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added kruskal.wallis command. added worked on make.lefse. working of lefse command...
[mothur.git] / dlibshuff.h
1 #ifndef DLIBSHUFF
2 #define DLIBSHUFF
3
4 /*
5  *  dlibshuff.h
6  *  Mothur
7  *
8  *  Created by Pat Schloss on 4/8/09.
9  *  Copyright 2009 Patrick D. Schloss. All rights reserved.
10  *
11  */
12
13 #include "fullmatrix.h"
14 #include "libshuff.h"
15
16 class DLibshuff : public Libshuff {
17
18 public:
19         DLibshuff(FullMatrix*, int, float, float);
20         vector<vector<double> > evaluateAll();
21         float evaluatePair(int, int);
22
23 private:
24         int numDXs;
25         double dCalculate(int, int);
26         vector<int> calcN(vector<double>);
27 };
28
29 #endif