collect.h

   1 #ifndef COLLECT_H
   2 #define COLLECT_H
   3
   4 #include "collectorscurvedata.h"
   5 #include "display.h"
   6 #include "ordervector.hpp"
   7 #include "sabundvector.hpp"
   8 #include "rabundvector.hpp"
   9 #include "sharedordervector.h"
  10 #include "datavector.hpp"
  11 #include "globaldata.hpp"
  12 #include "mothurout.h"
  13
  14 /***********************************************************************/
  15
  16 class Collect {
  17
  18 public:
  19         Collect(OrderVector* order, vector<Display*> disp) :
  20                                         numSeqs(order->getNumSeqs()), order(order), displays(disp), label(order->getLabel())  { m = MothurOut::getInstance(); };
  21         Collect(SharedOrderVector* sharedorder, vector<Display*> disp) :
  22                                         numSeqs(sharedorder->getNumSeqs()), sharedorder(sharedorder), displays(disp), label(sharedorder->getLabel())  { m = MothurOut::getInstance(); }
  23
  24         ~Collect(){             };
  25         void getCurve(int);
  26         void getSharedCurve(int);
  27
  28 private:
  29         SharedOrderVector* sharedorder;
  30         GlobalData* globaldata;
  31         OrderVector* order;
  32         vector<Display*> displays;
  33         int numSeqs, numGroupComb, totalNumSeq;
  34         string label, groupLabel;
  35         void getGroupComb();
  36         vector<string> groupComb;
  37         bool validGroup(vector<string>, string);
  38         MothurOut* m;
  39 };
  40
  41
  42 #endif
  43