distancedb.hpp

   1 #ifndef DISTANCEDB_HPP
   2 #define DISTANCEDB_HPP
   3
   4 /*
   5  *  distancedb.hpp
   6  *
   7  *
   8  *  Created by Pat Schloss on 12/29/08.
   9  *  Copyright 2008 Patrick D. Schloss. All rights reserved.
  10  *
  11  */
  12
  13
  14 #include "mothur.h"
  15
  16 class DistanceDB : public Database {
  17
  18 public:
  19
  20         DistanceDB(string, string);
  21         vector<int> findClosestSequences(Sequence*, int);
  22
  23 private:
  24
  25         struct hit{
  26                 string seqName;
  27                 int indexNumber;
  28                 float simScore;
  29         };
  30
  31         vector<hit> mostSimSequenceVector;
  32         int searchIndex;
  33 };
  34
  35 #endif