emacs_el/configuration/org-mode-configuration.el

   1 (require 'org-id)
   2 (require 'reftex)
   3 (require 'gnus)
   4
   5 ;; The following lines are always needed. Choose your own keys.
   6 (add-to-list 'auto-mode-alist '("\\.\\(org\\|org_archive\\|txt\\)$" . org-mode))
   7 (require 'org)
   8 (global-set-key "\C-cl" 'org-store-link)
   9 (global-set-key "\C-ca" 'org-agenda)
  10 (global-set-key "\C-cb" 'org-iswitchb)
  11 (setq-default org-log-done 'time)
  12 (setq-default org-agenda-ndays 5)
  13
  14 ;; agenda configuration
  15 ;; Do not dim blocked tasks
  16 (setq org-agenda-dim-blocked-tasks nil)
  17
  18 ;; Compact the block agenda view
  19 (setq org-agenda-compact-blocks t)
  20
  21 ;; Custom agenda command definitions
  22 (setq org-agenda-custom-commands
  23       (quote (("N" "Notes" tags "NOTE"
  24                ((org-agenda-overriding-header "Notes")
  25                 (org-tags-match-list-sublevels t)))
  26               ("h" "Habits" tags-todo "STYLE=\"habit\""
  27                ((org-agenda-overriding-header "Habits")
  28                 (org-agenda-sorting-strategy
  29                  '(todo-state-down effort-up category-keep))))
  30               (" " "Agenda"
  31                ((agenda "" nil)
  32                 (tags "REFILE"
  33                       ((org-agenda-overriding-header "Tasks to Refile")
  34                        (org-tags-match-list-sublevels nil)))
  35                 (tags-todo "-CANCELLED/!"
  36                            ((org-agenda-overriding-header "Stuck Projects")
  37                             (org-agenda-skip-function 'bh/skip-non-stuck-projects)
  38                             (org-agenda-sorting-strategy
  39                              '(category-keep))))
  40                 (tags-todo "-HOLD-CANCELLED/!"
  41                            ((org-agenda-overriding-header "Projects")
  42                             (org-agenda-skip-function 'bh/skip-non-projects)
  43                             (org-tags-match-list-sublevels 'indented)
  44                             (org-agenda-sorting-strategy
  45                              '(category-keep))))
  46                 (tags-todo "-CANCELLED/!NEXT"
  47                            ((org-agenda-overriding-header (concat "Project Next Tasks"
  48                                                                   (if bh/hide-scheduled-and-waiting-next-tasks
  49                                                                       ""
  50                                                                     " (including WAITING and SCHEDULED tasks)")))
  51                             (org-agenda-skip-function 'bh/skip-projects-and-habits-and-single-tasks)
  52                             (org-tags-match-list-sublevels t)
  53                             (org-agenda-todo-ignore-scheduled bh/hide-scheduled-and-waiting-next-tasks)
  54                             (org-agenda-todo-ignore-deadlines bh/hide-scheduled-and-waiting-next-tasks)
  55                             (org-agenda-todo-ignore-with-date bh/hide-scheduled-and-waiting-next-tasks)
  56                             (org-agenda-sorting-strategy
  57                              '(todo-state-down effort-up category-keep))))
  58                 (tags-todo "-REFILE-CANCELLED-WAITING-HOLD/!"
  59                            ((org-agenda-overriding-header (concat "Project Subtasks"
  60                                                                   (if bh/hide-scheduled-and-waiting-next-tasks
  61                                                                       ""
  62                                                                     " (including WAITING and SCHEDULED tasks)")))
  63                             (org-agenda-skip-function 'bh/skip-non-project-tasks)
  64                             (org-agenda-todo-ignore-scheduled bh/hide-scheduled-and-waiting-next-tasks)
  65                             (org-agenda-todo-ignore-deadlines bh/hide-scheduled-and-waiting-next-tasks)
  66                             (org-agenda-todo-ignore-with-date bh/hide-scheduled-and-waiting-next-tasks)
  67                             (org-agenda-sorting-strategy
  68                              '(category-keep))))
  69                 (tags-todo "-REFILE-CANCELLED-WAITING-HOLD/!"
  70                            ((org-agenda-overriding-header (concat "Standalone Tasks"
  71                                                                   (if bh/hide-scheduled-and-waiting-next-tasks
  72                                                                       ""
  73                                                                     " (including WAITING and SCHEDULED tasks)")))
  74                             (org-agenda-skip-function 'bh/skip-project-tasks)
  75                             (org-agenda-todo-ignore-scheduled bh/hide-scheduled-and-waiting-next-tasks)
  76                             (org-agenda-todo-ignore-deadlines bh/hide-scheduled-and-waiting-next-tasks)
  77                             (org-agenda-todo-ignore-with-date bh/hide-scheduled-and-waiting-next-tasks)
  78                             (org-agenda-sorting-strategy
  79                              '(category-keep))))
  80                 (tags-todo "-CANCELLED+WAITING|HOLD/!"
  81                            ((org-agenda-overriding-header "Waiting and Postponed Tasks")
  82                             (org-agenda-skip-function 'bh/skip-stuck-projects)
  83                             (org-tags-match-list-sublevels nil)
  84                             (org-agenda-todo-ignore-scheduled t)
  85                             (org-agenda-todo-ignore-deadlines t)))
  86                 (tags "-REFILE/"
  87                       ((org-agenda-overriding-header "Tasks to Archive")
  88                        (org-agenda-skip-function 'bh/skip-non-archivable-tasks)
  89                        (org-tags-match-list-sublevels nil))))
  90                nil))))
  91
  92 ; org mode agenda files
  93 (setq org-agenda-files
  94       (quote ("~/projects/debbugs/debbugs.org"
  95               "~/projects/notes/notes.org"
  96               "~/projects/notes/refile.org"
  97               "~/projects/notes/diary.org"
  98               "~/projects/origins_of_life/ool.org"
  99               "~/projects/sysadmin/sndservers/sndservers.org"
 100               "~/projects/chaim/chaim.org"
 101               "~/projects/chaim/papers/gwas_paper_2012/gwas_paper.org"
 102           "~/projects/reviews/reviews.org"
 103               "~/projects/fh/fh.org")))
 104
 105 (setq org-global-properties '(("Effort_ALL 0 0:10 0:30 1:00 2:00 3:00 4:00 5:00 6:00 7:00")))
 106 (setq org-columns-default-format "%40ITEM(Task) %6Effort{:} %CLOCKSUM %PRIORITY %TODO %13SCHEDULED %13DEADLINE %TAGS")
 107
 108 (setq org-default-notes-file "~/projects/notes/notes.org")
 109 (setq org-capture-templates  ;; mail-specific note template, identified by "m"
 110       '(("m" "Mail" entry (file+headline "~/projects/notes/refile.org" "Mail")
 111          "* %?\n\n  Source: %u, %c\n  %i")
 112         ("t" "todo" entry (file "~/projects/notes/refile.org")
 113          "* TODO %?\n%U\n%a\n" :clock-in t :clock-resume t)
 114         ("r" "respond" entry (file "~/projects/notes/refile.org")
 115          "* NEXT Respond to %:from on %:subject\nSCHEDULED: %t\n%U\n%a\n" :clock-in t :clock-resume t :immediate-finish t)
 116         ("n" "note" entry (file "~/projects/notes/refile.org")
 117          "* %? :NOTE:\n%U\n%a\n" :clock-in t :clock-resume t)
 118         ("s" "schedule" entry (file "~/projects/notes/refile.org")
 119          "* %? \n%^{scheduled:}t\n%U\n%a\n" :clock-in t :clock-resume t)
 120         ("j" "Journal" entry (file+datetree "~/projects/notes/diary.org")
 121          "* %?\n%U\n" :clock-in t :clock-resume t)
 122         ("w" "org-protocol" entry (file "~/projects/notes/refile.org")
 123          "* TODO Review %c\n%U\n" :immediate-finish t)
 124         ("m" "Meeting" entry (file "~/projects/notes/refile.org")
 125          "* MEETING with %? :MEETING:\n%U" :clock-in t :clock-resume t)
 126         ("p" "Phone call" entry (file "~/projects/notes/refile.org")
 127          "* PHONE %? :PHONE:\n%U" :clock-in t :clock-resume t)
 128         ("J" "job" entry (file "~/projects/notes/refile.org")
 129          "* TODO Apply for %a%? :job:\n%U\n" :clock-in t :clock-resume t)
 130         ("h" "Habit" entry (file "~/projects/notes/refile.org")
 131          "* NEXT %?\n%U\n%a\nSCHEDULED: %(format-time-string \"<%Y-%m-%d %a .+1d/3d>\")\n:PROPERTIES:\n:STYLE: habit\n:REPEAT_TO_STATE: NEXT\n:END:\n")
 132         )
 133       )
 134
 135 ;; Remove empty LOGBOOK drawers on clock out
 136 (defun bh/remove-empty-drawer-on-clock-out ()
 137   (interactive)
 138   (save-excursion
 139     (beginning-of-line 0)
 140     (org-remove-empty-drawer-at "LOGBOOK" (point))))
 141
 142 (defun my/org-add-id ()
 143   (interactive)
 144   (save-excursion
 145     (if (org-current-level)
 146         ()
 147       (forward-char 1)
 148       )
 149     (org-id-get-create)
 150     )
 151 )
 152
 153 ; org mode configuration from http://doc.norang.ca/org-mode.html
 154 ;; Custom Key Bindings
 155 (global-set-key (kbd "<f12>") 'org-agenda)
 156 (global-set-key (kbd "<f5>") 'bh/org-todo)
 157 (global-set-key (kbd "<S-f5>") 'bh/widen)
 158 (global-set-key (kbd "<f7>") 'bh/set-truncate-lines)
 159 (global-set-key (kbd "<f8>") 'org-cycle-agenda-files)
 160 (global-set-key (kbd "<f9> <f9>") 'bh/show-org-agenda)
 161 (global-set-key (kbd "<f9> b") 'bbdb)
 162 (global-set-key (kbd "<f9> c") 'calendar)
 163 (global-set-key (kbd "<f9> f") 'boxquote-insert-file)
 164 (global-set-key (kbd "<f9> h") 'bh/hide-other)
 165 (global-set-key (kbd "<f9> n") 'bh/toggle-next-task-display)
 166 (global-set-key (kbd "<f9> w") 'widen)
 167
 168 ; change the outline mode prefix from C-c @ to C-c C-2
 169 (setq outline-minor-mode-prefix "C-c C-2")
 170 (add-hook 'outline-minor-mode-hook
 171           (lambda () (local-set-key (kbd "C-c C-2")
 172                                     outline-mode-prefix-map)))
 173
 174 (global-set-key (kbd "<f9> I") 'bh/punch-in)
 175 (global-set-key (kbd "<f9> O") 'bh/punch-out)
 176
 177 (global-set-key (kbd "<f9> o") 'bh/make-org-scratch)
 178
 179 (global-set-key (kbd "<f9> r") 'boxquote-region)
 180 (global-set-key (kbd "<f9> s") 'bh/switch-to-scratch)
 181
 182 (global-set-key (kbd "<f9> t") 'bh/insert-inactive-timestamp)
 183 (global-set-key (kbd "<f9> T") 'bh/toggle-insert-inactive-timestamp)
 184
 185 (global-set-key (kbd "<f9> v") 'visible-mode)
 186 (global-set-key (kbd "<f9> l") 'org-toggle-link-display)
 187 (global-set-key (kbd "<f9> SPC") 'bh/clock-in-last-task)
 188 (global-set-key (kbd "C-<f9>") 'previous-buffer)
 189 (global-set-key (kbd "M-<f9>") 'org-toggle-inline-images)
 190 (global-set-key (kbd "C-x n r") 'narrow-to-region)
 191 (global-set-key (kbd "C-<f10>") 'next-buffer)
 192 (global-set-key (kbd "<f11>") 'org-clock-goto)
 193 (global-set-key (kbd "C-<f11>") 'org-clock-in)
 194 (global-set-key (kbd "C-s-<f12>") 'bh/save-then-publish)
 195 (global-set-key (kbd "C-c c") 'org-capture)
 196
 197 (defun bh/hide-other ()
 198   (interactive)
 199   (save-excursion
 200     (org-back-to-heading 'invisible-ok)
 201     (hide-other)
 202     (org-cycle)
 203     (org-cycle)
 204     (org-cycle)))
 205
 206 (defun bh/set-truncate-lines ()
 207   "Toggle value of truncate-lines and refresh window display."
 208   (interactive)
 209   (setq truncate-lines (not truncate-lines))
 210   ;; now refresh window display (an idiom from simple.el):
 211   (save-excursion
 212     (set-window-start (selected-window)
 213                       (window-start (selected-window)))))
 214
 215 (defun bh/make-org-scratch ()
 216   (interactive)
 217   (find-file "/tmp/publish/scratch.org")
 218   (gnus-make-directory "/tmp/publish"))
 219
 220 (defun bh/switch-to-scratch ()
 221   (interactive)
 222   (switch-to-buffer "*scratch*"))
 223
 224 (setq org-use-fast-todo-selection t)
 225 (setq org-treat-S-cursor-todo-selection-as-state-change nil)
 226
 227 (setq org-todo-keywords
 228       (quote ((sequence "TODO(t)" "NEXT(n)" "|" "DONE(d)")
 229               (sequence "WAITING(w@/!)" "HOLD(h@/!)" "|" "CANCELLED(c@/!)" "PHONE" "MEETING"))))
 230
 231 (setq org-todo-keyword-faces
 232       (quote (("TODO" :foreground "red" :weight bold)
 233               ("NEXT" :foreground "blue" :weight bold)
 234               ("DONE" :foreground "forest green" :weight bold)
 235               ("WAITING" :foreground "orange" :weight bold)
 236               ("HOLD" :foreground "magenta" :weight bold)
 237               ("CANCELLED" :foreground "forest green" :weight bold)
 238               ("MEETING" :foreground "forest green" :weight bold)
 239               ("PHONE" :foreground "forest green" :weight bold))))
 240
 241 (setq org-todo-state-tags-triggers
 242       (quote (("CANCELLED" ("CANCELLED" . t))
 243               ("WAITING" ("WAITING" . t))
 244               ("HOLD" ("WAITING") ("HOLD" . t))
 245               (done ("WAITING") ("HOLD"))
 246               ("TODO" ("WAITING") ("CANCELLED") ("HOLD"))
 247               ("NEXT" ("WAITING") ("CANCELLED") ("HOLD"))
 248               ("DONE" ("WAITING") ("CANCELLED") ("HOLD")))))
 249
 250
 251
 252 (add-hook 'org-clock-out-hook 'bh/remove-empty-drawer-on-clock-out 'append)
 253 ; add ids on creation of nodes
 254 (add-hook 'org-capture-prepare-finalize-hook 'my/org-add-id)
 255 ; create function to create headlines in file. This comes from
 256 ; http://stackoverflow.com/questions/13340616/assign-ids-to-every-entry-in-org-mode
 257 (defun my/org-add-ids-to-headlines-in-file ()
 258   "Add ID properties to all headlines in the current file which
 259 do not already have one."
 260   (interactive)
 261   (org-map-entries 'org-id-get-create))
 262 ; if we wanted to do this to every buffer, do the following:
 263 ; (add-hook 'org-mode-hook
 264 ;           (lambda ()
 265 ;             (add-hook 'before-save-hook 'my/org-add-ids-to-headlines-in-file nil 'local)))
 266
 267
 268 ; resolve clocks after 10 minutes of idle; use xprintidle
 269 ; (setq org-clock-idle-time 10)
 270 ; (setq org-clock-x11idle-program-name "xprintidle")
 271
 272 ; this is from http://doc.norang.ca/org-mode.html#Capture
 273 ; use C-M-r for org mode capture
 274 (global-set-key (kbd "C-M-r") 'org-capture)
 275
 276 ; Targets include this file and any file contributing to the agenda - up to 9 levels deep
 277 (setq org-refile-targets (quote ((nil :maxlevel . 9)
 278                                  (org-agenda-files :maxlevel . 9))))
 279
 280 ; Use full outline paths for refile targets - we file directly with IDO
 281 (setq org-refile-use-outline-path t)
 282
 283 ; Targets complete directly with IDO
 284 (setq org-outline-path-complete-in-steps nil)
 285
 286 ; Allow refile to create parent tasks with confirmation
 287 (setq org-refile-allow-creating-parent-nodes (quote confirm))
 288
 289 ; Use IDO for both buffer and file completion and ido-everywhere to t
 290 (setq org-completion-use-ido t)
 291 (setq ido-everywhere t)
 292 (setq ido-max-directory-size 100000)
 293 (ido-mode (quote both))
 294 ; Use the current window when visiting files and buffers with ido
 295 (setq ido-default-file-method 'selected-window)
 296 (setq ido-default-buffer-method 'selected-window)
 297 ; Use the current window for indirect buffer display
 298 (setq org-indirect-buffer-display 'current-window)
 299
 300
 301 ;;;; Refile settings
 302 ; Exclude DONE state tasks from refile targets
 303 (defun bh/verify-refile-target ()
 304   "Exclude todo keywords with a done state from refile targets"
 305   (not (member (nth 2 (org-heading-components)) org-done-keywords)))
 306
 307 (setq org-refile-target-verify-function 'bh/verify-refile-target)
 308
 309 ;; ensure that emacsclient will show just the note to be edited when invoked
 310 ;; from Mutt, and that it will shut down emacsclient once finished;
 311 ;; fallback to legacy behavior when not invoked via org-protocol.
 312 (require 'org-protocol)
 313 (add-hook 'org-capture-mode-hook 'delete-other-windows)
 314 (setq my-org-protocol-flag nil)
 315 (defadvice org-capture-finalize (after delete-frame-at-end activate)
 316   "Delete frame at remember finalization"
 317   (progn (if my-org-protocol-flag (delete-frame))
 318          (setq my-org-protocol-flag nil)))
 319 (defadvice org-capture-refile (around delete-frame-after-refile activate)
 320   "Delete frame at remember refile"
 321   (if my-org-protocol-flag
 322       (progn
 323         (setq my-org-protocol-flag nil)
 324         ad-do-it
 325         (delete-frame))
 326     ad-do-it)
 327   )
 328 (defadvice org-capture-kill (after delete-frame-at-end activate)
 329   "Delete frame at remember abort"
 330   (progn (if my-org-protocol-flag (delete-frame))
 331          (setq my-org-protocol-flag nil)))
 332 (defadvice org-protocol-capture (before set-org-protocol-flag activate)
 333   (setq my-org-protocol-flag t))
 334
 335 (defadvice org-insert-todo-heading (after dla/create-id activate)
 336   (org-id-get-create)
 337   )
 338
 339 ;; org modules
 340 (add-to-list 'org-modules 'org-habit)
 341
 342 ; this comes from http://upsilon.cc/~zack/blog/posts/2010/02/integrating_Mutt_with_Org-mode/
 343 (defun open-mail-in-mutt (message)
 344   "Open a mail message in Mutt, using an external terminal.
 345
 346 Message can be specified either by a path pointing inside a
 347 Maildir, or by Message-ID."
 348   (interactive "MPath or Message-ID: ")
 349   (shell-command
 350    (format "faf xterm -e \"%s %s\""
 351        (substitute-in-file-name "$HOME/bin/mutt_open") message)))
 352
 353 ;; add support for "mutt:ID" links
 354 (org-add-link-type "mutt" 'open-mail-in-mutt)
 355
 356 (defun my-org-mode-setup ()
 357   (load-library "reftex")
 358   (and (buffer-file-name)
 359        (file-exists-p (buffer-file-name))
 360        (progn
 361          (reftex-parse-all)
 362          (reftex-set-cite-format
 363           '((?b . "[[bib:%l][%l-bib]]")
 364             (?n . "[[notes:%l][%l-notes]]")
 365             (?c . "\\cite{%l}")
 366             (?h . "*** %t\n:PROPERTIES:\n:Custom_ID: %l\n:END:\n[[papers:%l][%l paper]]")))
 367          ))
 368   (define-key org-mode-map (kbd "C-c )") 'reftex-citation)
 369   (define-key org-mode-map (kbd "C-c [") 'reftex-citation)
 370   (define-key org-mode-map (kbd "C-c (") 'org-mode-reftex-search)
 371   (define-key org-mode-map (kbd "C-c 0") 'reftex-view-crossref)
 372   )
 373 (add-hook 'org-mode-hook 'my-org-mode-setup)
 374
 375 (defun org-mode-reftex-search ()
 376   (interactive)
 377   (org-open-link-from-string (format "[[notes:%s]]" (first (reftex-citation t)))))
 378
 379 (defun open-research-paper (bibtexkey)
 380   "Open a paper by bibtex key"
 381   (interactive "bibtex key: ")
 382   (shell-command
 383    (format "%s %s"
 384        (substitute-in-file-name "$HOME/bin/bibtex_to_paper") bibtexkey)))
 385 (org-add-link-type "papers" 'open-research-paper)
 386
 387 (add-to-list 'org-link-abbrev-alist
 388              '("notes" .
 389                "~/projects/research/paper_notes.org::#%s"))
 390
 391 ; I pretty much always want hiearchical checkboxes
 392 (setq org-hierachical-checkbox-statistics nil)
 393
 394 ;; stolen from
 395 ;; http://www-public.it-sudparis.eu/~berger_o/weblog/2012/03/23/how-to-manage-and-export-bibliographic-notesrefs-in-org-mode/
 396 (defun my-rtcite-export-handler (path desc format)
 397   (message "my-rtcite-export-handler is called : path = %s, desc = %s, format = %s" path desc format)
 398   (let* ((search (when (string-match "::#?\\(.+\\)\\'" path)
 399                    (match-string 1 path)))
 400          (path (substring path 0 (match-beginning 0))))
 401     (cond ((eq format 'latex)
 402            (if (or (not desc)
 403                    (equal 0 (search "rtcite:" desc)))
 404                (format "\\cite{%s}" search)
 405              (format "\\cite[%s]{%s}" desc search))))))
 406
 407 (org-add-link-type "rtcite"
 408                    'org-bibtex-open
 409                    'my-rtcite-export-handler)
 410
 411
 412 (setq-default org-mobile-directory "/rzlab.ucr.edu:/sites/dav.donarmstrong.com/root/org/")
 413 (setq-default org-directory "/home/don/org-mode/")
 414 (setq-default org-mobile-inbox-for-pull "/home/don/org-mode/from-mobile.org")
 415
 416 ;; org mode ical export
 417 (setq org-icalendar-timezone "America/Los_Angeles")
 418 (setq org-icalendar-use-scheduled '(todo-start event-if-todo))
 419 ;; we already add the id manually
 420 ;; (setq org-icalendar-store-UID t)
 421
 422 ;; org babel support
 423 (org-babel-do-load-languages
 424  'org-babel-load-languages
 425  '((emacs-lisp . t )
 426    (R . t)
 427    (latex . t)))
 428 ;; org-babel-by-backend
 429 (defmacro org-babel-by-backend (&rest body)
 430    `(case (if (boundp 'backend)
 431               (org-export-backend-name backend)
 432             nil) ,@body))
 433
 434
 435
 436 ;; org latex
 437 ;; stolen from http://kieranhealy.org/esk/kjhealy.html
 438 (require 'org-latex)
 439 ;; Choose either listings or minted for exporting source code blocks.
 440 ;; Using minted (as here) requires pygments be installed. To use the
 441 ;; default listings package instead, use
 442 ;; (setq org-latex-listings t)
 443 ;; and change references to "minted" below to "listings"
 444 ; (setq org-latex-listings 'minted)
 445
 446 ;; default settings for minted code blocks
 447 (setq org-latex-minted-options
 448       '(;("frame" "single")
 449         ("bgcolor" "bg") ; bg will need to be defined in the preamble of your document. It's defined in org-preamble-pdflatex.sty and org-preamble-xelatex.sty below.
 450         ("fontsize" "\\small")
 451         ))
 452 ;; turn off the default toc behavior; deal with it properly in headers to files.
 453 (defun org-latex-no-toc (depth)
 454   (when depth
 455     (format "%% Org-mode is exporting headings to %s levels.\n"
 456             depth)))
 457 (setq org-latex-format-toc-function 'org-latex-no-toc)
 458
 459 (require 'ox-latex)
 460 (add-to-list 'org-latex-classes
 461              '("memarticle"
 462                "\\documentclass[11pt,oneside,article]{memoir}\n"
 463                ("\\section{%s}" . "\\section*{%s}")
 464                ("\\subsection{%s}" . "\\subsection*{%s}")
 465                ("\\subsubsection{%s}" . "\\subsubsection*{%s}")
 466                ("\\paragraph{%s}" . "\\paragraph*{%s}")
 467                ("\\subparagraph{%s}" . "\\subparagraph*{%s}")))
 468
 469 (add-to-list 'org-latex-classes
 470              '("membook"
 471                "\\documentclass[11pt,oneside]{memoir}\n"
 472                ("\\chapter{%s}" . "\\chapter*{%s}")
 473                ("\\section{%s}" . "\\section*{%s}")
 474                ("\\subsection{%s}" . "\\subsection*{%s}")
 475                ("\\subsubsection{%s}" . "\\subsubsection*{%s}")))
 476
 477 (add-to-list 'org-latex-classes
 478              '("letter"
 479                "\\documentclass[11pt]{letter}
 480 [NO-DEFAULT-PACKAGES]
 481 [PACKAGES]
 482 [EXTRA]"
 483        ("\\section{%s}" . "\\section*{%s}")
 484                ("\\subsection{%s}" . "\\subsection*{%s}")
 485                ("\\subsubsection{%s}" . "\\subsubsection*{%s}")
 486                ("\\paragraph{%s}" . "\\paragraph*{%s}")
 487                ("\\subparagraph{%s}" . "\\subparagraph*{%s}")))
 488
 489 ;; Originally taken from Bruno Tavernier: http://thread.gmane.org/gmane.emacs.orgmode/31150/focus=31432
 490 ;; but adapted to use latexmk 4.22 or higher.
 491 (setq org-latex-pdf-process '("latexmk -pdflatex=xelatex -bibtex -use-make -pdf %f"))
 492
 493 ;; Default packages included in /every/ tex file, latex, pdflatex or xelatex
 494 (setq org-latex-default-packages-alist
 495       '())
 496 (setq org-latex-packages-alist
 497       '(("" "graphicx" t)
 498         ("" "fontspec" t)
 499         ("" "xunicode" t)
 500         ("" "hyperref" t)
 501         ("" "url" t)
 502         ("" "rotating" t)
 503         ("" "longtable" nil)
 504         ("" "float" )))
 505
 506 (defun org-create-formula--latex-header ()
 507   "Return LaTeX header appropriate for previewing a LaTeX snippet."
 508   (let ((info (org-combine-plists (org-export--get-global-options
 509                                    (org-export-get-backend 'latex))
 510                                   (org-export--get-inbuffer-options
 511                                    (org-export-get-backend 'latex)))))
 512     (org-latex-guess-babel-language
 513      (org-latex-guess-inputenc
 514       (org-splice-latex-header
 515        org-format-latex-header
 516        org-latex-default-packages-alist
 517        nil t
 518        (plist-get info :latex-header)))
 519      info)))
 520
 521
 522 ; support ignoring headers in org mode export to latex
 523 ; from http://article.gmane.org/gmane.emacs.orgmode/67692
 524 (defadvice org-latex-headline (around my-latex-skip-headlines
 525                                       (headline contents info) activate)
 526   (if (member "ignoreheading" (org-element-property :tags headline))
 527       (setq ad-return-value contents)
 528     ad-do-it))
 529
 530
 531 ;; helper functions
 532 (defun bh/is-project-p ()
 533   "Any task with a todo keyword subtask"
 534   (save-restriction
 535     (widen)
 536     (let ((has-subtask)
 537           (subtree-end (save-excursion (org-end-of-subtree t)))
 538           (is-a-task (member (nth 2 (org-heading-components)) org-todo-keywords-1)))
 539       (save-excursion
 540         (forward-line 1)
 541         (while (and (not has-subtask)
 542                     (< (point) subtree-end)
 543                     (re-search-forward "^\*+ " subtree-end t))
 544           (when (member (org-get-todo-state) org-todo-keywords-1)
 545             (setq has-subtask t))))
 546       (and is-a-task has-subtask))))
 547
 548 (defun bh/is-project-subtree-p ()
 549   "Any task with a todo keyword that is in a project subtree.
 550 Callers of this function already widen the buffer view."
 551   (let ((task (save-excursion (org-back-to-heading 'invisible-ok)
 552                               (point))))
 553     (save-excursion
 554       (bh/find-project-task)
 555       (if (equal (point) task)
 556           nil
 557         t))))
 558
 559 (defun bh/is-task-p ()
 560   "Any task with a todo keyword and no subtask"
 561   (save-restriction
 562     (widen)
 563     (let ((has-subtask)
 564           (subtree-end (save-excursion (org-end-of-subtree t)))
 565           (is-a-task (member (nth 2 (org-heading-components)) org-todo-keywords-1)))
 566       (save-excursion
 567         (forward-line 1)
 568         (while (and (not has-subtask)
 569                     (< (point) subtree-end)
 570                     (re-search-forward "^\*+ " subtree-end t))
 571           (when (member (org-get-todo-state) org-todo-keywords-1)
 572             (setq has-subtask t))))
 573       (and is-a-task (not has-subtask)))))
 574
 575 (defun bh/is-subproject-p ()
 576   "Any task which is a subtask of another project"
 577   (let ((is-subproject)
 578         (is-a-task (member (nth 2 (org-heading-components)) org-todo-keywords-1)))
 579     (save-excursion
 580       (while (and (not is-subproject) (org-up-heading-safe))
 581         (when (member (nth 2 (org-heading-components)) org-todo-keywords-1)
 582           (setq is-subproject t))))
 583     (and is-a-task is-subproject)))
 584
 585 (defun bh/list-sublevels-for-projects-indented ()
 586   "Set org-tags-match-list-sublevels so when restricted to a subtree we list all subtasks.
 587   This is normally used by skipping functions where this variable is already local to the agenda."
 588   (if (marker-buffer org-agenda-restrict-begin)
 589       (setq org-tags-match-list-sublevels 'indented)
 590     (setq org-tags-match-list-sublevels nil))
 591   nil)
 592
 593 (defun bh/list-sublevels-for-projects ()
 594   "Set org-tags-match-list-sublevels so when restricted to a subtree we list all subtasks.
 595   This is normally used by skipping functions where this variable is already local to the agenda."
 596   (if (marker-buffer org-agenda-restrict-begin)
 597       (setq org-tags-match-list-sublevels t)
 598     (setq org-tags-match-list-sublevels nil))
 599   nil)
 600
 601 (defvar bh/hide-scheduled-and-waiting-next-tasks t)
 602
 603 (defun bh/toggle-next-task-display ()
 604   (interactive)
 605   (setq bh/hide-scheduled-and-waiting-next-tasks (not bh/hide-scheduled-and-waiting-next-tasks))
 606   (when  (equal major-mode 'org-agenda-mode)
 607     (org-agenda-redo))
 608   (message "%s WAITING and SCHEDULED NEXT Tasks" (if bh/hide-scheduled-and-waiting-next-tasks "Hide" "Show")))
 609
 610 (defun bh/skip-stuck-projects ()
 611   "Skip trees that are not stuck projects"
 612   (save-restriction
 613     (widen)
 614     (let ((next-headline (save-excursion (or (outline-next-heading) (point-max)))))
 615       (if (bh/is-project-p)
 616           (let* ((subtree-end (save-excursion (org-end-of-subtree t)))
 617                  (has-next ))
 618             (save-excursion
 619               (forward-line 1)
 620               (while (and (not has-next) (< (point) subtree-end) (re-search-forward "^\\*+ NEXT " subtree-end t))
 621                 (unless (member "WAITING" (org-get-tags-at))
 622                   (setq has-next t))))
 623             (if has-next
 624                 nil
 625               next-headline)) ; a stuck project, has subtasks but no next task
 626         nil))))
 627
 628 (defun bh/skip-non-stuck-projects ()
 629   "Skip trees that are not stuck projects"
 630   ;; (bh/list-sublevels-for-projects-indented)
 631   (save-restriction
 632     (widen)
 633     (let ((next-headline (save-excursion (or (outline-next-heading) (point-max)))))
 634       (if (bh/is-project-p)
 635           (let* ((subtree-end (save-excursion (org-end-of-subtree t)))
 636                  (has-next ))
 637             (save-excursion
 638               (forward-line 1)
 639               (while (and (not has-next) (< (point) subtree-end) (re-search-forward "^\\*+ NEXT " subtree-end t))
 640                 (unless (member "WAITING" (org-get-tags-at))
 641                   (setq has-next t))))
 642             (if has-next
 643                 next-headline
 644               nil)) ; a stuck project, has subtasks but no next task
 645         next-headline))))
 646
 647 (defun bh/skip-non-projects ()
 648   "Skip trees that are not projects"
 649   ;; (bh/list-sublevels-for-projects-indented)
 650   (if (save-excursion (bh/skip-non-stuck-projects))
 651       (save-restriction
 652         (widen)
 653         (let ((subtree-end (save-excursion (org-end-of-subtree t))))
 654           (cond
 655            ((bh/is-project-p)
 656             nil)
 657            ((and (bh/is-project-subtree-p) (not (bh/is-task-p)))
 658             nil)
 659            (t
 660             subtree-end))))
 661     (save-excursion (org-end-of-subtree t))))
 662
 663 (defun bh/skip-project-trees-and-habits ()
 664   "Skip trees that are projects"
 665   (save-restriction
 666     (widen)
 667     (let ((subtree-end (save-excursion (org-end-of-subtree t))))
 668       (cond
 669        ((bh/is-project-p)
 670         subtree-end)
 671        ((org-is-habit-p)
 672         subtree-end)
 673        (t
 674         nil)))))
 675
 676 (defun bh/skip-projects-and-habits-and-single-tasks ()
 677   "Skip trees that are projects, tasks that are habits, single non-project tasks"
 678   (save-restriction
 679     (widen)
 680     (let ((next-headline (save-excursion (or (outline-next-heading) (point-max)))))
 681       (cond
 682        ((org-is-habit-p)
 683         next-headline)
 684        ((and bh/hide-scheduled-and-waiting-next-tasks
 685              (member "WAITING" (org-get-tags-at)))
 686         next-headline)
 687        ((bh/is-project-p)
 688         next-headline)
 689        ((and (bh/is-task-p) (not (bh/is-project-subtree-p)))
 690         next-headline)
 691        (t
 692         nil)))))
 693
 694 (defun bh/skip-project-tasks-maybe ()
 695   "Show tasks related to the current restriction.
 696 When restricted to a project, skip project and sub project tasks, habits, NEXT tasks, and loose tasks.
 697 When not restricted, skip project and sub-project tasks, habits, and project related tasks."
 698   (save-restriction
 699     (widen)
 700     (let* ((subtree-end (save-excursion (org-end-of-subtree t)))
 701            (next-headline (save-excursion (or (outline-next-heading) (point-max))))
 702            (limit-to-project (marker-buffer org-agenda-restrict-begin)))
 703       (cond
 704        ((bh/is-project-p)
 705         next-headline)
 706        ((org-is-habit-p)
 707         subtree-end)
 708        ((and (not limit-to-project)
 709              (bh/is-project-subtree-p))
 710         subtree-end)
 711        ((and limit-to-project
 712              (bh/is-project-subtree-p)
 713              (member (org-get-todo-state) (list "NEXT")))
 714         subtree-end)
 715        (t
 716         nil)))))
 717
 718 (defun bh/skip-project-tasks ()
 719   "Show non-project tasks.
 720 Skip project and sub-project tasks, habits, and project related tasks."
 721   (save-restriction
 722     (widen)
 723     (let* ((subtree-end (save-excursion (org-end-of-subtree t))))
 724       (cond
 725        ((bh/is-project-p)
 726         subtree-end)
 727        ((org-is-habit-p)
 728         subtree-end)
 729        ((bh/is-project-subtree-p)
 730         subtree-end)
 731        (t
 732         nil)))))
 733
 734 (defun bh/skip-non-project-tasks ()
 735   "Show project tasks.
 736 Skip project and sub-project tasks, habits, and loose non-project tasks."
 737   (save-restriction
 738     (widen)
 739     (let* ((subtree-end (save-excursion (org-end-of-subtree t)))
 740            (next-headline (save-excursion (or (outline-next-heading) (point-max)))))
 741       (cond
 742        ((bh/is-project-p)
 743         next-headline)
 744        ((org-is-habit-p)
 745         subtree-end)
 746        ((and (bh/is-project-subtree-p)
 747              (member (org-get-todo-state) (list "NEXT")))
 748         subtree-end)
 749        ((not (bh/is-project-subtree-p))
 750         subtree-end)
 751        (t
 752         nil)))))
 753
 754 (defun bh/skip-projects-and-habits ()
 755   "Skip trees that are projects and tasks that are habits"
 756   (save-restriction
 757     (widen)
 758     (let ((subtree-end (save-excursion (org-end-of-subtree t))))
 759       (cond
 760        ((bh/is-project-p)
 761         subtree-end)
 762        ((org-is-habit-p)
 763         subtree-end)
 764        (t
 765         nil)))))
 766
 767 (defun bh/skip-non-subprojects ()
 768   "Skip trees that are not projects"
 769   (let ((next-headline (save-excursion (outline-next-heading))))
 770     (if (bh/is-subproject-p)
 771         nil
 772       next-headline)))
 773 ;
 774 ;; Resume clocking task when emacs is restarted
 775 (org-clock-persistence-insinuate)
 776 ;;
 777 ;; Show lot of clocking history so it's easy to pick items off the C-F11 list
 778 (setq org-clock-history-length 23)
 779 ;; Resume clocking task on clock-in if the clock is open
 780 (setq org-clock-in-resume t)
 781 ;; Change tasks to NEXT when clocking in
 782 (setq org-clock-in-switch-to-state 'bh/clock-in-to-next)
 783 ;; Separate drawers for clocking and logs
 784 (setq org-drawers (quote ("PROPERTIES" "LOGBOOK")))
 785 ;; Save clock data and state changes and notes in the LOGBOOK drawer
 786 (setq org-clock-into-drawer t)
 787 (setq org-log-into-drawer t)
 788 ;; Sometimes I change tasks I'm clocking quickly - this removes clocked tasks with 0:00 duration
 789 (setq org-clock-out-remove-zero-time-clocks t)
 790 ;; Clock out when moving task to a done state
 791 (setq org-clock-out-when-done t)
 792 ;; Save the running clock and all clock history when exiting Emacs, load it on startup
 793 (setq org-clock-persist t)
 794 ;; Do not prompt to resume an active clock
 795 (setq org-clock-persist-query-resume nil)
 796 ;; Enable auto clock resolution for finding open clocks
 797 (setq org-clock-auto-clock-resolution (quote when-no-clock-is-running))
 798 ;; Include current clocking task in clock reports
 799 (setq org-clock-report-include-clocking-task t)
 800
 801
 802 (defvar bh/keep-clock-running nil)
 803
 804 (defun bh/clock-in-to-next (kw)
 805   "Switch a task from TODO to NEXT when clocking in.
 806 Skips capture tasks, projects, and subprojects.
 807 Switch projects and subprojects from NEXT back to TODO"
 808   (when (not (and (boundp 'org-capture-mode) org-capture-mode))
 809     (cond
 810      ((and (member (org-get-todo-state) (list "TODO"))
 811            (bh/is-task-p))
 812       "NEXT")
 813      ((and (member (org-get-todo-state) (list "NEXT"))
 814            (bh/is-project-p))
 815       "TODO"))))
 816
 817 (defun bh/find-project-task ()
 818   "Move point to the parent (project) task if any"
 819   (save-restriction
 820     (widen)
 821     (let ((parent-task (save-excursion (org-back-to-heading 'invisible-ok) (point))))
 822       (while (org-up-heading-safe)
 823         (when (member (nth 2 (org-heading-components)) org-todo-keywords-1)
 824           (setq parent-task (point))))
 825       (goto-char parent-task)
 826       parent-task)))
 827
 828 (defun bh/punch-in (arg)
 829   "Start continuous clocking and set the default task to the
 830 selected task.  If no task is selected set the Organization task
 831 as the default task."
 832   (interactive "p")
 833   (setq bh/keep-clock-running t)
 834   (if (equal major-mode 'org-agenda-mode)
 835       ;;
 836       ;; We're in the agenda
 837       ;;
 838       (let* ((marker (org-get-at-bol 'org-hd-marker))
 839              (tags (org-with-point-at marker (org-get-tags-at))))
 840         (if (and (eq arg 4) tags)
 841             (org-agenda-clock-in '(16))
 842           (bh/clock-in-organization-task-as-default)))
 843     ;;
 844     ;; We are not in the agenda
 845     ;;
 846     (save-restriction
 847       (widen)
 848       ; Find the tags on the current task
 849       (if (and (equal major-mode 'org-mode) (not (org-before-first-heading-p)) (eq arg 4))
 850           (org-clock-in '(16))
 851         (bh/clock-in-organization-task-as-default)))))
 852
 853 (defun bh/punch-out ()
 854   (interactive)
 855   (setq bh/keep-clock-running nil)
 856   (when (org-clock-is-active)
 857     (org-clock-out))
 858   (org-agenda-remove-restriction-lock))
 859
 860 (defun bh/clock-in-default-task ()
 861   (save-excursion
 862     (org-with-point-at org-clock-default-task
 863       (org-clock-in))))
 864
 865 (defun bh/clock-in-parent-task ()
 866   "Move point to the parent (project) task if any and clock in"
 867   (let ((parent-task))
 868     (save-excursion
 869       (save-restriction
 870         (widen)
 871         (while (and (not parent-task) (org-up-heading-safe))
 872           (when (member (nth 2 (org-heading-components)) org-todo-keywords-1)
 873             (setq parent-task (point))))
 874         (if parent-task
 875             (org-with-point-at parent-task
 876               (org-clock-in))
 877           (when bh/keep-clock-running
 878             (bh/clock-in-default-task)))))))
 879
 880 (defvar bh/organization-task-id "e22cb8bf-07c7-408b-8f60-ff3aadac95e4")
 881
 882 (defun bh/clock-in-organization-task-as-default ()
 883   (interactive)
 884   (org-with-point-at (org-id-find bh/organization-task-id 'marker)
 885     (org-clock-in '(16))))
 886
 887 (defun bh/clock-out-maybe ()
 888   (when (and bh/keep-clock-running
 889              (not org-clock-clocking-in)
 890              (marker-buffer org-clock-default-task)
 891              (not org-clock-resolving-clocks-due-to-idleness))
 892     (bh/clock-in-parent-task)))
 893
 894 (add-hook 'org-clock-out-hook 'bh/clock-out-maybe 'append)
 895
 896 (require 'org-id)
 897 (defun bh/clock-in-task-by-id (id)
 898   "Clock in a task by id"
 899   (org-with-point-at (org-id-find id 'marker)
 900     (org-clock-in nil)))
 901
 902 (defun bh/clock-in-last-task (arg)
 903   "Clock in the interrupted task if there is one
 904 Skip the default task and get the next one.
 905 A prefix arg forces clock in of the default task."
 906   (interactive "p")
 907   (let ((clock-in-to-task
 908          (cond
 909           ((eq arg 4) org-clock-default-task)
 910           ((and (org-clock-is-active)
 911                 (equal org-clock-default-task (cadr org-clock-history)))
 912            (caddr org-clock-history))
 913           ((org-clock-is-active) (cadr org-clock-history))
 914           ((equal org-clock-default-task (car org-clock-history)) (cadr org-clock-history))
 915           (t (car org-clock-history)))))
 916     (widen)
 917     (org-with-point-at clock-in-to-task
 918       (org-clock-in nil))))
 919