commandoptionparser.cpp

   1 /*
   2  *  commandoptionparser.cpp
   3  *
   4  *
   5  *  Created by Pat Schloss on 10/23/08.
   6  *  Copyright 2008 Patrick D. Schloss. All rights reserved.
   7  *
   8  */
   9
  10
  11 #include "globaldata.hpp"
  12 #include "commandoptionparser.hpp"
  13
  14
  15 //**********************************************************************************************************************
  16 //This Function parses through the command line and pulls out the command then sends the options to  the parseGlobalData
  17 CommandOptionParser::CommandOptionParser(string input){
  18         try {
  19                 m = MothurOut::getInstance();
  20
  21                 int openParen = input.find_first_of('(');
  22                 int closeParen = input.find_last_of(')');
  23                 optionString = "";
  24                 commandString = "";
  25
  26                 if(openParen != -1 && closeParen != -1){
  27                         commandString = input.substr(0, openParen);   //commandString contains everything before "("
  28                         optionString = input.substr((openParen+1), (closeParen-openParen-1)); //optionString contains everything between "(" and ")".
  29                 }
  30                 else if (openParen == -1) { m->mothurOut("You are missing ("); m->mothurOutEndLine(); }
  31                 else if (closeParen == -1) { m->mothurOut("You are missing )"); m->mothurOutEndLine(); }
  32
  33                 //GlobalData* globaldata = GlobalData::getInstance();
  34                 //globaldata->parseGlobalData(commandString, optionString);                     //parser to separate and check options
  35         }
  36         catch(exception& e) {
  37                 m->errorOut(e, "CommandOptionParser", "CommandOptionParser");
  38                 exit(1);
  39         }
  40 }
  41
  42 //**********************************************************************************************************************
  43
  44 string CommandOptionParser::getCommandString()  {       return commandString;   }
  45
  46 //**********************************************************************************************************************
  47
  48 string CommandOptionParser::getOptionString()   {       return optionString;    }
  49
  50 //**********************************************************************************************************************