templates/latex_shell.Rnw

   1 \documentclass[english,12pt]{article}
   2 \usepackage{fontspec}
   3 \setmainfont{FreeSerif}
   4 \setsansfont{FreeSans}
   5 \setmonofont{FreeMono}
   6 \usepackage[letterpaper,left=1in,right=1in,top=1in,bottom=1in,headheight=14pt]{geometry}
   7 \usepackage{url}
   8 \usepackage{fancyhdr}
   9 \usepackage{graphicx}
  10 \usepackage[bf]{caption}
  11 \usepackage{rotating}
  12 \usepackage{wrapfig}
  13 \usepackage{booktabs}
  14 \usepackage{float}
  15 \usepackage{multirow}
  16 \usepackage{setspace}
  17 \usepackage{txfonts}
  18 %\usepackage{fancyref}
  19 \usepackage{acronym}
  20 \usepackage{array}
  21 \usepackage{dcolumn}
  22 \usepackage{adjustbox}
  23 \usepackage{longtable}
  24 \usepackage{pdflscape}
  25 \usepackage[backend=biber,natbib=true,hyperref=true,style=numeric-comp]{biblatex}
  26 \addbibresource{references.bib}
  27 %\usepackage[noblocks,auth-sc]{authblk}
  28 \usepackage[hyperfigures,bookmarks,colorlinks]{hyperref}
  29 %\usepackage[hyperfigures,bookmarks,colorlinks,citecolor=black,filecolor=black,linkcolor=black,urlcolor=black]{hyperref}
  30 % Floats at end for journals
  31 % \usepackage[nolists,figuresfirst,nomarkers,heads,nofighead,notabhead]{endfloat}
  32 % \AtBeginFigures{\section*{Figure Legends}\renewcommand{\efloatseparator}{\hbox{}}}
  33 % \AtBeginTables{\section*{Tables}\renewcommand{\efloatseparator}{\mbox{}}}
  34 \usepackage[nomargin,inline,draft]{fixme}
  35 \newcommand{\DLA}[1]{\textcolor{red}{\fxnote{DLA: #1}}}
  36 \usepackage[x11names,svgnames]{xcolor}
  37 \usepackage{texshade}
  38 \usepackage{tikz}
  39 \usepackage{nameref}
  40 \usepackage{xspace}
  41 % this package will stretch the font slightly if necessary.
  42 \usepackage{microtype}
  43 \usepackage{zref-xr,zref-user}
  44 \usepackage[capitalize]{cleveref}
  45 \newenvironment{narrow}[2]{%
  46   \begin{list}{}{%
  47       \setlength{\topsep}{0pt}%
  48       \setlength{\leftmargin}{#1}%
  49       \setlength{\rightmargin}{#2}%
  50       \setlength{\listparindent}{\parindent}%
  51       \setlength{\itemindent}{\parindent}%
  52       \setlength{\parsep}{\parskip}}%
  53   \item[]}{\end{list}}
  54 \def\newblock{\hskip}
  55 \newenvironment{paperquote}{%
  56   \begin{quote}%
  57      \it
  58   }%
  59   {\end{quote}}
  60 \renewcommand{\textfraction}{0.15}
  61 \renewcommand{\topfraction}{0.85}
  62 \renewcommand{\bottomfraction}{0.65}
  63 \renewcommand{\floatpagefraction}{0.60}
  64 %\renewcommand{\baselinestretch}{1.8}
  65 \newenvironment{enumerate*}%
  66   {\begin{enumerate}%
  67     \setlength{\itemsep}{0pt}%
  68     \setlength{\parskip}{0pt}}%
  69   {\end{enumerate}}
  70 \newenvironment{itemize*}%
  71   {\begin{itemize}%
  72     \setlength{\itemsep}{0pt}%
  73     \setlength{\parskip}{0pt}}%
  74   {\end{itemize}}
  75 \oddsidemargin 0.0in
  76 \textwidth 6in
  77 \raggedbottom
  78 \clubpenalty = 10000
  79 \widowpenalty = 10000
  80 \setlength{\emergencystretch}{20em}
  81 \renewcommand\Affilfont{\itshape\small}
  82 \renewcommand\cite[1]{\autocite{#1}}
  83 \pagestyle{fancy}
  84 \author{AUTHOR}
  85 \title{TITLE}
  86 \date{\ }
  87 \onehalfspacing
  88 % \doublespacing
  89
  90 \begin{document}
  91
  92 <<load.libraries,echo=FALSE,results="hide",warning=FALSE,message=FALSE,error=FALSE,cache=FALSE>>=
  93 opts_chunk$set(dev="cairo_pdf",out.width="\\textwidth",out.height="0.7\\textheight",out.extra="keepaspectratio")
  94 #opts_chunk$set(cache=TRUE, autodep=TRUE)
  95 options(device = function(file, width = 8, height = 7, ...) {
  96   cairo_pdf(tempfile(), width = width, height = height, ...)
  97 })
  98 library("data.table")
  99 library("ggplot2")
 100 library("reshape2")
 101 library("proto")
 102 @
 103
 104
 105
 106 \end{document}