templates/latex_shell.Rnw

   1 \documentclass[english,12pt]{article}
   2 \usepackage{fontspec}
   3 \setmainfont{FreeSerif}
   4 \setsansfont{FreeSans}
   5 \setmonofont{FreeMono}
   6 \usepackage[letterpaper,left=1in,right=1in,top=1in,bottom=1in,headheight=14pt]{geometry}
   7 \usepackage{url}
   8 \usepackage{fancyhdr}
   9 \usepackage{graphicx}
  10 \usepackage[bf]{caption}
  11 \usepackage{rotating}
  12 \usepackage{wrapfig}
  13 \usepackage{booktabs}
  14 \usepackage{float}
  15 \usepackage{multirow}
  16 \usepackage{setspace}
  17 \usepackage{txfonts}
  18 %\usepackage{fancyref}
  19 \usepackage{acronym}
  20 \usepackage{array}
  21 \usepackage{dcolumn}
  22 \usepackage{adjustbox}
  23 \usepackage{longtable}
  24 \usepackage{pdflscape}
  25 \usepackage[backend=biber,natbib=true,hyperref=true,style=numeric-comp]{biblatex}
  26 \addbibresource{references.bib}
  27 %\usepackage[noblocks]{authblk}
  28 \usepackage[hyperfigures,bookmarks,colorlinks]{hyperref}
  29 %\usepackage[hyperfigures,bookmarks,colorlinks,citecolor=black,filecolor=black,linkcolor=black,urlcolor=black]{hyperref}
  30 % Floats at end for journals
  31 % \usepackage[nolists,figuresfirst,nomarkers,heads,nofighead,notabhead]{endfloat}
  32 % \AtBeginFigures{\section*{Figure Legends}\renewcommand{\efloatseparator}{\hbox{}}}
  33 % \AtBeginTables{\section*{Tables}\renewcommand{\efloatseparator}{\mbox{}}}
  34 \usepackage[nomargin,inline,draft]{fixme}
  35 \newcommand{\DLA}[1]{\textcolor{red}{\fxnote{DLA: #1}}}
  36 \usepackage[x11names,svgnames]{xcolor}
  37 \usepackage{texshade}
  38 \usepackage{tikz}
  39 \usepackage{nameref}
  40 \usepackage{zref-xr,zref-user}
  41 \newenvironment{narrow}[2]{%
  42   \begin{list}{}{%
  43       \setlength{\topsep}{0pt}%
  44       \setlength{\leftmargin}{#1}%
  45       \setlength{\rightmargin}{#2}%
  46       \setlength{\listparindent}{\parindent}%
  47       \setlength{\itemindent}{\parindent}%
  48       \setlength{\parsep}{\parskip}}%
  49   \item[]}{\end{list}}
  50 \def\newblock{\hskip}
  51 \newenvironment{paperquote}{%
  52   \begin{quote}%
  53      \it
  54   }%
  55   {\end{quote}}
  56 \renewcommand{\textfraction}{0.15}
  57 \renewcommand{\topfraction}{0.85}
  58 \renewcommand{\bottomfraction}{0.65}
  59 \renewcommand{\floatpagefraction}{0.60}
  60 %\renewcommand{\baselinestretch}{1.8}
  61 \newenvironment{enumerate*}%
  62   {\begin{enumerate}%
  63     \setlength{\itemsep}{0pt}%
  64     \setlength{\parskip}{0pt}}%
  65   {\end{enumerate}}
  66 \newenvironment{itemize*}%
  67   {\begin{itemize}%
  68     \setlength{\itemsep}{0pt}%
  69     \setlength{\parskip}{0pt}}%
  70   {\end{itemize}}
  71 \oddsidemargin 0.0in
  72 \textwidth 6.5in
  73 \raggedbottom
  74 \clubpenalty = 10000
  75 \widowpenalty = 10000
  76 \pagestyle{fancy}
  77 \author{AUTHOR}
  78 \title{TITLE}
  79 \date{\ }
  80 \onehalfspacing
  81
  82 \begin{document}
  83
  84 <<load.libraries,echo=FALSE,results="hide",warning=FALSE,message=FALSE,error=FALSE,cache=FALSE>>=
  85 opts_chunk$set(dev="cairo_pdf",out.width="\\textwidth",out.height="0.7\\textheight",out.extra="keepaspectratio")
  86 #opts_chunk$set(cache=TRUE, autodep=TRUE)
  87 options(device = function(file, width = 8, height = 7, ...) {
  88   cairo_pdf(tempfile(), width = width, height = height, ...)
  89 })
  90 library("data.table")
  91 library("ggplot2")
  92 library("reshape2")
  93 library("proto")
  94 @
  95
  96
  97
  98 \end{document}