24         GetListCountCommand(string);
  25         ~GetListCountCommand();
  26         int execute();
  27         void help();
  28
  29 private:
  30         GlobalData* globaldata;
  31         ListVector* list;
  32         ReadOTUFile* read;
  33         InputData* input;
  34
  35         bool abort, allLines;
  36         set<string> labels; //holds labels to be used
  37         string label, listfile, outputDir;
  38         ofstream out;
  39
  40         void process(ListVector*);
  41 };
  42 /**********************************************************/
  43
  44 #endif