emacs_el/configuration/org-mode-configuration.el

   1 (require 'org-id)
   2 (require 'reftex)
   3 (require 'gnus)
   4
   5 ;; The following lines are always needed. Choose your own keys.
   6 (add-to-list 'auto-mode-alist '("\\.\\(org\\|org_archive\\|txt\\)$" . org-mode))
   7 (require 'org)
   8 (global-set-key "\C-cl" 'org-store-link)
   9 (global-set-key "\C-ca" 'org-agenda)
  10 (global-set-key "\C-cb" 'org-iswitchb)
  11 (setq-default org-log-done 'time)
  12 (setq-default org-agenda-ndays 5)
  13
  14 ;; agenda configuration
  15 ;; Do not dim blocked tasks
  16 (setq org-agenda-dim-blocked-tasks nil)
  17
  18 ;; Compact the block agenda view
  19 (setq org-agenda-compact-blocks t)
  20
  21 ;; Custom agenda command definitions
  22 (setq org-agenda-custom-commands
  23       (quote (("N" "Notes" tags "NOTE"
  24                ((org-agenda-overriding-header "Notes")
  25                 (org-tags-match-list-sublevels t)))
  26               ("h" "Habits" tags-todo "STYLE=\"habit\""
  27                ((org-agenda-overriding-header "Habits")
  28                 (org-agenda-sorting-strategy
  29                  '(todo-state-down effort-up category-keep))))
  30               (" " "Agenda"
  31                ((agenda "" nil)
  32                 (tags "REFILE"
  33                       ((org-agenda-overriding-header "Tasks to Refile")
  34                        (org-tags-match-list-sublevels nil)))
  35                 (tags-todo "-CANCELLED/!"
  36                            ((org-agenda-overriding-header "Stuck Projects")
  37                             (org-agenda-skip-function 'bh/skip-non-stuck-projects)
  38                             (org-agenda-sorting-strategy
  39                              '(category-keep))))
  40                 (tags-todo "-HOLD-CANCELLED/!"
  41                            ((org-agenda-overriding-header "Projects")
  42                             (org-agenda-skip-function 'bh/skip-non-projects)
  43                             (org-tags-match-list-sublevels 'indented)
  44                             (org-agenda-sorting-strategy
  45                              '(category-keep))))
  46                 (tags-todo "-CANCELLED/!NEXT"
  47                            ((org-agenda-overriding-header (concat "Project Next Tasks"
  48                                                                   (if bh/hide-scheduled-and-waiting-next-tasks
  49                                                                       ""
  50                                                                     " (including WAITING and SCHEDULED tasks)")))
  51                             (org-agenda-skip-function 'bh/skip-projects-and-habits-and-single-tasks)
  52                             (org-tags-match-list-sublevels t)
  53                             (org-agenda-todo-ignore-scheduled bh/hide-scheduled-and-waiting-next-tasks)
  54                             (org-agenda-todo-ignore-deadlines bh/hide-scheduled-and-waiting-next-tasks)
  55                             (org-agenda-todo-ignore-with-date bh/hide-scheduled-and-waiting-next-tasks)
  56                             (org-agenda-sorting-strategy
  57                              '(todo-state-down effort-up category-keep))))
  58                 (tags-todo "-REFILE-CANCELLED-WAITING-HOLD/!"
  59                            ((org-agenda-overriding-header (concat "Project Subtasks"
  60                                                                   (if bh/hide-scheduled-and-waiting-next-tasks
  61                                                                       ""
  62                                                                     " (including WAITING and SCHEDULED tasks)")))
  63                             (org-agenda-skip-function 'bh/skip-non-project-tasks)
  64                             (org-agenda-todo-ignore-scheduled bh/hide-scheduled-and-waiting-next-tasks)
  65                             (org-agenda-todo-ignore-deadlines bh/hide-scheduled-and-waiting-next-tasks)
  66                             (org-agenda-todo-ignore-with-date bh/hide-scheduled-and-waiting-next-tasks)
  67                             (org-agenda-sorting-strategy
  68                              '(category-keep))))
  69                 (tags-todo "-REFILE-CANCELLED-WAITING-HOLD/!"
  70                            ((org-agenda-overriding-header (concat "Standalone Tasks"
  71                                                                   (if bh/hide-scheduled-and-waiting-next-tasks
  72                                                                       ""
  73                                                                     " (including WAITING and SCHEDULED tasks)")))
  74                             (org-agenda-skip-function 'bh/skip-project-tasks)
  75                             (org-agenda-todo-ignore-scheduled bh/hide-scheduled-and-waiting-next-tasks)
  76                             (org-agenda-todo-ignore-deadlines bh/hide-scheduled-and-waiting-next-tasks)
  77                             (org-agenda-todo-ignore-with-date bh/hide-scheduled-and-waiting-next-tasks)
  78                             (org-agenda-sorting-strategy
  79                              '(category-keep))))
  80                 (tags-todo "-CANCELLED+WAITING|HOLD/!"
  81                            ((org-agenda-overriding-header "Waiting and Postponed Tasks")
  82                             (org-agenda-skip-function 'bh/skip-stuck-projects)
  83                             (org-tags-match-list-sublevels nil)
  84                             (org-agenda-todo-ignore-scheduled t)
  85                             (org-agenda-todo-ignore-deadlines t)))
  86                 (tags "-REFILE/"
  87                       ((org-agenda-overriding-header "Tasks to Archive")
  88                        (org-agenda-skip-function 'bh/skip-non-archivable-tasks)
  89                        (org-tags-match-list-sublevels nil))))
  90                nil))))
  91
  92 ; org mode agenda files
  93 (setq org-agenda-files
  94       (quote ("~/projects/debbugs/debbugs.org"
  95               "~/projects/notes/notes.org"
  96               "~/projects/notes/refile.org"
  97               "~/projects/notes/diary.org"
  98               "~/projects/origins_of_life/ool.org"
  99               "~/projects/sysadmin/sndservers/sndservers.org"
 100               "~/projects/chaim/chaim.org"
 101               "~/projects/chaim/papers/gwas_paper_2012/gwas_paper.org"
 102           "~/projects/reviews/reviews.org"
 103               "~/projects/fh/fh.org")))
 104
 105 (setq org-global-properties '(("Effort_ALL 0 0:10 0:30 1:00 2:00 3:00 4:00 5:00 6:00 7:00")))
 106 (setq org-columns-default-format "%40ITEM(Task) %TAGS %PRIORITY %TODO %13SCHEDULED %13DEADLINE %6Effort{:}  %CLOCKSUM")
 107
 108 (setq org-default-notes-file "~/projects/notes/notes.org")
 109 (setq org-capture-templates  ;; mail-specific note template, identified by "m"
 110       '(("m" "Mail" entry (file+headline "~/projects/notes/refile.org" "Mail")
 111          "* %?\n\n  Source: %u, %c\n  %i")
 112         ("t" "todo" entry (file "~/projects/notes/refile.org")
 113          "* TODO %?\n%U\n%a\n" :clock-in t :clock-resume t)
 114         ("r" "respond" entry (file "~/projects/notes/refile.org")
 115          "* NEXT Respond to %:from on %:subject\nSCHEDULED: %t\n%U\n%a\n" :clock-in t :clock-resume t :immediate-finish t)
 116         ("n" "note" entry (file "~/projects/notes/refile.org")
 117          "* %? :NOTE:\n%U\n%a\n" :clock-in t :clock-resume t)
 118         ("s" "schedule" entry (file "~/projects/notes/refile.org")
 119          "* %? \n%^{scheduled:}t\n%U\n%a\n" :clock-in t :clock-resume t)
 120         ("j" "Journal" entry (file+datetree "~/projects/notes/diary.org")
 121          "* %?\n%U\n" :clock-in t :clock-resume t)
 122         ("w" "org-protocol" entry (file "~/projects/notes/refile.org")
 123          "* TODO Review %c\n%U\n" :immediate-finish t)
 124         ("m" "Meeting" entry (file "~/projects/notes/refile.org")
 125          "* MEETING with %? :MEETING:\n%U" :clock-in t :clock-resume t)
 126         ("p" "Phone call" entry (file "~/projects/notes/refile.org")
 127          "* PHONE %? :PHONE:\n%U" :clock-in t :clock-resume t)
 128         ("J" "job" entry (file "~/projects/notes/refile.org")
 129          "* TODO Apply for %a%? :job:\n%U\n" :clock-in t :clock-resume t)
 130         ("h" "Habit" entry (file "~/projects/notes/refile.org")
 131          "* NEXT %?\n%U\n%a\nSCHEDULED: %(format-time-string \"<%Y-%m-%d %a .+1d/3d>\")\n:PROPERTIES:\n:STYLE: habit\n:REPEAT_TO_STATE: NEXT\n:END:\n")
 132         )
 133       )
 134
 135 ;; Remove empty LOGBOOK drawers on clock out
 136 (defun bh/remove-empty-drawer-on-clock-out ()
 137   (interactive)
 138   (save-excursion
 139     (beginning-of-line 0)
 140     (org-remove-empty-drawer-at "LOGBOOK" (point))))
 141
 142 (defun my/org-add-id ()
 143   (interactive)
 144   (save-excursion
 145     (if (org-current-level)
 146         ()
 147       (forward-char 1)
 148       )
 149     (org-id-get-create)
 150     )
 151 )
 152
 153 ; org mode configuration from http://doc.norang.ca/org-mode.html
 154 ;; Custom Key Bindings
 155 (global-set-key (kbd "<f12>") 'org-agenda)
 156 (global-set-key (kbd "<f5>") 'bh/org-todo)
 157 (global-set-key (kbd "<S-f5>") 'bh/widen)
 158 (global-set-key (kbd "<f7>") 'bh/set-truncate-lines)
 159 (global-set-key (kbd "<f8>") 'org-cycle-agenda-files)
 160 (global-set-key (kbd "<f9> <f9>") 'bh/show-org-agenda)
 161 (global-set-key (kbd "<f9> b") 'bbdb)
 162 (global-set-key (kbd "<f9> c") 'calendar)
 163 (global-set-key (kbd "<f9> f") 'boxquote-insert-file)
 164 (global-set-key (kbd "<f9> h") 'bh/hide-other)
 165 (global-set-key (kbd "<f9> n") 'bh/toggle-next-task-display)
 166 (global-set-key (kbd "<f9> w") 'widen)
 167
 168 ; change the outline mode prefix from C-c @ to C-c C-2
 169 (setq outline-minor-mode-prefix "C-c C-2")
 170 (add-hook 'outline-minor-mode-hook
 171           (lambda () (local-set-key (kbd "C-c C-2")
 172                                     outline-mode-prefix-map)))
 173
 174 (global-set-key (kbd "<f9> I") 'bh/punch-in)
 175 (global-set-key (kbd "<f9> O") 'bh/punch-out)
 176
 177 (global-set-key (kbd "<f9> o") 'bh/make-org-scratch)
 178
 179 (global-set-key (kbd "<f9> r") 'boxquote-region)
 180 (global-set-key (kbd "<f9> s") 'bh/switch-to-scratch)
 181
 182 (global-set-key (kbd "<f9> t") 'bh/insert-inactive-timestamp)
 183 (global-set-key (kbd "<f9> T") 'bh/toggle-insert-inactive-timestamp)
 184
 185 (global-set-key (kbd "<f9> v") 'visible-mode)
 186 (global-set-key (kbd "<f9> l") 'org-toggle-link-display)
 187 (global-set-key (kbd "<f9> SPC") 'bh/clock-in-last-task)
 188 (global-set-key (kbd "C-<f9>") 'previous-buffer)
 189 (global-set-key (kbd "M-<f9>") 'org-toggle-inline-images)
 190 (global-set-key (kbd "C-x n r") 'narrow-to-region)
 191 (global-set-key (kbd "C-<f10>") 'next-buffer)
 192 (global-set-key (kbd "<f11>") 'org-clock-goto)
 193 (global-set-key (kbd "C-<f11>") 'org-clock-in)
 194 (global-set-key (kbd "C-s-<f12>") 'bh/save-then-publish)
 195 (global-set-key (kbd "C-c c") 'org-capture)
 196
 197 (defun bh/hide-other ()
 198   (interactive)
 199   (save-excursion
 200     (org-back-to-heading 'invisible-ok)
 201     (hide-other)
 202     (org-cycle)
 203     (org-cycle)
 204     (org-cycle)))
 205
 206 (defun bh/set-truncate-lines ()
 207   "Toggle value of truncate-lines and refresh window display."
 208   (interactive)
 209   (setq truncate-lines (not truncate-lines))
 210   ;; now refresh window display (an idiom from simple.el):
 211   (save-excursion
 212     (set-window-start (selected-window)
 213                       (window-start (selected-window)))))
 214
 215 (defun bh/make-org-scratch ()
 216   (interactive)
 217   (find-file "/tmp/publish/scratch.org")
 218   (gnus-make-directory "/tmp/publish"))
 219
 220 (defun bh/switch-to-scratch ()
 221   (interactive)
 222   (switch-to-buffer "*scratch*"))
 223
 224 (setq org-use-fast-todo-selection t)
 225 (setq org-treat-S-cursor-todo-selection-as-state-change nil)
 226
 227 (setq org-todo-keywords
 228       (quote ((sequence "TODO(t)" "NEXT(n)" "|" "DONE(d)")
 229               (sequence "WAITING(w@/!)" "HOLD(h@/!)" "|" "CANCELLED(c@/!)" "PHONE" "MEETING"))))
 230
 231 (setq org-todo-keyword-faces
 232       (quote (("TODO" :foreground "red" :weight bold)
 233               ("NEXT" :foreground "blue" :weight bold)
 234               ("DONE" :foreground "forest green" :weight bold)
 235               ("WAITING" :foreground "orange" :weight bold)
 236               ("HOLD" :foreground "magenta" :weight bold)
 237               ("CANCELLED" :foreground "forest green" :weight bold)
 238               ("MEETING" :foreground "forest green" :weight bold)
 239               ("PHONE" :foreground "forest green" :weight bold))))
 240
 241 (setq org-todo-state-tags-triggers
 242       (quote (("CANCELLED" ("CANCELLED" . t))
 243               ("WAITING" ("WAITING" . t))
 244               ("HOLD" ("WAITING") ("HOLD" . t))
 245               (done ("WAITING") ("HOLD"))
 246               ("TODO" ("WAITING") ("CANCELLED") ("HOLD"))
 247               ("NEXT" ("WAITING") ("CANCELLED") ("HOLD"))
 248               ("DONE" ("WAITING") ("CANCELLED") ("HOLD")))))
 249
 250
 251
 252 (add-hook 'org-clock-out-hook 'bh/remove-empty-drawer-on-clock-out 'append)
 253 ; add ids on creation of nodes
 254 (add-hook 'org-capture-prepare-finalize-hook 'my/org-add-id)
 255 ; create function to create headlines in file. This comes from
 256 ; http://stackoverflow.com/questions/13340616/assign-ids-to-every-entry-in-org-mode
 257 (defun my/org-add-ids-to-headlines-in-file ()
 258   "Add ID properties to all headlines in the current file which
 259 do not already have one."
 260   (interactive)
 261   (org-map-entries 'org-id-get-create))
 262 ; if we wanted to do this to every buffer, do the following:
 263 ; (add-hook 'org-mode-hook
 264 ;           (lambda ()
 265 ;             (add-hook 'before-save-hook 'my/org-add-ids-to-headlines-in-file nil 'local)))
 266
 267
 268 ; resolve clocks after 10 minutes of idle; use xprintidle
 269 ; (setq org-clock-idle-time 10)
 270 ; (setq org-clock-x11idle-program-name "xprintidle")
 271
 272 ; this is from http://doc.norang.ca/org-mode.html#Capture
 273 ; use C-M-r for org mode capture
 274 (global-set-key (kbd "C-M-r") 'org-capture)
 275
 276 ; Targets include this file and any file contributing to the agenda - up to 9 levels deep
 277 (setq org-refile-targets (quote ((nil :maxlevel . 9)
 278                                  (org-agenda-files :maxlevel . 9))))
 279
 280 ; Use full outline paths for refile targets - we file directly with IDO
 281 (setq org-refile-use-outline-path t)
 282
 283 ; Targets complete directly with IDO
 284 (setq org-outline-path-complete-in-steps nil)
 285
 286 ; Allow refile to create parent tasks with confirmation
 287 (setq org-refile-allow-creating-parent-nodes (quote confirm))
 288
 289 ; Use IDO for both buffer and file completion and ido-everywhere to t
 290 (setq org-completion-use-ido t)
 291 (setq ido-everywhere t)
 292 (setq ido-max-directory-size 100000)
 293 (ido-mode (quote both))
 294 ; Use the current window when visiting files and buffers with ido
 295 (setq ido-default-file-method 'selected-window)
 296 (setq ido-default-buffer-method 'selected-window)
 297 ; Use the current window for indirect buffer display
 298 (setq org-indirect-buffer-display 'current-window)
 299
 300
 301 ;;;; Refile settings
 302 ; Exclude DONE state tasks from refile targets
 303 (defun bh/verify-refile-target ()
 304   "Exclude todo keywords with a done state from refile targets"
 305   (not (member (nth 2 (org-heading-components)) org-done-keywords)))
 306
 307 (setq org-refile-target-verify-function 'bh/verify-refile-target)
 308
 309 ;; ensure that emacsclient will show just the note to be edited when invoked
 310 ;; from Mutt, and that it will shut down emacsclient once finished;
 311 ;; fallback to legacy behavior when not invoked via org-protocol.
 312 (require 'org-protocol)
 313 (add-hook 'org-capture-mode-hook 'delete-other-windows)
 314 (setq my-org-protocol-flag nil)
 315 (defadvice org-capture-finalize (after delete-frame-at-end activate)
 316   "Delete frame at remember finalization"
 317   (progn (if my-org-protocol-flag (delete-frame))
 318          (setq my-org-protocol-flag nil)))
 319 (defadvice org-capture-refile (around delete-frame-after-refile activate)
 320   "Delete frame at remember refile"
 321   (if my-org-protocol-flag
 322       (progn
 323         (setq my-org-protocol-flag nil)
 324         ad-do-it
 325         (delete-frame))
 326     ad-do-it)
 327   )
 328 (defadvice org-capture-kill (after delete-frame-at-end activate)
 329   "Delete frame at remember abort"
 330   (progn (if my-org-protocol-flag (delete-frame))
 331          (setq my-org-protocol-flag nil)))
 332 (defadvice org-protocol-capture (before set-org-protocol-flag activate)
 333   (setq my-org-protocol-flag t))
 334
 335 (defadvice org-insert-todo-heading (after dla/create-id activate)
 336   (org-id-get-create)
 337   )
 338
 339 ;; org modules
 340 (add-to-list 'org-modules 'org-habit)
 341
 342 ; this comes from http://upsilon.cc/~zack/blog/posts/2010/02/integrating_Mutt_with_Org-mode/
 343 (defun open-mail-in-mutt (message)
 344   "Open a mail message in Mutt, using an external terminal.
 345
 346 Message can be specified either by a path pointing inside a
 347 Maildir, or by Message-ID."
 348   (interactive "MPath or Message-ID: ")
 349   (shell-command
 350    (format "faf xterm -e \"%s %s\""
 351        (substitute-in-file-name "$HOME/bin/mutt_open") message)))
 352
 353 ;; add support for "mutt:ID" links
 354 (org-add-link-type "mutt" 'open-mail-in-mutt)
 355
 356 (defun my-org-mode-setup ()
 357   (load-library "reftex")
 358   (and (buffer-file-name)
 359        (file-exists-p (buffer-file-name))
 360        (progn
 361          (reftex-parse-all)
 362          (reftex-set-cite-format
 363           '((?b . "[[bib:%l][%l-bib]]")
 364             (?n . "[[notes:%l][%l-notes]]")
 365             (?c . "\\cite{%l}")
 366             (?h . "*** %t\n:PROPERTIES:\n:Custom_ID: %l\n:END:\n[[papers:%l][%l paper]]")))
 367          ))
 368   (define-key org-mode-map (kbd "C-c )") 'reftex-citation)
 369   (define-key org-mode-map (kbd "C-c [") 'reftex-citation)
 370   (define-key org-mode-map (kbd "C-c (") 'org-mode-reftex-search)
 371   (define-key org-mode-map (kbd "C-c 0") 'reftex-view-crossref)
 372   )
 373 (add-hook 'org-mode-hook 'my-org-mode-setup)
 374
 375 (defun org-mode-reftex-search ()
 376   (interactive)
 377   (org-open-link-from-string (format "[[notes:%s]]" (first (reftex-citation t)))))
 378
 379 (defun open-research-paper (bibtexkey)
 380   "Open a paper by bibtex key"
 381   (interactive "bibtex key: ")
 382   (shell-command
 383    (format "%s %s"
 384        (substitute-in-file-name "$HOME/bin/bibtex_to_paper") bibtexkey)))
 385 (org-add-link-type "papers" 'open-research-paper)
 386
 387 (add-to-list 'org-link-abbrev-alist
 388              '("notes" .
 389                "~/projects/research/paper_notes.org::#%s"))
 390
 391 ; I pretty much always want hiearchical checkboxes
 392 (setq org-hierachical-checkbox-statistics nil)
 393
 394 ;; stolen from
 395 ;; http://www-public.it-sudparis.eu/~berger_o/weblog/2012/03/23/how-to-manage-and-export-bibliographic-notesrefs-in-org-mode/
 396 (defun my-rtcite-export-handler (path desc format)
 397   (message "my-rtcite-export-handler is called : path = %s, desc = %s, format = %s" path desc format)
 398   (let* ((search (when (string-match "::#?\\(.+\\)\\'" path)
 399                    (match-string 1 path)))
 400          (path (substring path 0 (match-beginning 0))))
 401     (cond ((eq format 'latex)
 402            (if (or (not desc)
 403                    (equal 0 (search "rtcite:" desc)))
 404                (format "\\cite{%s}" search)
 405              (format "\\cite[%s]{%s}" desc search))))))
 406
 407 (org-add-link-type "rtcite"
 408                    'org-bibtex-open
 409                    'my-rtcite-export-handler)
 410
 411
 412 (setq-default org-mobile-directory "/rzlab.ucr.edu:/sites/dav.donarmstrong.com/root/org/")
 413 (setq-default org-directory "/home/don/org-mode/")
 414 (setq-default org-mobile-inbox-for-pull "/home/don/org-mode/from-mobile.org")
 415
 416 ;; org mode ical export
 417 (setq org-icalendar-timezone "America/Los_Angeles")
 418 (setq org-icalendar-use-scheduled '(todo-start event-if-todo))
 419 (setq org-icalendar-store-UID t)
 420
 421 ;; org babel support
 422 (org-babel-do-load-languages
 423  'org-babel-load-languages
 424  '((emacs-lisp . t )
 425    (R . t)
 426    (latex . t)
 427    (ditaa . t)
 428    ))
 429 ;; org-babel-by-backend
 430 (defmacro org-babel-by-backend (&rest body)
 431    `(case (if (boundp 'backend)
 432               (org-export-backend-name backend)
 433             nil) ,@body))
 434
 435
 436
 437 ;; org latex
 438 ;; stolen from http://kieranhealy.org/esk/kjhealy.html
 439 (require 'org-latex)
 440 ;; Choose either listings or minted for exporting source code blocks.
 441 ;; Using minted (as here) requires pygments be installed. To use the
 442 ;; default listings package instead, use
 443 ;; (setq org-latex-listings t)
 444 ;; and change references to "minted" below to "listings"
 445 ; (setq org-latex-listings 'minted)
 446
 447 ;; default settings for minted code blocks
 448 (setq org-latex-minted-options
 449       '(;("frame" "single")
 450         ("bgcolor" "bg") ; bg will need to be defined in the preamble of your document. It's defined in org-preamble-pdflatex.sty and org-preamble-xelatex.sty below.
 451         ("fontsize" "\\small")
 452         ))
 453 ;; turn off the default toc behavior; deal with it properly in headers to files.
 454 (defun org-latex-no-toc (depth)
 455   (when depth
 456     (format "%% Org-mode is exporting headings to %s levels.\n"
 457             depth)))
 458 (setq org-latex-format-toc-function 'org-latex-no-toc)
 459
 460 (require 'ox-latex)
 461 (add-to-list 'org-latex-classes
 462              '("memarticle"
 463                "\\documentclass[11pt,oneside,article]{memoir}\n"
 464                ("\\section{%s}" . "\\section*{%s}")
 465                ("\\subsection{%s}" . "\\subsection*{%s}")
 466                ("\\subsubsection{%s}" . "\\subsubsection*{%s}")
 467                ("\\paragraph{%s}" . "\\paragraph*{%s}")
 468                ("\\subparagraph{%s}" . "\\subparagraph*{%s}")))
 469
 470 (add-to-list 'org-latex-classes
 471              '("beamer"
 472                "\\documentclass[ignorenonframetext]{beamer}
 473 [NO-DEFAULT-PACKAGES]
 474 [PACKAGES]
 475 [EXTRA]"
 476                ("\\section{%s}" . "\\section*{%s}")
 477                ("\\subsection{%s}" . "\\subsection*{%s}")
 478                ("\\subsubsection{%s}" . "\\subsubsection*{%s}")
 479                ("\\paragraph{%s}" . "\\paragraph*{%s}")
 480                ("\\subparagraph{%s}" . "\\subparagraph*{%s}")))
 481
 482 (add-to-list 'org-latex-classes
 483              '("membook"
 484                "\\documentclass[11pt,oneside]{memoir}\n"
 485                ("\\chapter{%s}" . "\\chapter*{%s}")
 486                ("\\section{%s}" . "\\section*{%s}")
 487                ("\\subsection{%s}" . "\\subsection*{%s}")
 488                ("\\subsubsection{%s}" . "\\subsubsection*{%s}")))
 489
 490 (add-to-list 'org-latex-classes
 491              '("letter"
 492                "\\documentclass[11pt]{letter}
 493 [NO-DEFAULT-PACKAGES]
 494 [PACKAGES]
 495 [EXTRA]"
 496        ("\\section{%s}" . "\\section*{%s}")
 497                ("\\subsection{%s}" . "\\subsection*{%s}")
 498                ("\\subsubsection{%s}" . "\\subsubsection*{%s}")
 499                ("\\paragraph{%s}" . "\\paragraph*{%s}")
 500                ("\\subparagraph{%s}" . "\\subparagraph*{%s}")))
 501
 502 ;; Originally taken from Bruno Tavernier: http://thread.gmane.org/gmane.emacs.orgmode/31150/focus=31432
 503 ;; but adapted to use latexmk 4.22 or higher.
 504 (setq org-latex-pdf-process '("latexmk -pdflatex=xelatex -bibtex -use-make -pdf %f"))
 505
 506 ;; Default packages included in /every/ tex file, latex, pdflatex or xelatex
 507 (setq org-latex-default-packages-alist
 508       '())
 509 (setq org-latex-packages-alist
 510       '(("" "graphicx" t)
 511         ("" "fontspec" t)
 512         ("" "xunicode" t)
 513         ("" "hyperref" t)
 514         ("" "url" t)
 515         ("" "rotating" t)
 516         ("" "longtable" nil)
 517         ("" "float" )))
 518
 519 (defun org-create-formula--latex-header ()
 520   "Return LaTeX header appropriate for previewing a LaTeX snippet."
 521   (let ((info (org-combine-plists (org-export--get-global-options
 522                                    (org-export-get-backend 'latex))
 523                                   (org-export--get-inbuffer-options
 524                                    (org-export-get-backend 'latex)))))
 525     (org-latex-guess-babel-language
 526      (org-latex-guess-inputenc
 527       (org-splice-latex-header
 528        org-format-latex-header
 529        org-latex-default-packages-alist
 530        nil t
 531        (plist-get info :latex-header)))
 532      info)))
 533
 534
 535 ; support ignoring headers in org mode export to latex
 536 ; from http://article.gmane.org/gmane.emacs.orgmode/67692
 537 (defadvice org-latex-headline (around my-latex-skip-headlines
 538                                       (headline contents info) activate)
 539   (if (member "ignoreheading" (org-element-property :tags headline))
 540       (setq ad-return-value contents)
 541     ad-do-it))
 542
 543 ;; keep latex logfiles
 544
 545 (setq org-latex-remove-logfiles nil)
 546
 547 ;; helper functions
 548 (defun bh/is-project-p ()
 549   "Any task with a todo keyword subtask"
 550   (save-restriction
 551     (widen)
 552     (let ((has-subtask)
 553           (subtree-end (save-excursion (org-end-of-subtree t)))
 554           (is-a-task (member (nth 2 (org-heading-components)) org-todo-keywords-1)))
 555       (save-excursion
 556         (forward-line 1)
 557         (while (and (not has-subtask)
 558                     (< (point) subtree-end)
 559                     (re-search-forward "^\*+ " subtree-end t))
 560           (when (member (org-get-todo-state) org-todo-keywords-1)
 561             (setq has-subtask t))))
 562       (and is-a-task has-subtask))))
 563
 564 (defun bh/is-project-subtree-p ()
 565   "Any task with a todo keyword that is in a project subtree.
 566 Callers of this function already widen the buffer view."
 567   (let ((task (save-excursion (org-back-to-heading 'invisible-ok)
 568                               (point))))
 569     (save-excursion
 570       (bh/find-project-task)
 571       (if (equal (point) task)
 572           nil
 573         t))))
 574
 575 (defun bh/is-task-p ()
 576   "Any task with a todo keyword and no subtask"
 577   (save-restriction
 578     (widen)
 579     (let ((has-subtask)
 580           (subtree-end (save-excursion (org-end-of-subtree t)))
 581           (is-a-task (member (nth 2 (org-heading-components)) org-todo-keywords-1)))
 582       (save-excursion
 583         (forward-line 1)
 584         (while (and (not has-subtask)
 585                     (< (point) subtree-end)
 586                     (re-search-forward "^\*+ " subtree-end t))
 587           (when (member (org-get-todo-state) org-todo-keywords-1)
 588             (setq has-subtask t))))
 589       (and is-a-task (not has-subtask)))))
 590
 591 (defun bh/is-subproject-p ()
 592   "Any task which is a subtask of another project"
 593   (let ((is-subproject)
 594         (is-a-task (member (nth 2 (org-heading-components)) org-todo-keywords-1)))
 595     (save-excursion
 596       (while (and (not is-subproject) (org-up-heading-safe))
 597         (when (member (nth 2 (org-heading-components)) org-todo-keywords-1)
 598           (setq is-subproject t))))
 599     (and is-a-task is-subproject)))
 600
 601 (defun bh/list-sublevels-for-projects-indented ()
 602   "Set org-tags-match-list-sublevels so when restricted to a subtree we list all subtasks.
 603   This is normally used by skipping functions where this variable is already local to the agenda."
 604   (if (marker-buffer org-agenda-restrict-begin)
 605       (setq org-tags-match-list-sublevels 'indented)
 606     (setq org-tags-match-list-sublevels nil))
 607   nil)
 608
 609 (defun bh/list-sublevels-for-projects ()
 610   "Set org-tags-match-list-sublevels so when restricted to a subtree we list all subtasks.
 611   This is normally used by skipping functions where this variable is already local to the agenda."
 612   (if (marker-buffer org-agenda-restrict-begin)
 613       (setq org-tags-match-list-sublevels t)
 614     (setq org-tags-match-list-sublevels nil))
 615   nil)
 616
 617 (defvar bh/hide-scheduled-and-waiting-next-tasks t)
 618
 619 (defun bh/toggle-next-task-display ()
 620   (interactive)
 621   (setq bh/hide-scheduled-and-waiting-next-tasks (not bh/hide-scheduled-and-waiting-next-tasks))
 622   (when  (equal major-mode 'org-agenda-mode)
 623     (org-agenda-redo))
 624   (message "%s WAITING and SCHEDULED NEXT Tasks" (if bh/hide-scheduled-and-waiting-next-tasks "Hide" "Show")))
 625
 626 (defun bh/skip-stuck-projects ()
 627   "Skip trees that are not stuck projects"
 628   (save-restriction
 629     (widen)
 630     (let ((next-headline (save-excursion (or (outline-next-heading) (point-max)))))
 631       (if (bh/is-project-p)
 632           (let* ((subtree-end (save-excursion (org-end-of-subtree t)))
 633                  (has-next ))
 634             (save-excursion
 635               (forward-line 1)
 636               (while (and (not has-next) (< (point) subtree-end) (re-search-forward "^\\*+ NEXT " subtree-end t))
 637                 (unless (member "WAITING" (org-get-tags-at))
 638                   (setq has-next t))))
 639             (if has-next
 640                 nil
 641               next-headline)) ; a stuck project, has subtasks but no next task
 642         nil))))
 643
 644 (defun bh/skip-non-stuck-projects ()
 645   "Skip trees that are not stuck projects"
 646   ;; (bh/list-sublevels-for-projects-indented)
 647   (save-restriction
 648     (widen)
 649     (let ((next-headline (save-excursion (or (outline-next-heading) (point-max)))))
 650       (if (bh/is-project-p)
 651           (let* ((subtree-end (save-excursion (org-end-of-subtree t)))
 652                  (has-next ))
 653             (save-excursion
 654               (forward-line 1)
 655               (while (and (not has-next) (< (point) subtree-end) (re-search-forward "^\\*+ NEXT " subtree-end t))
 656                 (unless (member "WAITING" (org-get-tags-at))
 657                   (setq has-next t))))
 658             (if has-next
 659                 next-headline
 660               nil)) ; a stuck project, has subtasks but no next task
 661         next-headline))))
 662
 663 (defun bh/skip-non-projects ()
 664   "Skip trees that are not projects"
 665   ;; (bh/list-sublevels-for-projects-indented)
 666   (if (save-excursion (bh/skip-non-stuck-projects))
 667       (save-restriction
 668         (widen)
 669         (let ((subtree-end (save-excursion (org-end-of-subtree t))))
 670           (cond
 671            ((bh/is-project-p)
 672             nil)
 673            ((and (bh/is-project-subtree-p) (not (bh/is-task-p)))
 674             nil)
 675            (t
 676             subtree-end))))
 677     (save-excursion (org-end-of-subtree t))))
 678
 679 (defun bh/skip-project-trees-and-habits ()
 680   "Skip trees that are projects"
 681   (save-restriction
 682     (widen)
 683     (let ((subtree-end (save-excursion (org-end-of-subtree t))))
 684       (cond
 685        ((bh/is-project-p)
 686         subtree-end)
 687        ((org-is-habit-p)
 688         subtree-end)
 689        (t
 690         nil)))))
 691
 692 (defun bh/skip-projects-and-habits-and-single-tasks ()
 693   "Skip trees that are projects, tasks that are habits, single non-project tasks"
 694   (save-restriction
 695     (widen)
 696     (let ((next-headline (save-excursion (or (outline-next-heading) (point-max)))))
 697       (cond
 698        ((org-is-habit-p)
 699         next-headline)
 700        ((and bh/hide-scheduled-and-waiting-next-tasks
 701              (member "WAITING" (org-get-tags-at)))
 702         next-headline)
 703        ((bh/is-project-p)
 704         next-headline)
 705        ((and (bh/is-task-p) (not (bh/is-project-subtree-p)))
 706         next-headline)
 707        (t
 708         nil)))))
 709
 710 (defun bh/skip-project-tasks-maybe ()
 711   "Show tasks related to the current restriction.
 712 When restricted to a project, skip project and sub project tasks, habits, NEXT tasks, and loose tasks.
 713 When not restricted, skip project and sub-project tasks, habits, and project related tasks."
 714   (save-restriction
 715     (widen)
 716     (let* ((subtree-end (save-excursion (org-end-of-subtree t)))
 717            (next-headline (save-excursion (or (outline-next-heading) (point-max))))
 718            (limit-to-project (marker-buffer org-agenda-restrict-begin)))
 719       (cond
 720        ((bh/is-project-p)
 721         next-headline)
 722        ((org-is-habit-p)
 723         subtree-end)
 724        ((and (not limit-to-project)
 725              (bh/is-project-subtree-p))
 726         subtree-end)
 727        ((and limit-to-project
 728              (bh/is-project-subtree-p)
 729              (member (org-get-todo-state) (list "NEXT")))
 730         subtree-end)
 731        (t
 732         nil)))))
 733
 734 (defun bh/skip-project-tasks ()
 735   "Show non-project tasks.
 736 Skip project and sub-project tasks, habits, and project related tasks."
 737   (save-restriction
 738     (widen)
 739     (let* ((subtree-end (save-excursion (org-end-of-subtree t))))
 740       (cond
 741        ((bh/is-project-p)
 742         subtree-end)
 743        ((org-is-habit-p)
 744         subtree-end)
 745        ((bh/is-project-subtree-p)
 746         subtree-end)
 747        (t
 748         nil)))))
 749
 750 (defun bh/skip-non-project-tasks ()
 751   "Show project tasks.
 752 Skip project and sub-project tasks, habits, and loose non-project tasks."
 753   (save-restriction
 754     (widen)
 755     (let* ((subtree-end (save-excursion (org-end-of-subtree t)))
 756            (next-headline (save-excursion (or (outline-next-heading) (point-max)))))
 757       (cond
 758        ((bh/is-project-p)
 759         next-headline)
 760        ((org-is-habit-p)
 761         subtree-end)
 762        ((and (bh/is-project-subtree-p)
 763              (member (org-get-todo-state) (list "NEXT")))
 764         subtree-end)
 765        ((not (bh/is-project-subtree-p))
 766         subtree-end)
 767        (t
 768         nil)))))
 769
 770 (defun bh/skip-projects-and-habits ()
 771   "Skip trees that are projects and tasks that are habits"
 772   (save-restriction
 773     (widen)
 774     (let ((subtree-end (save-excursion (org-end-of-subtree t))))
 775       (cond
 776        ((bh/is-project-p)
 777         subtree-end)
 778        ((org-is-habit-p)
 779         subtree-end)
 780        (t
 781         nil)))))
 782
 783 (defun bh/skip-non-subprojects ()
 784   "Skip trees that are not projects"
 785   (let ((next-headline (save-excursion (outline-next-heading))))
 786     (if (bh/is-subproject-p)
 787         nil
 788       next-headline)))
 789 ;
 790 ;; Resume clocking task when emacs is restarted
 791 (org-clock-persistence-insinuate)
 792 ;;
 793 ;; Show lot of clocking history so it's easy to pick items off the C-F11 list
 794 (setq org-clock-history-length 23)
 795 ;; Resume clocking task on clock-in if the clock is open
 796 (setq org-clock-in-resume t)
 797 ;; Change tasks to NEXT when clocking in
 798 (setq org-clock-in-switch-to-state 'bh/clock-in-to-next)
 799 ;; Separate drawers for clocking and logs
 800 (setq org-drawers (quote ("PROPERTIES" "LOGBOOK")))
 801 ;; Save clock data and state changes and notes in the LOGBOOK drawer
 802 (setq org-clock-into-drawer t)
 803 (setq org-log-into-drawer t)
 804 ;; Sometimes I change tasks I'm clocking quickly - this removes clocked tasks with 0:00 duration
 805 (setq org-clock-out-remove-zero-time-clocks t)
 806 ;; Clock out when moving task to a done state
 807 (setq org-clock-out-when-done t)
 808 ;; Save the running clock and all clock history when exiting Emacs, load it on startup
 809 (setq org-clock-persist t)
 810 ;; Do not prompt to resume an active clock
 811 (setq org-clock-persist-query-resume nil)
 812 ;; Enable auto clock resolution for finding open clocks
 813 (setq org-clock-auto-clock-resolution (quote when-no-clock-is-running))
 814 ;; Include current clocking task in clock reports
 815 (setq org-clock-report-include-clocking-task t)
 816
 817
 818 (defvar bh/keep-clock-running nil)
 819
 820 (defun bh/clock-in-to-next (kw)
 821   "Switch a task from TODO to NEXT when clocking in.
 822 Skips capture tasks, projects, and subprojects.
 823 Switch projects and subprojects from NEXT back to TODO"
 824   (when (not (and (boundp 'org-capture-mode) org-capture-mode))
 825     (cond
 826      ((and (member (org-get-todo-state) (list "TODO"))
 827            (bh/is-task-p))
 828       "NEXT")
 829      ((and (member (org-get-todo-state) (list "NEXT"))
 830            (bh/is-project-p))
 831       "TODO"))))
 832
 833 (defun bh/find-project-task ()
 834   "Move point to the parent (project) task if any"
 835   (save-restriction
 836     (widen)
 837     (let ((parent-task (save-excursion (org-back-to-heading 'invisible-ok) (point))))
 838       (while (org-up-heading-safe)
 839         (when (member (nth 2 (org-heading-components)) org-todo-keywords-1)
 840           (setq parent-task (point))))
 841       (goto-char parent-task)
 842       parent-task)))
 843
 844 (defun bh/punch-in (arg)
 845   "Start continuous clocking and set the default task to the
 846 selected task.  If no task is selected set the Organization task
 847 as the default task."
 848   (interactive "p")
 849   (setq bh/keep-clock-running t)
 850   (if (equal major-mode 'org-agenda-mode)
 851       ;;
 852       ;; We're in the agenda
 853       ;;
 854       (let* ((marker (org-get-at-bol 'org-hd-marker))
 855              (tags (org-with-point-at marker (org-get-tags-at))))
 856         (if (and (eq arg 4) tags)
 857             (org-agenda-clock-in '(16))
 858           (bh/clock-in-organization-task-as-default)))
 859     ;;
 860     ;; We are not in the agenda
 861     ;;
 862     (save-restriction
 863       (widen)
 864       ; Find the tags on the current task
 865       (if (and (equal major-mode 'org-mode) (not (org-before-first-heading-p)) (eq arg 4))
 866           (org-clock-in '(16))
 867         (bh/clock-in-organization-task-as-default)))))
 868
 869 (defun bh/punch-out ()
 870   (interactive)
 871   (setq bh/keep-clock-running nil)
 872   (when (org-clock-is-active)
 873     (org-clock-out))
 874   (org-agenda-remove-restriction-lock))
 875
 876 (defun bh/clock-in-default-task ()
 877   (save-excursion
 878     (org-with-point-at org-clock-default-task
 879       (org-clock-in))))
 880
 881 (defun bh/clock-in-parent-task ()
 882   "Move point to the parent (project) task if any and clock in"
 883   (let ((parent-task))
 884     (save-excursion
 885       (save-restriction
 886         (widen)
 887         (while (and (not parent-task) (org-up-heading-safe))
 888           (when (member (nth 2 (org-heading-components)) org-todo-keywords-1)
 889             (setq parent-task (point))))
 890         (if parent-task
 891             (org-with-point-at parent-task
 892               (org-clock-in))
 893           (when bh/keep-clock-running
 894             (bh/clock-in-default-task)))))))
 895
 896 (defvar bh/organization-task-id "e22cb8bf-07c7-408b-8f60-ff3aadac95e4")
 897
 898 (defun bh/clock-in-organization-task-as-default ()
 899   (interactive)
 900   (org-with-point-at (org-id-find bh/organization-task-id 'marker)
 901     (org-clock-in '(16))))
 902
 903 (defun bh/clock-out-maybe ()
 904   (when (and bh/keep-clock-running
 905              (not org-clock-clocking-in)
 906              (marker-buffer org-clock-default-task)
 907              (not org-clock-resolving-clocks-due-to-idleness))
 908     (bh/clock-in-parent-task)))
 909
 910 (add-hook 'org-clock-out-hook 'bh/clock-out-maybe 'append)
 911
 912 (require 'org-id)
 913 (defun bh/clock-in-task-by-id (id)
 914   "Clock in a task by id"
 915   (org-with-point-at (org-id-find id 'marker)
 916     (org-clock-in nil)))
 917
 918 (defun bh/clock-in-last-task (arg)
 919   "Clock in the interrupted task if there is one
 920 Skip the default task and get the next one.
 921 A prefix arg forces clock in of the default task."
 922   (interactive "p")
 923   (let ((clock-in-to-task
 924          (cond
 925           ((eq arg 4) org-clock-default-task)
 926           ((and (org-clock-is-active)
 927                 (equal org-clock-default-task (cadr org-clock-history)))
 928            (caddr org-clock-history))
 929           ((org-clock-is-active) (cadr org-clock-history))
 930           ((equal org-clock-default-task (car org-clock-history)) (cadr org-clock-history))
 931           (t (car org-clock-history)))))
 932     (widen)
 933     (org-with-point-at clock-in-to-task
 934       (org-clock-in nil))))
 935