templates/latex_shell.Rnw

   1 \documentclass[english,12pt]{article}
   2 \usepackage{fontspec}
   3 \setmainfont{FreeSerif}
   4 \setsansfont{FreeSans}
   5 \setmonofont{FreeMono}
   6 \setmathrm{FreeSerif}
   7 \setmathsf{FreeSans}
   8 \setmathtt{FreeSerif}
   9 \usepackage[letterpaper,left=1in,right=1in,top=1in,bottom=1in,headheight=14pt]{geometry}
  10 \usepackage{url}
  11 \usepackage{fancyhdr}
  12 \usepackage{graphicx}
  13 \usepackage[bf]{caption}
  14 \usepackage{rotating}
  15 \usepackage{wrapfig}
  16 \usepackage{booktabs}
  17 \usepackage{float}
  18 \usepackage{multirow}
  19 \usepackage{setspace}
  20 \usepackage{acro}
  21 \usepackage{array}
  22 \usepackage{dcolumn}
  23 \usepackage{adjustbox}
  24 \usepackage{longtable}
  25 \usepackage{pdflscape}
  26 \usepackage[backend=biber,natbib=true,hyperref=true,style=numeric-comp]{biblatex}
  27 \addbibresource{references.bib}
  28 %\usepackage[noblocks,auth-sc]{authblk}
  29 \usepackage[hyperfigures,bookmarks,colorlinks]{hyperref}
  30 %\usepackage[hyperfigures,bookmarks,colorlinks,citecolor=black,filecolor=black,linkcolor=black,urlcolor=black]{hyperref}
  31 % Floats at end for journals
  32 % \usepackage[nolists,figuresfirst,nomarkers,heads,nofighead,notabhead]{endfloat}
  33 % \AtBeginFigures{\section*{Figure Legends}\renewcommand{\efloatseparator}{\hbox{}}}
  34 % \AtBeginTables{\section*{Tables}\renewcommand{\efloatseparator}{\mbox{}}}
  35 \usepackage[nomargin,inline,draft]{fixme}
  36 \newcommand{\DLA}[1]{\textcolor{red}{\fxnote{DLA: #1}}}
  37 \usepackage[x11names,svgnames]{xcolor}
  38 \usepackage{texshade}
  39 \usepackage{tikz}
  40 \usepackage{nameref}
  41 \usepackage{xspace}
  42 % this package will stretch the font slightly if necessary.
  43 \usepackage{microtype}
  44 \usepackage{zref-xr,zref-user}
  45 \usepackage[capitalize]{cleveref}
  46 \def\newblock{\hskip}
  47 \newenvironment{paperquote}{%
  48   \begin{quote}%
  49      \it
  50   }%
  51   {\end{quote}}
  52 \renewcommand{\textfraction}{0.15}
  53 \renewcommand{\topfraction}{0.85}
  54 \renewcommand{\bottomfraction}{0.65}
  55 \renewcommand{\floatpagefraction}{0.60}
  56 %\renewcommand{\baselinestretch}{1.8}
  57 \newenvironment{enumerate*}%
  58   {\begin{enumerate}%
  59     \setlength{\itemsep}{0pt}%
  60     \setlength{\parskip}{0pt}}%
  61   {\end{enumerate}}
  62 \newenvironment{itemize*}%
  63   {\begin{itemize}%
  64     \setlength{\itemsep}{0pt}%
  65     \setlength{\parskip}{0pt}}%
  66   {\end{itemize}}
  67 \oddsidemargin 0.0in
  68 \textwidth 6in
  69 \raggedbottom
  70 \clubpenalty = 10000
  71 \widowpenalty = 10000
  72 \setlength{\emergencystretch}{20em}
  73 \renewcommand\Affilfont{\itshape\small}
  74 \renewcommand\cite[1]{\autocite{#1}}
  75 \pagestyle{fancy}
  76 \author{AUTHOR}
  77 \title{TITLE}
  78 \date{\ }
  79 \onehalfspacing
  80 % \doublespacing
  81
  82 \begin{document}
  83
  84 <<load.libraries,echo=FALSE,results="hide",warning=FALSE,message=FALSE,error=FALSE,cache=FALSE>>=
  85 opts_chunk$set(dev="cairo_pdf",out.width="\\textwidth",out.height="0.7\\textheight",out.extra="keepaspectratio")
  86 #opts_chunk$set(cache=TRUE, autodep=TRUE)
  87 options(device = function(file, width = 8, height = 7, ...) {
  88   cairo_pdf(tempfile(), width = width, height = height, ...)
  89 })
  90 library("data.table")
  91 library("ggplot2")
  92 library("reshape2")
  93 library("proto")
  94 @
  95
  96
  97
  98 \end{document}