collectsharedcommand.h

   1 #ifndef COLLECTSHAREDCOMMAND_H
   2 #define COLLECTSHAREDCOMMAND_H
   3 /*
   4  *  collectsharedcommand.h
   5  *  Dotur
   6  *
   7  *  Created by Sarah Westcott on 1/2/09.
   8  *  Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
   9  *
  10  */
  11
  12
  13 #include "command.hpp"
  14 #include "sharedordervector.h"
  15 #include "sharedlistvector.h"
  16 #include "inputdata.h"
  17 #include "groupmap.h"
  18 #include "collect.h"
  19 #include "display.h"
  20 #include "readotu.h"
  21 #include "validcalculator.h"
  22 #include "sharedutilities.h"
  23
  24 class GlobalData;
  25
  26 class CollectSharedCommand : public Command {
  27
  28 public:
  29         CollectSharedCommand(string);
  30         ~CollectSharedCommand();
  31         int execute();
  32         void help();
  33
  34 private:
  35         GlobalData* globaldata;
  36         SharedUtil* util;
  37         GroupMap* groupmap;
  38         SharedListVector* SharedList;
  39         ReadOTUFile* read;
  40         SharedOrderVector* order;
  41         InputData* input;
  42         ValidCalculators* validCalculator;
  43         Collect* cCurve;
  44         vector<Display*> cDisplays;
  45         int freq;
  46         string format;
  47
  48         bool abort, allLines, all;
  49         set<string> labels; //holds labels to be used
  50         string label, calc, groups, outputDir;
  51         vector<string>  Estimators, Groups, outputNames;
  52
  53
  54 };
  55
  56 #endif