templates/latex_shell.Rnw

   1 \documentclass[english,12pt]{article}
   2 \usepackage{fontspec}
   3 \setmainfont{FreeSerif}
   4 \setsansfont{FreeSans}
   5 \setmonofont{FreeMono}
   6 \setmathrm{FreeSerif}
   7 \setmathsf{FreeSans}
   8 \setmathtt{FreeSerif}
   9 \usepackage[letterpaper,left=1in,right=1in,top=1in,bottom=1in,headheight=14pt]{geometry}
  10 \usepackage{url}
  11 \usepackage{fancyhdr}
  12 \usepackage{graphicx}
  13 \usepackage[bf]{caption}
  14 \usepackage{rotating}
  15 \usepackage{wrapfig}
  16 \usepackage{booktabs}
  17 \usepackage{float}
  18 \usepackage{multirow}
  19 \usepackage{setspace}
  20 \usepackage{acro}
  21 \usepackage{array}
  22 \usepackage{dcolumn}
  23 \usepackage{adjustbox}
  24 \usepackage{longtable}
  25 \usepackage{pdflscape}
  26 \usepackage[backend=biber,natbib=true,hyperref=true,style=numeric-comp]{biblatex}
  27 \addbibresource{references.bib}
  28 %\usepackage[noblocks,auth-sc]{authblk}
  29 \usepackage[hyperfigures,bookmarks,colorlinks]{hyperref}
  30 %\usepackage[hyperfigures,bookmarks,colorlinks,citecolor=black,filecolor=black,linkcolor=black,urlcolor=black]{hyperref}
  31 % Floats at end for journals
  32 % \usepackage[nolists,figuresfirst,nomarkers,heads,nofighead,notabhead]{endfloat}
  33 % \AtBeginFigures{\section*{Figure Legends}\renewcommand{\efloatseparator}{\hbox{}}}
  34 % \AtBeginTables{\section*{Tables}\renewcommand{\efloatseparator}{\mbox{}}}
  35 \usepackage[nomargin,inline,draft]{fixme}
  36 \newcommand{\DLA}[1]{\textcolor{red}{\fxnote{DLA: #1}}}
  37 \usepackage[x11names,svgnames]{xcolor}
  38 \usepackage{texshade}
  39 \usepackage{tikz}
  40 \usepackage{nameref}
  41 \usepackage{xspace}
  42 % this package will stretch the font slightly if necessary.
  43 \usepackage{microtype}
  44 \usepackage{zref-xr,zref-user}
  45 \usepackage[capitalize]{cleveref}
  46 \newenvironment{narrow}[2]{%
  47   \begin{list}{}{%
  48       \setlength{\topsep}{0pt}%
  49       \setlength{\leftmargin}{#1}%
  50       \setlength{\rightmargin}{#2}%
  51       \setlength{\listparindent}{\parindent}%
  52       \setlength{\itemindent}{\parindent}%
  53       \setlength{\parsep}{\parskip}}%
  54   \item[]}{\end{list}}
  55 \def\newblock{\hskip}
  56 \newenvironment{paperquote}{%
  57   \begin{quote}%
  58      \it
  59   }%
  60   {\end{quote}}
  61 \renewcommand{\textfraction}{0.15}
  62 \renewcommand{\topfraction}{0.85}
  63 \renewcommand{\bottomfraction}{0.65}
  64 \renewcommand{\floatpagefraction}{0.60}
  65 %\renewcommand{\baselinestretch}{1.8}
  66 \newenvironment{enumerate*}%
  67   {\begin{enumerate}%
  68     \setlength{\itemsep}{0pt}%
  69     \setlength{\parskip}{0pt}}%
  70   {\end{enumerate}}
  71 \newenvironment{itemize*}%
  72   {\begin{itemize}%
  73     \setlength{\itemsep}{0pt}%
  74     \setlength{\parskip}{0pt}}%
  75   {\end{itemize}}
  76 \oddsidemargin 0.0in
  77 \textwidth 6in
  78 \raggedbottom
  79 \clubpenalty = 10000
  80 \widowpenalty = 10000
  81 \setlength{\emergencystretch}{20em}
  82 \renewcommand\Affilfont{\itshape\small}
  83 \renewcommand\cite[1]{\autocite{#1}}
  84 \pagestyle{fancy}
  85 \author{AUTHOR}
  86 \title{TITLE}
  87 \date{\ }
  88 \onehalfspacing
  89 % \doublespacing
  90
  91 \begin{document}
  92
  93 <<load.libraries,echo=FALSE,results="hide",warning=FALSE,message=FALSE,error=FALSE,cache=FALSE>>=
  94 opts_chunk$set(dev="cairo_pdf",out.width="\\textwidth",out.height="0.7\\textheight",out.extra="keepaspectratio")
  95 #opts_chunk$set(cache=TRUE, autodep=TRUE)
  96 options(device = function(file, width = 8, height = 7, ...) {
  97   cairo_pdf(tempfile(), width = width, height = height, ...)
  98 })
  99 library("data.table")
 100 library("ggplot2")
 101 library("reshape2")
 102 library("proto")
 103 @
 104
 105
 106
 107 \end{document}