collectdisplay.h

   1 #ifndef COLLECTDISPLAY_H
   2 #define COLLECTDISPLAY_H
   3
   4 #include "sabundvector.hpp"
   5 #include "sharedsabundvector.h"
   6 #include "calculator.h"
   7 #include "fileoutput.h"
   8 #include "display.h"
   9
  10
  11 using namespace std;
  12
  13 /***********************************************************************/
  14
  15 class CollectDisplay : public Display {
  16
  17 public:
  18         CollectDisplay(Calculator* calc, FileOutput* file) : estimate(calc), output(file) {timesCalled = 0;};
  19         ~CollectDisplay()       {       delete estimate; delete output;         }
  20         void update(SAbundVector* rank){
  21                 nSeqs=rank->getNumSeqs();
  22                 data = estimate->getValues(rank);
  23                 output->output(nSeqs, data);
  24         };
  25
  26         void update(vector<SharedRAbundVector*> shared, int numSeqs, int numGroups){
  27                 timesCalled++;
  28                 data = estimate->getValues(shared);  //passes estimators a shared vector from each group to be compared
  29
  30                 //figure out what groups are being compared in getValues
  31                 //because the jumble parameter randomizes the order we need to put the results in the correct column in the output file
  32                 int group1Index, group2Index, pos;
  33                 group1Index = shared[0]->getGroupIndex();
  34                 group2Index = shared[1]->getGroupIndex();
  35
  36                 numGroupComb = 0;
  37                 int n = 1;
  38                 for (int i = 0; i < (numGroups - 1); i++) {
  39                         for (int l = n; l < numGroups; l++) {
  40                                 if ((group1Index == i) && (group2Index == l)) {
  41                                         pos = numGroupComb;  //pos tells you which column in the output file you are in
  42                                 }else if ((group1Index == l) && (group2Index == i)) {
  43                                         pos = numGroupComb;
  44                                 }
  45                                 numGroupComb++;
  46                         }
  47                         n++;
  48                 }
  49
  50                 if (estimate->getMultiple() == true) {
  51                         numGroupComb++;
  52                         groupData.resize((numGroupComb*data.size()), 0);
  53                         //is this the time its called with all values
  54                         if  ((timesCalled % numGroupComb) == 0) {
  55                                 //last spot
  56                                 pos = ((groupData.size()-1) * data.size());
  57                         }
  58                         //fills groupdata with datas info
  59                         for (int i = 0; i < data.size(); i++) {
  60                                 groupData[pos+i] = data[i];
  61                         }
  62                 }else {
  63                         groupData.resize((numGroupComb*data.size()), 0);
  64                         //fills groupdata with datas info
  65                         for (int i = 0; i < data.size(); i++) {
  66                                 groupData[pos+i] = data[i];
  67                         }
  68                 }
  69
  70                 //when you get all your groups info then output
  71                 if ((timesCalled % numGroupComb) == 0) {
  72                         output->output(numSeqs, groupData);
  73                 }
  74         };
  75
  76         void init(string s)             {       output->initFile(s);    };
  77         void reset()                    {       output->resetFile();    };
  78         void close()                    {       output->resetFile();    };
  79         bool isCalcMultiple() { return estimate->getMultiple(); }
  80
  81 private:
  82         Calculator* estimate;
  83         FileOutput* output;
  84         int nSeqs, timesCalled, numGroupComb;
  85         vector<double> data;
  86         vector<double> groupData;
  87 };
  88
  89 /***********************************************************************/
  90
  91 #endif