emacs_el/configuration/org-mode-configuration.el

   1 (require 'org-id)
   2 (require 'reftex)
   3 (require 'gnus)
   4
   5 ;; The following lines are always needed. Choose your own keys.
   6 (add-to-list 'auto-mode-alist '("\\.\\(org\\|org_archive\\|txt\\)$" . org-mode))
   7 (require 'org)
   8 (global-set-key "\C-cl" 'org-store-link)
   9 (global-set-key "\C-ca" 'org-agenda)
  10 (global-set-key "\C-cb" 'org-iswitchb)
  11 (setq-default org-log-done 'time)
  12 (setq-default org-agenda-ndays 5)
  13
  14 ;; agenda configuration
  15 ;; Do not dim blocked tasks
  16 (setq org-agenda-dim-blocked-tasks nil)
  17
  18 ;; Compact the block agenda view
  19 (setq org-agenda-compact-blocks t)
  20
  21 ;; Custom agenda command definitions
  22 (setq org-agenda-custom-commands
  23       (quote (("N" "Notes" tags "NOTE"
  24                ((org-agenda-overriding-header "Notes")
  25                 (org-tags-match-list-sublevels t)))
  26               ("h" "Habits" tags-todo "STYLE=\"habit\""
  27                ((org-agenda-overriding-header "Habits")
  28                 (org-agenda-sorting-strategy
  29                  '(todo-state-down effort-up category-keep))))
  30               (" " "Agenda"
  31                ((agenda "" nil)
  32                 (tags "REFILE"
  33                       ((org-agenda-overriding-header "Tasks to Refile")
  34                        (org-tags-match-list-sublevels nil)))
  35                 (tags-todo "-CANCELLED/!"
  36                            ((org-agenda-overriding-header "Stuck Projects")
  37                             (org-agenda-skip-function 'bh/skip-non-stuck-projects)
  38                             (org-agenda-sorting-strategy
  39                              '(category-keep))))
  40                 (tags-todo "-HOLD-CANCELLED/!"
  41                            ((org-agenda-overriding-header "Projects")
  42                             (org-agenda-skip-function 'bh/skip-non-projects)
  43                             (org-tags-match-list-sublevels 'indented)
  44                             (org-agenda-sorting-strategy
  45                              '(category-keep))))
  46                 (tags-todo "-CANCELLED/!NEXT"
  47                            ((org-agenda-overriding-header (concat "Project Next Tasks"
  48                                                                   (if bh/hide-scheduled-and-waiting-next-tasks
  49                                                                       ""
  50                                                                     " (including WAITING and SCHEDULED tasks)")))
  51                             (org-agenda-skip-function 'bh/skip-projects-and-habits-and-single-tasks)
  52                             (org-tags-match-list-sublevels t)
  53                             (org-agenda-todo-ignore-scheduled bh/hide-scheduled-and-waiting-next-tasks)
  54                             (org-agenda-todo-ignore-deadlines bh/hide-scheduled-and-waiting-next-tasks)
  55                             (org-agenda-todo-ignore-with-date bh/hide-scheduled-and-waiting-next-tasks)
  56                             (org-agenda-sorting-strategy
  57                              '(todo-state-down effort-up category-keep))))
  58                 (tags-todo "-REFILE-CANCELLED-WAITING-HOLD/!"
  59                            ((org-agenda-overriding-header (concat "Project Subtasks"
  60                                                                   (if bh/hide-scheduled-and-waiting-next-tasks
  61                                                                       ""
  62                                                                     " (including WAITING and SCHEDULED tasks)")))
  63                             (org-agenda-skip-function 'bh/skip-non-project-tasks)
  64                             (org-agenda-todo-ignore-scheduled bh/hide-scheduled-and-waiting-next-tasks)
  65                             (org-agenda-todo-ignore-deadlines bh/hide-scheduled-and-waiting-next-tasks)
  66                             (org-agenda-todo-ignore-with-date bh/hide-scheduled-and-waiting-next-tasks)
  67                             (org-agenda-sorting-strategy
  68                              '(category-keep))))
  69                 (tags-todo "-REFILE-CANCELLED-WAITING-HOLD/!"
  70                            ((org-agenda-overriding-header (concat "Standalone Tasks"
  71                                                                   (if bh/hide-scheduled-and-waiting-next-tasks
  72                                                                       ""
  73                                                                     " (including WAITING and SCHEDULED tasks)")))
  74                             (org-agenda-skip-function 'bh/skip-project-tasks)
  75                             (org-agenda-todo-ignore-scheduled bh/hide-scheduled-and-waiting-next-tasks)
  76                             (org-agenda-todo-ignore-deadlines bh/hide-scheduled-and-waiting-next-tasks)
  77                             (org-agenda-todo-ignore-with-date bh/hide-scheduled-and-waiting-next-tasks)
  78                             (org-agenda-sorting-strategy
  79                              '(category-keep))))
  80                 (tags-todo "-CANCELLED+WAITING|HOLD/!"
  81                            ((org-agenda-overriding-header "Waiting and Postponed Tasks")
  82                             (org-agenda-skip-function 'bh/skip-stuck-projects)
  83                             (org-tags-match-list-sublevels nil)
  84                             (org-agenda-todo-ignore-scheduled t)
  85                             (org-agenda-todo-ignore-deadlines t)))
  86                 (tags "-REFILE/"
  87                       ((org-agenda-overriding-header "Tasks to Archive")
  88                        (org-agenda-skip-function 'bh/skip-non-archivable-tasks)
  89                        (org-tags-match-list-sublevels nil))))
  90                nil))))
  91
  92 ; org mode agenda files
  93 (setq org-agenda-files
  94       (quote ("~/projects/org-notes/debbugs.org"
  95               "~/projects/org-notes/notes.org"
  96               "~/projects/org-notes/refile.org"
  97               "~/projects/org-notes/diary.org"
  98               "~/projects/org-notes/ool.org"
  99               "~/projects/org-notes/sndservers.org"
 100               "~/projects/org-notes/chaim.org"
 101               "~/projects/org-notes/wildman.org"
 102               "~/projects/org-notes/uddin.org"
 103           "~/projects/org-notes/reviews.org"
 104           "~/projects/org-notes/hpcbio.org"
 105               "~/projects/org-notes/fh.org")))
 106
 107 (set-register ?n (cons 'file "~/projects/org-notes/notes.org"))
 108 (set-register ?r (cons 'file "~/projects/org-notes/refile.org"))
 109 (set-register ?o (cons 'file "~/projects/org-notes/ool.org"))
 110 (set-register ?s (cons 'file "~/projects/org-notes/sndservers.org"))
 111 (set-register ?c (cons 'file "~/projects/org-notes/chaim.org"))
 112 (set-register ?w (cons 'file "~/projects/org-notes/wildman.org"))
 113 (set-register ?u (cons 'file "~/projects/org-notes/uddin.org"))
 114 (set-register ?R (cons 'file "~/projects/reviews/reviews.org"))
 115 (set-register ?d (cons 'file "~/projects/org-notes/diary.org"))
 116
 117 (setq org-global-properties '(("Effort_ALL 0 0:10 0:30 1:00 2:00 3:00 4:00 5:00 6:00 7:00")))
 118 (setq org-columns-default-format "%40ITEM(Task) %6Effort{:} %CLOCKSUM %PRIORITY %TODO %13SCHEDULED %13DEADLINE %TAGS")
 119
 120 (setq org-default-notes-file "~/projects/org-notes/notes.org")
 121 (setq org-capture-templates  ;; mail-specific note template, identified by "m"
 122       '(("m" "Mail" entry (file+headline "~/projects/org-notes/refile.org" "Mail")
 123          "* %?\n\n  Source: %u, %c\n  %i")
 124         ("t" "todo" entry (file "~/projects/org-notes/refile.org")
 125          "* TODO %?\n%U\n%a\n" :clock-in t :clock-resume t)
 126         ("r" "respond" entry (file "~/projects/org-notes/refile.org")
 127          "* NEXT Respond to %:from on %:subject\nSCHEDULED: %t\n%U\n%a\n" :clock-in t :clock-resume t :immediate-finish t)
 128         ("n" "note" entry (file "~/projects/org-notes/refile.org")
 129          "* %? :NOTE:\n%U\n%a\n" :clock-in t :clock-resume t)
 130         ("s" "schedule" entry (file "~/projects/org-notes/refile.org")
 131          "* %? \n%^{scheduled:}t\n%U\n%a\n" :clock-in t :clock-resume t)
 132         ("j" "Journal" entry (file+datetree "~/projects/org-notes/diary.org")
 133          "* %?\n%U\n" :clock-in t :clock-resume t)
 134         ("w" "org-protocol" entry (file "~/projects/org-notes/refile.org")
 135          "* TODO Review %c\n%U\n" :immediate-finish t)
 136         ("M" "Meeting" entry (file "~/projects/org-notes/refile.org")
 137          "* MEETING with %? :MEETING:\n%U" :clock-in t :clock-resume t)
 138         ("S" "Seminar" entry (file "~/projects/org-notes/refile.org")
 139          "* SEMINAR notes %? :SEMINAR:\n%U" :clock-in t :clock-resume t)
 140         ("P" "Paper to read" entry (file+headline "~/projects/research/papers_to_read.org" "Refile")
 141          "* TODO Get/Read %? \n%U" :clock-in t :clock-resume t)
 142         ("p" "Phone call" entry (file "~/projects/org-notes/refile.org")
 143          "* PHONE %? :PHONE:\n%U" :clock-in t :clock-resume t)
 144         ("J" "job" entry (file "~/projects/org-notes/refile.org")
 145          "* TODO Apply for %a%? :job:\nSCHEDULED: %(format-time-string \"<%Y-%m-%d %a 17:00-17:30>\")\n%U\n" :clock-in t :clock-resume t)
 146         ("h" "Habit" entry (file "~/projects/org-notes/refile.org")
 147          "* NEXT %?\n%U\n%a\nSCHEDULED: %(format-time-string \"<%Y-%m-%d %a .+1d/3d>\")\n:PROPERTIES:\n:STYLE: habit\n:REPEAT_TO_STATE: NEXT\n:END:\n")
 148         )
 149       )
 150
 151 ;; Remove empty LOGBOOK drawers on clock out
 152 (defun bh/remove-empty-drawer-on-clock-out ()
 153   (interactive)
 154   (save-excursion
 155     (beginning-of-line 0)
 156     (org-remove-empty-drawer-at "LOGBOOK" (point))))
 157
 158 (defun my/org-add-id ()
 159   (interactive)
 160   (save-excursion
 161     (if (org-current-level)
 162         ()
 163       (forward-char 1)
 164       )
 165     (org-id-get-create)
 166     )
 167 )
 168
 169 ; org mode configuration from http://doc.norang.ca/org-mode.html
 170 ;; Custom Key Bindings
 171 (global-set-key (kbd "<f12>") 'org-agenda)
 172 (global-set-key (kbd "<f5>") 'bh/org-todo)
 173 (global-set-key (kbd "<S-f5>") 'bh/widen)
 174 (global-set-key (kbd "<f7>") 'bh/set-truncate-lines)
 175 (global-set-key (kbd "<f8>") 'org-cycle-agenda-files)
 176 (global-set-key (kbd "<f9> <f9>") 'bh/show-org-agenda)
 177 (global-set-key (kbd "<f9> b") 'bbdb)
 178 (global-set-key (kbd "<f9> c") 'calendar)
 179 (global-set-key (kbd "<f9> f") 'boxquote-insert-file)
 180 (global-set-key (kbd "<f9> h") 'bh/hide-other)
 181 (global-set-key (kbd "<f9> n") 'bh/toggle-next-task-display)
 182 (global-set-key (kbd "<f9> w") 'widen)
 183
 184 ; change the outline mode prefix from C-c @ to C-c C-2
 185 (setq outline-minor-mode-prefix "C-c C-2")
 186 (add-hook 'outline-minor-mode-hook
 187           (lambda () (local-set-key (kbd "C-c C-2")
 188                                     outline-mode-prefix-map)))
 189
 190 (global-set-key (kbd "<f9> I") 'bh/punch-in)
 191 (global-set-key (kbd "<f9> O") 'bh/punch-out)
 192
 193 (global-set-key (kbd "<f9> o") 'bh/make-org-scratch)
 194
 195 (global-set-key (kbd "<f9> r") 'boxquote-region)
 196 (global-set-key (kbd "<f9> s") 'bh/switch-to-scratch)
 197
 198 (global-set-key (kbd "<f9> t") 'bh/insert-inactive-timestamp)
 199 (global-set-key (kbd "<f9> T") 'bh/toggle-insert-inactive-timestamp)
 200
 201 (global-set-key (kbd "<f9> v") 'visible-mode)
 202 (global-set-key (kbd "<f9> l") 'org-toggle-link-display)
 203 (global-set-key (kbd "<f9> SPC") 'bh/clock-in-last-task)
 204 (global-set-key (kbd "C-<f9>") 'previous-buffer)
 205 (global-set-key (kbd "M-<f9>") 'org-toggle-inline-images)
 206 (global-set-key (kbd "C-x n r") 'narrow-to-region)
 207 (global-set-key (kbd "C-<f10>") 'next-buffer)
 208 (global-set-key (kbd "<f11>") 'org-clock-goto)
 209 (global-set-key (kbd "C-<f11>") 'org-clock-in)
 210 (global-set-key (kbd "C-s-<f12>") 'bh/save-then-publish)
 211 (global-set-key (kbd "C-c c") 'org-capture)
 212
 213 (defun bh/hide-other ()
 214   (interactive)
 215   (save-excursion
 216     (org-back-to-heading 'invisible-ok)
 217     (hide-other)
 218     (org-cycle)
 219     (org-cycle)
 220     (org-cycle)))
 221
 222 (defun bh/set-truncate-lines ()
 223   "Toggle value of truncate-lines and refresh window display."
 224   (interactive)
 225   (setq truncate-lines (not truncate-lines))
 226   ;; now refresh window display (an idiom from simple.el):
 227   (save-excursion
 228     (set-window-start (selected-window)
 229                       (window-start (selected-window)))))
 230
 231 (defun bh/make-org-scratch ()
 232   (interactive)
 233   (find-file "/tmp/publish/scratch.org")
 234   (gnus-make-directory "/tmp/publish"))
 235
 236 (defun bh/switch-to-scratch ()
 237   (interactive)
 238   (switch-to-buffer "*scratch*"))
 239
 240 (setq org-use-fast-todo-selection t)
 241 (setq org-treat-S-cursor-todo-selection-as-state-change nil)
 242
 243 (setq org-todo-keywords
 244       (quote ((sequence "TODO(t)" "NEXT(n)" "|" "DONE(d)")
 245               (sequence "WAITING(w@/!)" "HOLD(h@/!)" "|" "CANCELLED(c@/!)" "PHONE" "MEETING"))))
 246
 247 (setq org-todo-keyword-faces
 248       (quote (("TODO" :foreground "red" :weight bold)
 249               ("NEXT" :foreground "blue" :weight bold)
 250               ("DONE" :foreground "forest green" :weight bold)
 251               ("WAITING" :foreground "orange" :weight bold)
 252               ("HOLD" :foreground "magenta" :weight bold)
 253               ("CANCELLED" :foreground "forest green" :weight bold)
 254               ("MEETING" :foreground "forest green" :weight bold)
 255               ("PHONE" :foreground "forest green" :weight bold))))
 256
 257 (setq org-todo-state-tags-triggers
 258       (quote (("CANCELLED" ("CANCELLED" . t))
 259               ("WAITING" ("WAITING" . t))
 260               ("HOLD" ("WAITING") ("HOLD" . t))
 261               (done ("WAITING") ("HOLD"))
 262               ("TODO" ("WAITING") ("CANCELLED") ("HOLD"))
 263               ("NEXT" ("WAITING") ("CANCELLED") ("HOLD"))
 264               ("DONE" ("WAITING") ("CANCELLED") ("HOLD")))))
 265
 266
 267
 268 (add-hook 'org-clock-out-hook 'bh/remove-empty-drawer-on-clock-out 'append)
 269 ; add ids on creation of nodes
 270 (add-hook 'org-capture-prepare-finalize-hook 'my/org-add-id)
 271 ; create function to create headlines in file. This comes from
 272 ; http://stackoverflow.com/questions/13340616/assign-ids-to-every-entry-in-org-mode
 273 (defun my/org-add-ids-to-headlines-in-file ()
 274   "Add ID properties to all headlines in the current file which
 275 do not already have one."
 276   (interactive)
 277   (org-map-entries 'org-id-get-create))
 278 ; if we wanted to do this to every buffer, do the following:
 279 ; (add-hook 'org-mode-hook
 280 ;           (lambda ()
 281 ;             (add-hook 'before-save-hook 'my/org-add-ids-to-headlines-in-file nil 'local)))
 282
 283
 284 ; resolve clocks after 10 minutes of idle; use xprintidle
 285 ; (setq org-clock-idle-time 10)
 286 ; (setq org-clock-x11idle-program-name "xprintidle")
 287
 288 ; this is from http://doc.norang.ca/org-mode.html#Capture
 289 ; use C-M-r for org mode capture
 290 (global-set-key (kbd "C-M-r") 'org-capture)
 291
 292 ; Targets include this file and any file contributing to the agenda - up to 9 levels deep
 293 (setq org-refile-targets (quote ((nil :maxlevel . 9)
 294                                  (org-agenda-files :maxlevel . 9))))
 295
 296 ; Use full outline paths for refile targets - we file directly with IDO
 297 (setq org-refile-use-outline-path t)
 298
 299 ; Targets complete directly with IDO
 300 (setq org-outline-path-complete-in-steps nil)
 301
 302 ; Allow refile to create parent tasks with confirmation
 303 (setq org-refile-allow-creating-parent-nodes (quote confirm))
 304
 305 ; ; Use IDO for both buffer and file completion and ido-everywhere to t
 306 ; (setq org-completion-use-ido t)
 307 ; (setq ido-everywhere t)
 308 ; (setq ido-max-directory-size 100000)
 309 ; (ido-mode (quote both))
 310 ; ; Use the current window when visiting files and buffers with ido
 311 ; (setq ido-default-file-method 'selected-window)
 312 ; (setq ido-default-buffer-method 'selected-window)
 313 ; ; Use the current window for indirect buffer display
 314 ; (setq org-indirect-buffer-display 'current-window)
 315
 316
 317 ;;;; Refile settings
 318 ; Exclude DONE state tasks from refile targets
 319 (defun bh/verify-refile-target ()
 320   "Exclude todo keywords with a done state from refile targets"
 321   (not (member (nth 2 (org-heading-components)) org-done-keywords)))
 322
 323 (setq org-refile-target-verify-function 'bh/verify-refile-target)
 324
 325 ;; ensure that emacsclient will show just the note to be edited when invoked
 326 ;; from Mutt, and that it will shut down emacsclient once finished;
 327 ;; fallback to legacy behavior when not invoked via org-protocol.
 328 (require 'org-protocol)
 329 (add-hook 'org-capture-mode-hook 'delete-other-windows)
 330 (setq my-org-protocol-flag nil)
 331 (defadvice org-capture-finalize (after delete-frame-at-end activate)
 332   "Delete frame at remember finalization"
 333   (progn (if my-org-protocol-flag (delete-frame))
 334          (setq my-org-protocol-flag nil)))
 335 (defadvice org-capture-refile (around delete-frame-after-refile activate)
 336   "Delete frame at remember refile"
 337   (if my-org-protocol-flag
 338       (progn
 339         (setq my-org-protocol-flag nil)
 340         ad-do-it
 341         (delete-frame))
 342     ad-do-it)
 343   )
 344 (defadvice org-capture-kill (after delete-frame-at-end activate)
 345   "Delete frame at remember abort"
 346   (progn (if my-org-protocol-flag (delete-frame))
 347          (setq my-org-protocol-flag nil)))
 348 (defadvice org-protocol-capture (before set-org-protocol-flag activate)
 349   (setq my-org-protocol-flag t))
 350
 351 (defadvice org-insert-todo-heading (after dla/create-id activate)
 352   (org-id-get-create)
 353   )
 354
 355 ;; org modules
 356 (add-to-list 'org-modules 'org-habit)
 357
 358 ; this comes from http://upsilon.cc/~zack/blog/posts/2010/02/integrating_Mutt_with_Org-mode/
 359 (defun open-mail-in-mutt (message)
 360   "Open a mail message in Mutt, using an external terminal.
 361
 362 Message can be specified either by a path pointing inside a
 363 Maildir, or by Message-ID."
 364   (interactive "MPath or Message-ID: ")
 365   (shell-command
 366    (format "faf xterm -e \"%s %s\""
 367        (substitute-in-file-name "$HOME/bin/mutt_open") message)))
 368
 369 ;; add support for "mutt:ID" links
 370 (org-add-link-type "mutt" 'open-mail-in-mutt)
 371
 372 (defun my-org-mode-setup ()
 373   (load-library "reftex")
 374   (and (buffer-file-name)
 375        (file-exists-p (buffer-file-name))
 376        (progn
 377          (reftex-parse-all)
 378          (reftex-set-cite-format
 379           '((?b . "[[bib:%l][%l-bib]]")
 380             (?n . "[[notes:%l][%l-notes]]")
 381             (?c . "\\cite{%l}")
 382             (?h . "*** %t\n:PROPERTIES:\n:Custom_ID: %l\n:END:\n[[papers:%l][%l xoj]] [[papers-pdf:%l][pdf]]")))
 383          ))
 384   (define-key org-mode-map (kbd "C-c )") 'reftex-citation)
 385   (define-key org-mode-map (kbd "C-c [") 'reftex-citation)
 386   (define-key org-mode-map (kbd "C-c (") 'org-mode-reftex-search)
 387   (define-key org-mode-map (kbd "C-c 0") 'reftex-view-crossref)
 388   )
 389 (add-hook 'org-mode-hook 'my-org-mode-setup)
 390
 391 (defun org-mode-reftex-search ()
 392   (interactive)
 393   (org-open-link-from-string (format "[[notes:%s]]" (first (reftex-citation t)))))
 394
 395 (defun open-research-paper (bibtexkey)
 396   "Open a paper by bibtex key"
 397   (interactive "bibtex key: ")
 398   (shell-command
 399    (format "%s %s"
 400        (substitute-in-file-name "$HOME/bin/bibtex_to_paper") bibtexkey)))
 401 (org-add-link-type "papers" 'open-research-paper)
 402 (defun open-research-paper-pdf (bibtexkey)
 403   "Open a paper pdf by bibtex key"
 404   (interactive "bibtex key: ")
 405   (shell-command
 406    (format "%s -p evince %s"
 407        (substitute-in-file-name "$HOME/bin/bibtex_to_paper") bibtexkey)))
 408 (org-add-link-type "papers-pdf" 'open-research-paper-pdf)
 409
 410 (add-to-list 'org-link-abbrev-alist
 411              '("notes" .
 412                "~/projects/research/paper_notes.org::#%s"))
 413
 414 ; I pretty much always want hiearchical checkboxes
 415 (setq org-hierachical-checkbox-statistics nil)
 416
 417 ;; stolen from
 418 ;; http://www-public.it-sudparis.eu/~berger_o/weblog/2012/03/23/how-to-manage-and-export-bibliographic-notesrefs-in-org-mode/
 419 (defun my-rtcite-export-handler (path desc format)
 420   (message "my-rtcite-export-handler is called : path = %s, desc = %s, format = %s" path desc format)
 421   (let* ((search (when (string-match "::#?\\(.+\\)\\'" path)
 422                    (match-string 1 path)))
 423          (path (substring path 0 (match-beginning 0))))
 424     (cond ((eq format 'latex)
 425            (if (or (not desc)
 426                    (equal 0 (search "rtcite:" desc)))
 427                (format "\\cite{%s}" search)
 428              (format "\\cite[%s]{%s}" desc search))))))
 429
 430 (org-add-link-type "rtcite"
 431                    'org-bibtex-open
 432                    'my-rtcite-export-handler)
 433
 434
 435 (setq-default org-mobile-directory "/rzlab.ucr.edu:/sites/dav.donarmstrong.com/root/org/")
 436 (when (string= system-name "rzlab.ucr.edu")
 437   (setq-default org-mobile-directory "/sites/dav.donarmstrong.com/root/org/"))
 438 (setq-default org-directory "/home/don/org-mode/")
 439 (setq-default org-mobile-inbox-for-pull "/home/don/org-mode/from-mobile.org")
 440
 441 ;; org mode ical export
 442 (setq org-icalendar-timezone "America/Los_Angeles")
 443 (setq org-icalendar-use-scheduled '(todo-start event-if-todo))
 444 ;; we already add the id manually
 445 ;; (setq org-icalendar-store-UID t)
 446
 447 ;; org babel support
 448 (org-babel-do-load-languages
 449  'org-babel-load-languages
 450  '((emacs-lisp . t )
 451    (R . t)
 452    (latex . t)
 453    (ditaa . t)
 454    ))
 455 ;; org-babel-by-backend
 456 (defmacro org-babel-by-backend (&rest body)
 457    `(case (if (boundp 'backend)
 458               (org-export-backend-name backend)
 459             nil) ,@body))
 460
 461
 462
 463 ;; ;; org latex
 464 ;; ;; stolen from http://kieranhealy.org/esk/kjhealy.html
 465 ;; (require 'org-latex)
 466 ;; ;; Choose either listings or minted for exporting source code blocks.
 467 ;; ;; Using minted (as here) requires pygments be installed. To use the
 468 ;; ;; default listings package instead, use
 469 ;; ;; (setq org-latex-listings t)
 470 ;; ;; and change references to "minted" below to "listings"
 471 ;; ; (setq org-latex-listings 'minted)
 472 ;;
 473 ;; ;; default settings for minted code blocks
 474 ;; (setq org-latex-minted-options
 475 ;;       '(;("frame" "single")
 476 ;;         ("bgcolor" "bg") ; bg will need to be defined in the preamble of your document. It's defined in org-preamble-pdflatex.sty and org-preamble-xelatex.sty below.
 477 ;;         ("fontsize" "\\small")
 478 ;;         ))
 479 ;; ;; turn off the default toc behavior; deal with it properly in headers to files.
 480 ;; (defun org-latex-no-toc (depth)
 481 ;;   (when depth
 482 ;;     (format "%% Org-mode is exporting headings to %s levels.\n"
 483 ;;             depth)))
 484 ;; (setq org-latex-format-toc-function 'org-latex-no-toc)
 485
 486 (require 'ox-latex)
 487 (add-to-list 'org-latex-classes
 488              '("memarticle"
 489                "\\documentclass[11pt,oneside,article]{memoir}\n"
 490                ("\\section{%s}" . "\\section*{%s}")
 491                ("\\subsection{%s}" . "\\subsection*{%s}")
 492                ("\\subsubsection{%s}" . "\\subsubsection*{%s}")
 493                ("\\paragraph{%s}" . "\\paragraph*{%s}")
 494                ("\\subparagraph{%s}" . "\\subparagraph*{%s}")))
 495
 496 (setq org-beamer-outline-frame-options "")
 497 (require 'ox-beamer)
 498 (add-to-list 'org-latex-classes
 499              '("beamer"
 500                "\\documentclass[ignorenonframetext]{beamer}
 501 [NO-DEFAULT-PACKAGES]
 502 [PACKAGES]
 503 [EXTRA]"
 504                ("\\section{%s}" . "\\section*{%s}")
 505                ("\\subsection{%s}" . "\\subsection*{%s}")
 506                ("\\subsubsection{%s}" . "\\subsubsection*{%s}")
 507                ("\\paragraph{%s}" . "\\paragraph*{%s}")
 508                ("\\subparagraph{%s}" . "\\subparagraph*{%s}")))
 509
 510 (add-to-list 'org-latex-classes
 511              '("membook"
 512                "\\documentclass[11pt,oneside]{memoir}\n"
 513                ("\\chapter{%s}" . "\\chapter*{%s}")
 514                ("\\section{%s}" . "\\section*{%s}")
 515                ("\\subsection{%s}" . "\\subsection*{%s}")
 516                ("\\subsubsection{%s}" . "\\subsubsection*{%s}")))
 517
 518 (add-to-list 'org-latex-classes
 519              '("letter"
 520                "\\documentclass[11pt]{letter}
 521 [NO-DEFAULT-PACKAGES]
 522 [PACKAGES]
 523 [EXTRA]"
 524        ("\\section{%s}" . "\\section*{%s}")
 525                ("\\subsection{%s}" . "\\subsection*{%s}")
 526                ("\\subsubsection{%s}" . "\\subsubsection*{%s}")
 527                ("\\paragraph{%s}" . "\\paragraph*{%s}")
 528                ("\\subparagraph{%s}" . "\\subparagraph*{%s}")))
 529
 530 ;; Originally taken from Bruno Tavernier: http://thread.gmane.org/gmane.emacs.orgmode/31150/focus=31432
 531 ;; but adapted to use latexmk 4.22 or higher.
 532 (setq org-latex-pdf-process '("latexmk -pdflatex=xelatex -bibtex -use-make -pdf %f"))
 533
 534 ;; Default packages included in /every/ tex file, latex, pdflatex or xelatex
 535 (setq org-latex-default-packages-alist
 536       '())
 537 (setq org-latex-packages-alist
 538       '(("" "graphicx" t)
 539         ("" "fontspec" t)
 540         ("" "xunicode" t)
 541         ("" "hyperref" t)
 542         ("" "url" t)
 543         ("" "rotating" t)
 544         ("" "longtable" nil)
 545         ("" "float" )))
 546
 547 (defun org-create-formula--latex-header ()
 548   "Return LaTeX header appropriate for previewing a LaTeX snippet."
 549   (let ((info (org-combine-plists (org-export--get-global-options
 550                                    (org-export-get-backend 'latex))
 551                                   (org-export--get-inbuffer-options
 552                                    (org-export-get-backend 'latex)))))
 553     (org-latex-guess-babel-language
 554      (org-latex-guess-inputenc
 555       (org-splice-latex-header
 556        org-format-latex-header
 557        org-latex-default-packages-alist
 558        nil t
 559        (plist-get info :latex-header)))
 560      info)))
 561
 562
 563 ; support ignoring headers in org mode export to latex
 564 ; from http://article.gmane.org/gmane.emacs.orgmode/67692
 565 (defadvice org-latex-headline (around my-latex-skip-headlines
 566                                       (headline contents info) activate)
 567   (if (member "ignoreheading" (org-element-property :tags headline))
 568       (setq ad-return-value contents)
 569     ad-do-it))
 570
 571 ;; keep latex logfiles
 572
 573 (setq org-latex-remove-logfiles nil)
 574
 575 ;; helper functions
 576 (defun bh/is-project-p ()
 577   "Any task with a todo keyword subtask"
 578   (save-restriction
 579     (widen)
 580     (let ((has-subtask)
 581           (subtree-end (save-excursion (org-end-of-subtree t)))
 582           (is-a-task (member (nth 2 (org-heading-components)) org-todo-keywords-1)))
 583       (save-excursion
 584         (forward-line 1)
 585         (while (and (not has-subtask)
 586                     (< (point) subtree-end)
 587                     (re-search-forward "^\*+ " subtree-end t))
 588           (when (member (org-get-todo-state) org-todo-keywords-1)
 589             (setq has-subtask t))))
 590       (and is-a-task has-subtask))))
 591
 592 (defun bh/is-project-subtree-p ()
 593   "Any task with a todo keyword that is in a project subtree.
 594 Callers of this function already widen the buffer view."
 595   (let ((task (save-excursion (org-back-to-heading 'invisible-ok)
 596                               (point))))
 597     (save-excursion
 598       (bh/find-project-task)
 599       (if (equal (point) task)
 600           nil
 601         t))))
 602
 603 (defun bh/is-task-p ()
 604   "Any task with a todo keyword and no subtask"
 605   (save-restriction
 606     (widen)
 607     (let ((has-subtask)
 608           (subtree-end (save-excursion (org-end-of-subtree t)))
 609           (is-a-task (member (nth 2 (org-heading-components)) org-todo-keywords-1)))
 610       (save-excursion
 611         (forward-line 1)
 612         (while (and (not has-subtask)
 613                     (< (point) subtree-end)
 614                     (re-search-forward "^\*+ " subtree-end t))
 615           (when (member (org-get-todo-state) org-todo-keywords-1)
 616             (setq has-subtask t))))
 617       (and is-a-task (not has-subtask)))))
 618
 619 (defun bh/is-subproject-p ()
 620   "Any task which is a subtask of another project"
 621   (let ((is-subproject)
 622         (is-a-task (member (nth 2 (org-heading-components)) org-todo-keywords-1)))
 623     (save-excursion
 624       (while (and (not is-subproject) (org-up-heading-safe))
 625         (when (member (nth 2 (org-heading-components)) org-todo-keywords-1)
 626           (setq is-subproject t))))
 627     (and is-a-task is-subproject)))
 628
 629 (defun bh/list-sublevels-for-projects-indented ()
 630   "Set org-tags-match-list-sublevels so when restricted to a subtree we list all subtasks.
 631   This is normally used by skipping functions where this variable is already local to the agenda."
 632   (if (marker-buffer org-agenda-restrict-begin)
 633       (setq org-tags-match-list-sublevels 'indented)
 634     (setq org-tags-match-list-sublevels nil))
 635   nil)
 636
 637 (defun bh/list-sublevels-for-projects ()
 638   "Set org-tags-match-list-sublevels so when restricted to a subtree we list all subtasks.
 639   This is normally used by skipping functions where this variable is already local to the agenda."
 640   (if (marker-buffer org-agenda-restrict-begin)
 641       (setq org-tags-match-list-sublevels t)
 642     (setq org-tags-match-list-sublevels nil))
 643   nil)
 644
 645 (defvar bh/hide-scheduled-and-waiting-next-tasks t)
 646
 647 (defun bh/toggle-next-task-display ()
 648   (interactive)
 649   (setq bh/hide-scheduled-and-waiting-next-tasks (not bh/hide-scheduled-and-waiting-next-tasks))
 650   (when  (equal major-mode 'org-agenda-mode)
 651     (org-agenda-redo))
 652   (message "%s WAITING and SCHEDULED NEXT Tasks" (if bh/hide-scheduled-and-waiting-next-tasks "Hide" "Show")))
 653
 654 (defun bh/skip-stuck-projects ()
 655   "Skip trees that are not stuck projects"
 656   (save-restriction
 657     (widen)
 658     (let ((next-headline (save-excursion (or (outline-next-heading) (point-max)))))
 659       (if (bh/is-project-p)
 660           (let* ((subtree-end (save-excursion (org-end-of-subtree t)))
 661                  (has-next ))
 662             (save-excursion
 663               (forward-line 1)
 664               (while (and (not has-next) (< (point) subtree-end) (re-search-forward "^\\*+ NEXT " subtree-end t))
 665                 (unless (member "WAITING" (org-get-tags-at))
 666                   (setq has-next t))))
 667             (if has-next
 668                 nil
 669               next-headline)) ; a stuck project, has subtasks but no next task
 670         nil))))
 671
 672 (defun bh/skip-non-stuck-projects ()
 673   "Skip trees that are not stuck projects"
 674   ;; (bh/list-sublevels-for-projects-indented)
 675   (save-restriction
 676     (widen)
 677     (let ((next-headline (save-excursion (or (outline-next-heading) (point-max)))))
 678       (if (bh/is-project-p)
 679           (let* ((subtree-end (save-excursion (org-end-of-subtree t)))
 680                  (has-next ))
 681             (save-excursion
 682               (forward-line 1)
 683               (while (and (not has-next) (< (point) subtree-end) (re-search-forward "^\\*+ NEXT " subtree-end t))
 684                 (unless (member "WAITING" (org-get-tags-at))
 685                   (setq has-next t))))
 686             (if has-next
 687                 next-headline
 688               nil)) ; a stuck project, has subtasks but no next task
 689         next-headline))))
 690
 691 (defun bh/skip-non-projects ()
 692   "Skip trees that are not projects"
 693   ;; (bh/list-sublevels-for-projects-indented)
 694   (if (save-excursion (bh/skip-non-stuck-projects))
 695       (save-restriction
 696         (widen)
 697         (let ((subtree-end (save-excursion (org-end-of-subtree t))))
 698           (cond
 699            ((bh/is-project-p)
 700             nil)
 701            ((and (bh/is-project-subtree-p) (not (bh/is-task-p)))
 702             nil)
 703            (t
 704             subtree-end))))
 705     (save-excursion (org-end-of-subtree t))))
 706
 707 (defun bh/skip-project-trees-and-habits ()
 708   "Skip trees that are projects"
 709   (save-restriction
 710     (widen)
 711     (let ((subtree-end (save-excursion (org-end-of-subtree t))))
 712       (cond
 713        ((bh/is-project-p)
 714         subtree-end)
 715        ((org-is-habit-p)
 716         subtree-end)
 717        (t
 718         nil)))))
 719
 720 (defun bh/skip-projects-and-habits-and-single-tasks ()
 721   "Skip trees that are projects, tasks that are habits, single non-project tasks"
 722   (save-restriction
 723     (widen)
 724     (let ((next-headline (save-excursion (or (outline-next-heading) (point-max)))))
 725       (cond
 726        ((org-is-habit-p)
 727         next-headline)
 728        ((and bh/hide-scheduled-and-waiting-next-tasks
 729              (member "WAITING" (org-get-tags-at)))
 730         next-headline)
 731        ((bh/is-project-p)
 732         next-headline)
 733        ((and (bh/is-task-p) (not (bh/is-project-subtree-p)))
 734         next-headline)
 735        (t
 736         nil)))))
 737
 738 (defun bh/skip-project-tasks-maybe ()
 739   "Show tasks related to the current restriction.
 740 When restricted to a project, skip project and sub project tasks, habits, NEXT tasks, and loose tasks.
 741 When not restricted, skip project and sub-project tasks, habits, and project related tasks."
 742   (save-restriction
 743     (widen)
 744     (let* ((subtree-end (save-excursion (org-end-of-subtree t)))
 745            (next-headline (save-excursion (or (outline-next-heading) (point-max))))
 746            (limit-to-project (marker-buffer org-agenda-restrict-begin)))
 747       (cond
 748        ((bh/is-project-p)
 749         next-headline)
 750        ((org-is-habit-p)
 751         subtree-end)
 752        ((and (not limit-to-project)
 753              (bh/is-project-subtree-p))
 754         subtree-end)
 755        ((and limit-to-project
 756              (bh/is-project-subtree-p)
 757              (member (org-get-todo-state) (list "NEXT")))
 758         subtree-end)
 759        (t
 760         nil)))))
 761
 762 (defun bh/skip-project-tasks ()
 763   "Show non-project tasks.
 764 Skip project and sub-project tasks, habits, and project related tasks."
 765   (save-restriction
 766     (widen)
 767     (let* ((subtree-end (save-excursion (org-end-of-subtree t))))
 768       (cond
 769        ((bh/is-project-p)
 770         subtree-end)
 771        ((org-is-habit-p)
 772         subtree-end)
 773        ((bh/is-project-subtree-p)
 774         subtree-end)
 775        (t
 776         nil)))))
 777
 778 (defun bh/skip-non-project-tasks ()
 779   "Show project tasks.
 780 Skip project and sub-project tasks, habits, and loose non-project tasks."
 781   (save-restriction
 782     (widen)
 783     (let* ((subtree-end (save-excursion (org-end-of-subtree t)))
 784            (next-headline (save-excursion (or (outline-next-heading) (point-max)))))
 785       (cond
 786        ((bh/is-project-p)
 787         next-headline)
 788        ((org-is-habit-p)
 789         subtree-end)
 790        ((and (bh/is-project-subtree-p)
 791              (member (org-get-todo-state) (list "NEXT")))
 792         subtree-end)
 793        ((not (bh/is-project-subtree-p))
 794         subtree-end)
 795        (t
 796         nil)))))
 797
 798 (defun bh/skip-projects-and-habits ()
 799   "Skip trees that are projects and tasks that are habits"
 800   (save-restriction
 801     (widen)
 802     (let ((subtree-end (save-excursion (org-end-of-subtree t))))
 803       (cond
 804        ((bh/is-project-p)
 805         subtree-end)
 806        ((org-is-habit-p)
 807         subtree-end)
 808        (t
 809         nil)))))
 810
 811 (defun bh/skip-non-subprojects ()
 812   "Skip trees that are not projects"
 813   (let ((next-headline (save-excursion (outline-next-heading))))
 814     (if (bh/is-subproject-p)
 815         nil
 816       next-headline)))
 817 ;
 818 ;; Resume clocking task when emacs is restarted
 819 (org-clock-persistence-insinuate)
 820 ;;
 821 ;; Show lot of clocking history so it's easy to pick items off the C-F11 list
 822 (setq org-clock-history-length 23)
 823 ;; Resume clocking task on clock-in if the clock is open
 824 (setq org-clock-in-resume t)
 825 ;; Change tasks to NEXT when clocking in
 826 (setq org-clock-in-switch-to-state 'bh/clock-in-to-next)
 827 ;; Separate drawers for clocking and logs
 828 (setq org-drawers (quote ("PROPERTIES" "LOGBOOK")))
 829 ;; Save clock data and state changes and notes in the LOGBOOK drawer
 830 (setq org-clock-into-drawer t)
 831 (setq org-log-into-drawer t)
 832 ;; Sometimes I change tasks I'm clocking quickly - this removes clocked tasks with 0:00 duration
 833 (setq org-clock-out-remove-zero-time-clocks t)
 834 ;; Clock out when moving task to a done state
 835 (setq org-clock-out-when-done t)
 836 ;; Save the running clock and all clock history when exiting Emacs, load it on startup
 837 (setq org-clock-persist t)
 838 ;; Do not prompt to resume an active clock
 839 (setq org-clock-persist-query-resume nil)
 840 ;; Enable auto clock resolution for finding open clocks
 841 (setq org-clock-auto-clock-resolution (quote when-no-clock-is-running))
 842 ;; Include current clocking task in clock reports
 843 (setq org-clock-report-include-clocking-task t)
 844
 845
 846 (defvar bh/keep-clock-running nil)
 847
 848 (defun bh/clock-in-to-next (kw)
 849   "Switch a task from TODO to NEXT when clocking in.
 850 Skips capture tasks, projects, and subprojects.
 851 Switch projects and subprojects from NEXT back to TODO"
 852   (when (not (and (boundp 'org-capture-mode) org-capture-mode))
 853     (cond
 854      ((and (member (org-get-todo-state) (list "TODO"))
 855            (bh/is-task-p))
 856       "NEXT")
 857      ((and (member (org-get-todo-state) (list "NEXT"))
 858            (bh/is-project-p))
 859       "TODO"))))
 860
 861 (defun bh/find-project-task ()
 862   "Move point to the parent (project) task if any"
 863   (save-restriction
 864     (widen)
 865     (let ((parent-task (save-excursion (org-back-to-heading 'invisible-ok) (point))))
 866       (while (org-up-heading-safe)
 867         (when (member (nth 2 (org-heading-components)) org-todo-keywords-1)
 868           (setq parent-task (point))))
 869       (goto-char parent-task)
 870       parent-task)))
 871
 872 (defun bh/punch-in (arg)
 873   "Start continuous clocking and set the default task to the
 874 selected task.  If no task is selected set the Organization task
 875 as the default task."
 876   (interactive "p")
 877   (setq bh/keep-clock-running t)
 878   (if (equal major-mode 'org-agenda-mode)
 879       ;;
 880       ;; We're in the agenda
 881       ;;
 882       (let* ((marker (org-get-at-bol 'org-hd-marker))
 883              (tags (org-with-point-at marker (org-get-tags-at))))
 884         (if (and (eq arg 4) tags)
 885             (org-agenda-clock-in '(16))
 886           (bh/clock-in-organization-task-as-default)))
 887     ;;
 888     ;; We are not in the agenda
 889     ;;
 890     (save-restriction
 891       (widen)
 892       ; Find the tags on the current task
 893       (if (and (equal major-mode 'org-mode) (not (org-before-first-heading-p)) (eq arg 4))
 894           (org-clock-in '(16))
 895         (bh/clock-in-organization-task-as-default)))))
 896
 897 (defun bh/punch-out ()
 898   (interactive)
 899   (setq bh/keep-clock-running nil)
 900   (when (org-clock-is-active)
 901     (org-clock-out))
 902   (org-agenda-remove-restriction-lock))
 903
 904 (defun bh/clock-in-default-task ()
 905   (save-excursion
 906     (org-with-point-at org-clock-default-task
 907       (org-clock-in))))
 908
 909 (defun bh/clock-in-parent-task ()
 910   "Move point to the parent (project) task if any and clock in"
 911   (let ((parent-task))
 912     (save-excursion
 913       (save-restriction
 914         (widen)
 915         (while (and (not parent-task) (org-up-heading-safe))
 916           (when (member (nth 2 (org-heading-components)) org-todo-keywords-1)
 917             (setq parent-task (point))))
 918         (if parent-task
 919             (org-with-point-at parent-task
 920               (org-clock-in))
 921           (when bh/keep-clock-running
 922             (bh/clock-in-default-task)))))))
 923
 924 (defvar bh/organization-task-id "e22cb8bf-07c7-408b-8f60-ff3aadac95e4")
 925
 926 (defun bh/clock-in-organization-task-as-default ()
 927   (interactive)
 928   (org-with-point-at (org-id-find bh/organization-task-id 'marker)
 929     (org-clock-in '(16))))
 930
 931 (defun bh/clock-out-maybe ()
 932   (when (and bh/keep-clock-running
 933              (not org-clock-clocking-in)
 934              (marker-buffer org-clock-default-task)
 935              (not org-clock-resolving-clocks-due-to-idleness))
 936     (bh/clock-in-parent-task)))
 937
 938 (add-hook 'org-clock-out-hook 'bh/clock-out-maybe 'append)
 939
 940 (require 'org-id)
 941 (defun bh/clock-in-task-by-id (id)
 942   "Clock in a task by id"
 943   (org-with-point-at (org-id-find id 'marker)
 944     (org-clock-in nil)))
 945
 946 (defun bh/clock-in-last-task (arg)
 947   "Clock in the interrupted task if there is one
 948 Skip the default task and get the next one.
 949 A prefix arg forces clock in of the default task."
 950   (interactive "p")
 951   (let ((clock-in-to-task
 952          (cond
 953           ((eq arg 4) org-clock-default-task)
 954           ((and (org-clock-is-active)
 955                 (equal org-clock-default-task (cadr org-clock-history)))
 956            (caddr org-clock-history))
 957           ((org-clock-is-active) (cadr org-clock-history))
 958           ((equal org-clock-default-task (car org-clock-history)) (cadr org-clock-history))
 959           (t (car org-clock-history)))))
 960     (widen)
 961     (org-with-point-at clock-in-to-task
 962       (org-clock-in nil))))
 963
 964
 965 ; allow for zero-width-space to be a break in regexp too
 966 (setcar org-emphasis-regexp-components " [:space:] \t('\"{")
 967 (setcar (nthcdr 1 org-emphasis-regexp-components) " [:space:]- \t.,:!?;'\")}\\")
 968 (org-set-emph-re 'org-emphasis-regexp-components org-emphasis-regexp-components)
 969
 970 ;; support inserting screen shots
 971 (defun my/org-insert-screenshot ()
 972   "Take a screenshot into a time stamped unique-named file in the
 973 same directory as the org-buffer and insert a link to this file."
 974   (interactive)
 975   (defvar filename)
 976   (setq filename
 977         (read-file-name
 978          "Screenshot to insert: "
 979          nil
 980          (concat (buffer-file-name) "_" (format-time-string "%Y%m%d_%H%M%S") ".png")
 981          nil
 982          nil
 983          )
 984         )
 985   (call-process "import" nil nil nil filename)
 986   (insert (concat "[[" filename "]]"))
 987   (org-display-inline-images))