emacs_el/configuration/org-mode-configuration.el

   1 (require 'org-id)
   2 (require 'reftex)
   3 (require 'gnus)
   4
   5 ;; The following lines are always needed. Choose your own keys.
   6 (add-to-list 'auto-mode-alist '("\\.\\(org\\|org_archive\\|txt\\)$" . org-mode))
   7 (require 'org)
   8 (global-set-key "\C-cl" 'org-store-link)
   9 (global-set-key "\C-ca" 'org-agenda)
  10 (global-set-key "\C-cb" 'org-iswitchb)
  11 (setq-default org-log-done 'time)
  12 (setq-default org-agenda-ndays 5)
  13
  14 ;; agenda configuration
  15 ;; Do not dim blocked tasks
  16 (setq org-agenda-dim-blocked-tasks nil)
  17
  18 ;; Compact the block agenda view
  19 (setq org-agenda-compact-blocks t)
  20
  21 ;; Custom agenda command definitions
  22 (setq org-agenda-custom-commands
  23       (quote (("N" "Notes" tags "NOTE"
  24                ((org-agenda-overriding-header "Notes")
  25                 (org-tags-match-list-sublevels t)))
  26               ("h" "Habits" tags-todo "STYLE=\"habit\""
  27                ((org-agenda-overriding-header "Habits")
  28                 (org-agenda-sorting-strategy
  29                  '(todo-state-down effort-up category-keep))))
  30               (" " "Agenda"
  31                ((agenda "" nil)
  32                 (tags "REFILE"
  33                       ((org-agenda-overriding-header "Tasks to Refile")
  34                        (org-tags-match-list-sublevels nil)))
  35                 (tags-todo "-CANCELLED/!"
  36                            ((org-agenda-overriding-header "Stuck Projects")
  37                             (org-agenda-skip-function 'bh/skip-non-stuck-projects)
  38                             (org-agenda-sorting-strategy
  39                              '(category-keep))))
  40                 (tags-todo "-HOLD-CANCELLED/!"
  41                            ((org-agenda-overriding-header "Projects")
  42                             (org-agenda-skip-function 'bh/skip-non-projects)
  43                             (org-tags-match-list-sublevels 'indented)
  44                             (org-agenda-sorting-strategy
  45                              '(category-keep))))
  46                 (tags-todo "-CANCELLED/!NEXT"
  47                            ((org-agenda-overriding-header (concat "Project Next Tasks"
  48                                                                   (if bh/hide-scheduled-and-waiting-next-tasks
  49                                                                       ""
  50                                                                     " (including WAITING and SCHEDULED tasks)")))
  51                             (org-agenda-skip-function 'bh/skip-projects-and-habits-and-single-tasks)
  52                             (org-tags-match-list-sublevels t)
  53                             (org-agenda-todo-ignore-scheduled bh/hide-scheduled-and-waiting-next-tasks)
  54                             (org-agenda-todo-ignore-deadlines bh/hide-scheduled-and-waiting-next-tasks)
  55                             (org-agenda-todo-ignore-with-date bh/hide-scheduled-and-waiting-next-tasks)
  56                             (org-agenda-sorting-strategy
  57                              '(todo-state-down effort-up category-keep))))
  58                 (tags-todo "-REFILE-CANCELLED-WAITING-HOLD/!"
  59                            ((org-agenda-overriding-header (concat "Project Subtasks"
  60                                                                   (if bh/hide-scheduled-and-waiting-next-tasks
  61                                                                       ""
  62                                                                     " (including WAITING and SCHEDULED tasks)")))
  63                             (org-agenda-skip-function 'bh/skip-non-project-tasks)
  64                             (org-agenda-todo-ignore-scheduled bh/hide-scheduled-and-waiting-next-tasks)
  65                             (org-agenda-todo-ignore-deadlines bh/hide-scheduled-and-waiting-next-tasks)
  66                             (org-agenda-todo-ignore-with-date bh/hide-scheduled-and-waiting-next-tasks)
  67                             (org-agenda-sorting-strategy
  68                              '(category-keep))))
  69                 (tags-todo "-REFILE-CANCELLED-WAITING-HOLD/!"
  70                            ((org-agenda-overriding-header (concat "Standalone Tasks"
  71                                                                   (if bh/hide-scheduled-and-waiting-next-tasks
  72                                                                       ""
  73                                                                     " (including WAITING and SCHEDULED tasks)")))
  74                             (org-agenda-skip-function 'bh/skip-project-tasks)
  75                             (org-agenda-todo-ignore-scheduled bh/hide-scheduled-and-waiting-next-tasks)
  76                             (org-agenda-todo-ignore-deadlines bh/hide-scheduled-and-waiting-next-tasks)
  77                             (org-agenda-todo-ignore-with-date bh/hide-scheduled-and-waiting-next-tasks)
  78                             (org-agenda-sorting-strategy
  79                              '(category-keep))))
  80                 (tags-todo "-CANCELLED+WAITING|HOLD/!"
  81                            ((org-agenda-overriding-header "Waiting and Postponed Tasks")
  82                             (org-agenda-skip-function 'bh/skip-stuck-projects)
  83                             (org-tags-match-list-sublevels nil)
  84                             (org-agenda-todo-ignore-scheduled t)
  85                             (org-agenda-todo-ignore-deadlines t)))
  86                 (tags "-REFILE/"
  87                       ((org-agenda-overriding-header "Tasks to Archive")
  88                        (org-agenda-skip-function 'bh/skip-non-archivable-tasks)
  89                        (org-tags-match-list-sublevels nil))))
  90                nil))))
  91
  92 ; org mode agenda files
  93 (setq org-agenda-files
  94       (quote ("~/projects/debbugs/debbugs.org"
  95               "~/projects/notes/notes.org"
  96               "~/projects/notes/refile.org"
  97               "~/projects/notes/diary.org"
  98               "~/projects/origins_of_life/ool.org"
  99               "~/projects/sysadmin/sndservers/sndservers.org"
 100               "~/projects/chaim/chaim.org"
 101               "~/projects/chaim/papers/gwas_paper_2012/gwas_paper.org"
 102           "~/projects/reviews/reviews.org"
 103               "~/projects/fh/fh.org")))
 104
 105 (setq org-global-properties '(("Effort_ALL 0 0:10 0:30 1:00 2:00 3:00 4:00 5:00 6:00 7:00")))
 106 (setq org-columns-default-format "%40ITEM(Task) %6Effort{:} %CLOCKSUM %PRIORITY %TODO %13SCHEDULED %13DEADLINE %TAGS")
 107
 108 (setq org-default-notes-file "~/projects/notes/notes.org")
 109 (setq org-capture-templates  ;; mail-specific note template, identified by "m"
 110       '(("m" "Mail" entry (file+headline "~/projects/notes/refile.org" "Mail")
 111          "* %?\n\n  Source: %u, %c\n  %i")
 112         ("t" "todo" entry (file "~/projects/notes/refile.org")
 113          "* TODO %?\n%U\n%a\n" :clock-in t :clock-resume t)
 114         ("r" "respond" entry (file "~/projects/notes/refile.org")
 115          "* NEXT Respond to %:from on %:subject\nSCHEDULED: %t\n%U\n%a\n" :clock-in t :clock-resume t :immediate-finish t)
 116         ("n" "note" entry (file "~/projects/notes/refile.org")
 117          "* %? :NOTE:\n%U\n%a\n" :clock-in t :clock-resume t)
 118         ("s" "schedule" entry (file "~/projects/notes/refile.org")
 119          "* %? \n%^{scheduled:}t\n%U\n%a\n" :clock-in t :clock-resume t)
 120         ("j" "Journal" entry (file+datetree "~/projects/notes/diary.org")
 121          "* %?\n%U\n" :clock-in t :clock-resume t)
 122         ("w" "org-protocol" entry (file "~/projects/notes/refile.org")
 123          "* TODO Review %c\n%U\n" :immediate-finish t)
 124         ("m" "Meeting" entry (file "~/projects/notes/refile.org")
 125          "* MEETING with %? :MEETING:\n%U" :clock-in t :clock-resume t)
 126         ("p" "Phone call" entry (file "~/projects/notes/refile.org")
 127          "* PHONE %? :PHONE:\n%U" :clock-in t :clock-resume t)
 128         ("J" "job" entry (file "~/projects/notes/refile.org")
 129          "* TODO Apply for %a%? :job:\n%U\n" :clock-in t :clock-resume t)
 130         ("h" "Habit" entry (file "~/projects/notes/refile.org")
 131          "* NEXT %?\n%U\n%a\nSCHEDULED: %(format-time-string \"<%Y-%m-%d %a .+1d/3d>\")\n:PROPERTIES:\n:STYLE: habit\n:REPEAT_TO_STATE: NEXT\n:END:\n")
 132         )
 133       )
 134
 135 ;; Remove empty LOGBOOK drawers on clock out
 136 (defun bh/remove-empty-drawer-on-clock-out ()
 137   (interactive)
 138   (save-excursion
 139     (beginning-of-line 0)
 140     (org-remove-empty-drawer-at "LOGBOOK" (point))))
 141
 142 (defun my/org-add-id ()
 143   (interactive)
 144   (save-excursion
 145     (if (org-current-level)
 146         ()
 147       (forward-char 1)
 148       )
 149     (org-id-get-create)
 150     )
 151 )
 152
 153 ; org mode configuration from http://doc.norang.ca/org-mode.html
 154 ;; Custom Key Bindings
 155 (global-set-key (kbd "<f12>") 'org-agenda)
 156 (global-set-key (kbd "<f5>") 'bh/org-todo)
 157 (global-set-key (kbd "<S-f5>") 'bh/widen)
 158 (global-set-key (kbd "<f7>") 'bh/set-truncate-lines)
 159 (global-set-key (kbd "<f8>") 'org-cycle-agenda-files)
 160 (global-set-key (kbd "<f9> <f9>") 'bh/show-org-agenda)
 161 (global-set-key (kbd "<f9> b") 'bbdb)
 162 (global-set-key (kbd "<f9> c") 'calendar)
 163 (global-set-key (kbd "<f9> f") 'boxquote-insert-file)
 164 (global-set-key (kbd "<f9> h") 'bh/hide-other)
 165 (global-set-key (kbd "<f9> n") 'bh/toggle-next-task-display)
 166 (global-set-key (kbd "<f9> w") 'widen)
 167
 168 ; change the outline mode prefix from C-c @ to C-c C-2
 169 (setq outline-minor-mode-prefix "C-c C-2")
 170 (add-hook 'outline-minor-mode-hook
 171           (lambda () (local-set-key (kbd "C-c C-2")
 172                                     outline-mode-prefix-map)))
 173
 174 (global-set-key (kbd "<f9> I") 'bh/punch-in)
 175 (global-set-key (kbd "<f9> O") 'bh/punch-out)
 176
 177 (global-set-key (kbd "<f9> o") 'bh/make-org-scratch)
 178
 179 (global-set-key (kbd "<f9> r") 'boxquote-region)
 180 (global-set-key (kbd "<f9> s") 'bh/switch-to-scratch)
 181
 182 (global-set-key (kbd "<f9> t") 'bh/insert-inactive-timestamp)
 183 (global-set-key (kbd "<f9> T") 'bh/toggle-insert-inactive-timestamp)
 184
 185 (global-set-key (kbd "<f9> v") 'visible-mode)
 186 (global-set-key (kbd "<f9> l") 'org-toggle-link-display)
 187 (global-set-key (kbd "<f9> SPC") 'bh/clock-in-last-task)
 188 (global-set-key (kbd "C-<f9>") 'previous-buffer)
 189 (global-set-key (kbd "M-<f9>") 'org-toggle-inline-images)
 190 (global-set-key (kbd "C-x n r") 'narrow-to-region)
 191 (global-set-key (kbd "C-<f10>") 'next-buffer)
 192 (global-set-key (kbd "<f11>") 'org-clock-goto)
 193 (global-set-key (kbd "C-<f11>") 'org-clock-in)
 194 (global-set-key (kbd "C-s-<f12>") 'bh/save-then-publish)
 195 (global-set-key (kbd "C-c c") 'org-capture)
 196
 197 (defun bh/hide-other ()
 198   (interactive)
 199   (save-excursion
 200     (org-back-to-heading 'invisible-ok)
 201     (hide-other)
 202     (org-cycle)
 203     (org-cycle)
 204     (org-cycle)))
 205
 206 (defun bh/set-truncate-lines ()
 207   "Toggle value of truncate-lines and refresh window display."
 208   (interactive)
 209   (setq truncate-lines (not truncate-lines))
 210   ;; now refresh window display (an idiom from simple.el):
 211   (save-excursion
 212     (set-window-start (selected-window)
 213                       (window-start (selected-window)))))
 214
 215 (defun bh/make-org-scratch ()
 216   (interactive)
 217   (find-file "/tmp/publish/scratch.org")
 218   (gnus-make-directory "/tmp/publish"))
 219
 220 (defun bh/switch-to-scratch ()
 221   (interactive)
 222   (switch-to-buffer "*scratch*"))
 223
 224 (setq org-use-fast-todo-selection t)
 225 (setq org-treat-S-cursor-todo-selection-as-state-change nil)
 226
 227 (setq org-todo-keywords
 228       (quote ((sequence "TODO(t)" "NEXT(n)" "|" "DONE(d)")
 229               (sequence "WAITING(w@/!)" "HOLD(h@/!)" "|" "CANCELLED(c@/!)" "PHONE" "MEETING"))))
 230
 231 (setq org-todo-keyword-faces
 232       (quote (("TODO" :foreground "red" :weight bold)
 233               ("NEXT" :foreground "blue" :weight bold)
 234               ("DONE" :foreground "forest green" :weight bold)
 235               ("WAITING" :foreground "orange" :weight bold)
 236               ("HOLD" :foreground "magenta" :weight bold)
 237               ("CANCELLED" :foreground "forest green" :weight bold)
 238               ("MEETING" :foreground "forest green" :weight bold)
 239               ("PHONE" :foreground "forest green" :weight bold))))
 240
 241 (setq org-todo-state-tags-triggers
 242       (quote (("CANCELLED" ("CANCELLED" . t))
 243               ("WAITING" ("WAITING" . t))
 244               ("HOLD" ("WAITING") ("HOLD" . t))
 245               (done ("WAITING") ("HOLD"))
 246               ("TODO" ("WAITING") ("CANCELLED") ("HOLD"))
 247               ("NEXT" ("WAITING") ("CANCELLED") ("HOLD"))
 248               ("DONE" ("WAITING") ("CANCELLED") ("HOLD")))))
 249
 250
 251
 252 (add-hook 'org-clock-out-hook 'bh/remove-empty-drawer-on-clock-out 'append)
 253 ; add ids on creation of nodes
 254 (add-hook 'org-capture-prepare-finalize-hook 'my/org-add-id)
 255 ; create function to create headlines in file. This comes from
 256 ; http://stackoverflow.com/questions/13340616/assign-ids-to-every-entry-in-org-mode
 257 (defun my/org-add-ids-to-headlines-in-file ()
 258   "Add ID properties to all headlines in the current file which
 259 do not already have one."
 260   (interactive)
 261   (org-map-entries 'org-id-get-create))
 262 ; if we wanted to do this to every buffer, do the following:
 263 ; (add-hook 'org-mode-hook
 264 ;           (lambda ()
 265 ;             (add-hook 'before-save-hook 'my/org-add-ids-to-headlines-in-file nil 'local)))
 266
 267
 268 ; resolve clocks after 10 minutes of idle; use xprintidle
 269 ; (setq org-clock-idle-time 10)
 270 ; (setq org-clock-x11idle-program-name "xprintidle")
 271
 272 ; this is from http://doc.norang.ca/org-mode.html#Capture
 273 ; use C-M-r for org mode capture
 274 (global-set-key (kbd "C-M-r") 'org-capture)
 275
 276 ; Targets include this file and any file contributing to the agenda - up to 9 levels deep
 277 (setq org-refile-targets (quote ((nil :maxlevel . 9)
 278                                  (org-agenda-files :maxlevel . 9))))
 279
 280 ; Use full outline paths for refile targets - we file directly with IDO
 281 (setq org-refile-use-outline-path t)
 282
 283 ; Targets complete directly with IDO
 284 (setq org-outline-path-complete-in-steps nil)
 285
 286 ; Allow refile to create parent tasks with confirmation
 287 (setq org-refile-allow-creating-parent-nodes (quote confirm))
 288
 289 ; Use IDO for both buffer and file completion and ido-everywhere to t
 290 (setq org-completion-use-ido t)
 291 (setq ido-everywhere t)
 292 (setq ido-max-directory-size 100000)
 293 (ido-mode (quote both))
 294 ; Use the current window when visiting files and buffers with ido
 295 (setq ido-default-file-method 'selected-window)
 296 (setq ido-default-buffer-method 'selected-window)
 297 ; Use the current window for indirect buffer display
 298 (setq org-indirect-buffer-display 'current-window)
 299
 300
 301 ;;;; Refile settings
 302 ; Exclude DONE state tasks from refile targets
 303 (defun bh/verify-refile-target ()
 304   "Exclude todo keywords with a done state from refile targets"
 305   (not (member (nth 2 (org-heading-components)) org-done-keywords)))
 306
 307 (setq org-refile-target-verify-function 'bh/verify-refile-target)
 308
 309 ;; ensure that emacsclient will show just the note to be edited when invoked
 310 ;; from Mutt, and that it will shut down emacsclient once finished;
 311 ;; fallback to legacy behavior when not invoked via org-protocol.
 312 (require 'org-protocol)
 313 (add-hook 'org-capture-mode-hook 'delete-other-windows)
 314 (setq my-org-protocol-flag nil)
 315 (defadvice org-capture-finalize (after delete-frame-at-end activate)
 316   "Delete frame at remember finalization"
 317   (progn (if my-org-protocol-flag (delete-frame))
 318          (setq my-org-protocol-flag nil)))
 319 (defadvice org-capture-refile (around delete-frame-after-refile activate)
 320   "Delete frame at remember refile"
 321   (if my-org-protocol-flag
 322       (progn
 323         (setq my-org-protocol-flag nil)
 324         ad-do-it
 325         (delete-frame))
 326     ad-do-it)
 327   )
 328 (defadvice org-capture-kill (after delete-frame-at-end activate)
 329   "Delete frame at remember abort"
 330   (progn (if my-org-protocol-flag (delete-frame))
 331          (setq my-org-protocol-flag nil)))
 332 (defadvice org-protocol-capture (before set-org-protocol-flag activate)
 333   (setq my-org-protocol-flag t))
 334
 335 (defadvice org-insert-todo-heading (after dla/create-id activate)
 336   (org-id-get-create)
 337   )
 338
 339 ;; org modules
 340 (add-to-list 'org-modules 'org-habit)
 341
 342 ; this comes from http://upsilon.cc/~zack/blog/posts/2010/02/integrating_Mutt_with_Org-mode/
 343 (defun open-mail-in-mutt (message)
 344   "Open a mail message in Mutt, using an external terminal.
 345
 346 Message can be specified either by a path pointing inside a
 347 Maildir, or by Message-ID."
 348   (interactive "MPath or Message-ID: ")
 349   (shell-command
 350    (format "faf xterm -e \"%s %s\""
 351        (substitute-in-file-name "$HOME/bin/mutt_open") message)))
 352
 353 ;; add support for "mutt:ID" links
 354 (org-add-link-type "mutt" 'open-mail-in-mutt)
 355
 356 (defun my-org-mode-setup ()
 357   (load-library "reftex")
 358   (and (buffer-file-name)
 359        (file-exists-p (buffer-file-name))
 360        (progn
 361          (reftex-parse-all)
 362          (reftex-set-cite-format
 363           '((?b . "[[bib:%l][%l-bib]]")
 364             (?n . "[[notes:%l][%l-notes]]")
 365             (?c . "\\cite{%l}")
 366             (?h . "*** %t\n:PROPERTIES:\n:Custom_ID: %l\n:END:\n[[papers:%l][%l paper]]")))
 367          ))
 368   (define-key org-mode-map (kbd "C-c )") 'reftex-citation)
 369   (define-key org-mode-map (kbd "C-c [") 'reftex-citation)
 370   (define-key org-mode-map (kbd "C-c (") 'org-mode-reftex-search)
 371   (define-key org-mode-map (kbd "C-c 0") 'reftex-view-crossref)
 372   )
 373 (add-hook 'org-mode-hook 'my-org-mode-setup)
 374
 375 (defun org-mode-reftex-search ()
 376   (interactive)
 377   (org-open-link-from-string (format "[[notes:%s]]" (first (reftex-citation t)))))
 378
 379 (defun open-research-paper (bibtexkey)
 380   "Open a paper by bibtex key"
 381   (interactive "bibtex key: ")
 382   (shell-command
 383    (format "%s %s"
 384        (substitute-in-file-name "$HOME/bin/bibtex_to_paper") bibtexkey)))
 385 (org-add-link-type "papers" 'open-research-paper)
 386
 387 (add-to-list 'org-link-abbrev-alist
 388              '("notes" .
 389                "~/projects/research/paper_notes.org::#%s"))
 390
 391 ; I pretty much always want hiearchical checkboxes
 392 (setq org-hierachical-checkbox-statistics nil)
 393
 394 ;; stolen from
 395 ;; http://www-public.it-sudparis.eu/~berger_o/weblog/2012/03/23/how-to-manage-and-export-bibliographic-notesrefs-in-org-mode/
 396 (defun my-rtcite-export-handler (path desc format)
 397   (message "my-rtcite-export-handler is called : path = %s, desc = %s, format = %s" path desc format)
 398   (let* ((search (when (string-match "::#?\\(.+\\)\\'" path)
 399                    (match-string 1 path)))
 400          (path (substring path 0 (match-beginning 0))))
 401     (cond ((eq format 'latex)
 402            (if (or (not desc)
 403                    (equal 0 (search "rtcite:" desc)))
 404                (format "\\cite{%s}" search)
 405              (format "\\cite[%s]{%s}" desc search))))))
 406
 407 (org-add-link-type "rtcite"
 408                    'org-bibtex-open
 409                    'my-rtcite-export-handler)
 410
 411
 412 (setq-default org-mobile-directory "/rzlab.ucr.edu:/sites/dav.donarmstrong.com/root/org/")
 413 (setq-default org-directory "/home/don/org-mode/")
 414 (setq-default org-mobile-inbox-for-pull "/home/don/org-mode/from-mobile.org")
 415
 416 ;; org mode ical export
 417 (setq org-icalendar-timezone "America/Los_Angeles")
 418 (setq org-icalendar-use-scheduled '(todo-start event-if-todo))
 419 ;; we already add the id manually
 420 ;; (setq org-icalendar-store-UID t)
 421
 422 ;; org babel support
 423 (org-babel-do-load-languages
 424  'org-babel-load-languages
 425  '((emacs-lisp . t )
 426    (R . t)
 427    (latex . t)
 428    (ditaa . t)
 429    ))
 430 ;; org-babel-by-backend
 431 (defmacro org-babel-by-backend (&rest body)
 432    `(case (if (boundp 'backend)
 433               (org-export-backend-name backend)
 434             nil) ,@body))
 435
 436
 437
 438 ;; org latex
 439 ;; stolen from http://kieranhealy.org/esk/kjhealy.html
 440 (require 'org-latex)
 441 ;; Choose either listings or minted for exporting source code blocks.
 442 ;; Using minted (as here) requires pygments be installed. To use the
 443 ;; default listings package instead, use
 444 ;; (setq org-latex-listings t)
 445 ;; and change references to "minted" below to "listings"
 446 ; (setq org-latex-listings 'minted)
 447
 448 ;; default settings for minted code blocks
 449 (setq org-latex-minted-options
 450       '(;("frame" "single")
 451         ("bgcolor" "bg") ; bg will need to be defined in the preamble of your document. It's defined in org-preamble-pdflatex.sty and org-preamble-xelatex.sty below.
 452         ("fontsize" "\\small")
 453         ))
 454 ;; turn off the default toc behavior; deal with it properly in headers to files.
 455 (defun org-latex-no-toc (depth)
 456   (when depth
 457     (format "%% Org-mode is exporting headings to %s levels.\n"
 458             depth)))
 459 (setq org-latex-format-toc-function 'org-latex-no-toc)
 460
 461 (require 'ox-latex)
 462 (add-to-list 'org-latex-classes
 463              '("memarticle"
 464                "\\documentclass[11pt,oneside,article]{memoir}\n"
 465                ("\\section{%s}" . "\\section*{%s}")
 466                ("\\subsection{%s}" . "\\subsection*{%s}")
 467                ("\\subsubsection{%s}" . "\\subsubsection*{%s}")
 468                ("\\paragraph{%s}" . "\\paragraph*{%s}")
 469                ("\\subparagraph{%s}" . "\\subparagraph*{%s}")))
 470
 471 (add-to-list 'org-latex-classes
 472              '("beamer"
 473                "\\documentclass[ignorenonframetext]{beamer}
 474 [NO-DEFAULT-PACKAGES]
 475 [PACKAGES]
 476 [EXTRA]"
 477                ("\\section{%s}" . "\\section*{%s}")
 478                ("\\subsection{%s}" . "\\subsection*{%s}")
 479                ("\\subsubsection{%s}" . "\\subsubsection*{%s}")
 480                ("\\paragraph{%s}" . "\\paragraph*{%s}")
 481                ("\\subparagraph{%s}" . "\\subparagraph*{%s}")))
 482
 483 (add-to-list 'org-latex-classes
 484              '("membook"
 485                "\\documentclass[11pt,oneside]{memoir}\n"
 486                ("\\chapter{%s}" . "\\chapter*{%s}")
 487                ("\\section{%s}" . "\\section*{%s}")
 488                ("\\subsection{%s}" . "\\subsection*{%s}")
 489                ("\\subsubsection{%s}" . "\\subsubsection*{%s}")))
 490
 491 (add-to-list 'org-latex-classes
 492              '("letter"
 493                "\\documentclass[11pt]{letter}
 494 [NO-DEFAULT-PACKAGES]
 495 [PACKAGES]
 496 [EXTRA]"
 497        ("\\section{%s}" . "\\section*{%s}")
 498                ("\\subsection{%s}" . "\\subsection*{%s}")
 499                ("\\subsubsection{%s}" . "\\subsubsection*{%s}")
 500                ("\\paragraph{%s}" . "\\paragraph*{%s}")
 501                ("\\subparagraph{%s}" . "\\subparagraph*{%s}")))
 502
 503 ;; Originally taken from Bruno Tavernier: http://thread.gmane.org/gmane.emacs.orgmode/31150/focus=31432
 504 ;; but adapted to use latexmk 4.22 or higher.
 505 (setq org-latex-pdf-process '("latexmk -pdflatex=xelatex -bibtex -use-make -pdf %f"))
 506
 507 ;; Default packages included in /every/ tex file, latex, pdflatex or xelatex
 508 (setq org-latex-default-packages-alist
 509       '())
 510 (setq org-latex-packages-alist
 511       '(("" "graphicx" t)
 512         ("" "fontspec" t)
 513         ("" "xunicode" t)
 514         ("" "hyperref" t)
 515         ("" "url" t)
 516         ("" "rotating" t)
 517         ("" "longtable" nil)
 518         ("" "float" )))
 519
 520 (defun org-create-formula--latex-header ()
 521   "Return LaTeX header appropriate for previewing a LaTeX snippet."
 522   (let ((info (org-combine-plists (org-export--get-global-options
 523                                    (org-export-get-backend 'latex))
 524                                   (org-export--get-inbuffer-options
 525                                    (org-export-get-backend 'latex)))))
 526     (org-latex-guess-babel-language
 527      (org-latex-guess-inputenc
 528       (org-splice-latex-header
 529        org-format-latex-header
 530        org-latex-default-packages-alist
 531        nil t
 532        (plist-get info :latex-header)))
 533      info)))
 534
 535
 536 ; support ignoring headers in org mode export to latex
 537 ; from http://article.gmane.org/gmane.emacs.orgmode/67692
 538 (defadvice org-latex-headline (around my-latex-skip-headlines
 539                                       (headline contents info) activate)
 540   (if (member "ignoreheading" (org-element-property :tags headline))
 541       (setq ad-return-value contents)
 542     ad-do-it))
 543
 544 ;; keep latex logfiles
 545
 546 (setq org-latex-remove-logfiles nil)
 547
 548 ;; helper functions
 549 (defun bh/is-project-p ()
 550   "Any task with a todo keyword subtask"
 551   (save-restriction
 552     (widen)
 553     (let ((has-subtask)
 554           (subtree-end (save-excursion (org-end-of-subtree t)))
 555           (is-a-task (member (nth 2 (org-heading-components)) org-todo-keywords-1)))
 556       (save-excursion
 557         (forward-line 1)
 558         (while (and (not has-subtask)
 559                     (< (point) subtree-end)
 560                     (re-search-forward "^\*+ " subtree-end t))
 561           (when (member (org-get-todo-state) org-todo-keywords-1)
 562             (setq has-subtask t))))
 563       (and is-a-task has-subtask))))
 564
 565 (defun bh/is-project-subtree-p ()
 566   "Any task with a todo keyword that is in a project subtree.
 567 Callers of this function already widen the buffer view."
 568   (let ((task (save-excursion (org-back-to-heading 'invisible-ok)
 569                               (point))))
 570     (save-excursion
 571       (bh/find-project-task)
 572       (if (equal (point) task)
 573           nil
 574         t))))
 575
 576 (defun bh/is-task-p ()
 577   "Any task with a todo keyword and no subtask"
 578   (save-restriction
 579     (widen)
 580     (let ((has-subtask)
 581           (subtree-end (save-excursion (org-end-of-subtree t)))
 582           (is-a-task (member (nth 2 (org-heading-components)) org-todo-keywords-1)))
 583       (save-excursion
 584         (forward-line 1)
 585         (while (and (not has-subtask)
 586                     (< (point) subtree-end)
 587                     (re-search-forward "^\*+ " subtree-end t))
 588           (when (member (org-get-todo-state) org-todo-keywords-1)
 589             (setq has-subtask t))))
 590       (and is-a-task (not has-subtask)))))
 591
 592 (defun bh/is-subproject-p ()
 593   "Any task which is a subtask of another project"
 594   (let ((is-subproject)
 595         (is-a-task (member (nth 2 (org-heading-components)) org-todo-keywords-1)))
 596     (save-excursion
 597       (while (and (not is-subproject) (org-up-heading-safe))
 598         (when (member (nth 2 (org-heading-components)) org-todo-keywords-1)
 599           (setq is-subproject t))))
 600     (and is-a-task is-subproject)))
 601
 602 (defun bh/list-sublevels-for-projects-indented ()
 603   "Set org-tags-match-list-sublevels so when restricted to a subtree we list all subtasks.
 604   This is normally used by skipping functions where this variable is already local to the agenda."
 605   (if (marker-buffer org-agenda-restrict-begin)
 606       (setq org-tags-match-list-sublevels 'indented)
 607     (setq org-tags-match-list-sublevels nil))
 608   nil)
 609
 610 (defun bh/list-sublevels-for-projects ()
 611   "Set org-tags-match-list-sublevels so when restricted to a subtree we list all subtasks.
 612   This is normally used by skipping functions where this variable is already local to the agenda."
 613   (if (marker-buffer org-agenda-restrict-begin)
 614       (setq org-tags-match-list-sublevels t)
 615     (setq org-tags-match-list-sublevels nil))
 616   nil)
 617
 618 (defvar bh/hide-scheduled-and-waiting-next-tasks t)
 619
 620 (defun bh/toggle-next-task-display ()
 621   (interactive)
 622   (setq bh/hide-scheduled-and-waiting-next-tasks (not bh/hide-scheduled-and-waiting-next-tasks))
 623   (when  (equal major-mode 'org-agenda-mode)
 624     (org-agenda-redo))
 625   (message "%s WAITING and SCHEDULED NEXT Tasks" (if bh/hide-scheduled-and-waiting-next-tasks "Hide" "Show")))
 626
 627 (defun bh/skip-stuck-projects ()
 628   "Skip trees that are not stuck projects"
 629   (save-restriction
 630     (widen)
 631     (let ((next-headline (save-excursion (or (outline-next-heading) (point-max)))))
 632       (if (bh/is-project-p)
 633           (let* ((subtree-end (save-excursion (org-end-of-subtree t)))
 634                  (has-next ))
 635             (save-excursion
 636               (forward-line 1)
 637               (while (and (not has-next) (< (point) subtree-end) (re-search-forward "^\\*+ NEXT " subtree-end t))
 638                 (unless (member "WAITING" (org-get-tags-at))
 639                   (setq has-next t))))
 640             (if has-next
 641                 nil
 642               next-headline)) ; a stuck project, has subtasks but no next task
 643         nil))))
 644
 645 (defun bh/skip-non-stuck-projects ()
 646   "Skip trees that are not stuck projects"
 647   ;; (bh/list-sublevels-for-projects-indented)
 648   (save-restriction
 649     (widen)
 650     (let ((next-headline (save-excursion (or (outline-next-heading) (point-max)))))
 651       (if (bh/is-project-p)
 652           (let* ((subtree-end (save-excursion (org-end-of-subtree t)))
 653                  (has-next ))
 654             (save-excursion
 655               (forward-line 1)
 656               (while (and (not has-next) (< (point) subtree-end) (re-search-forward "^\\*+ NEXT " subtree-end t))
 657                 (unless (member "WAITING" (org-get-tags-at))
 658                   (setq has-next t))))
 659             (if has-next
 660                 next-headline
 661               nil)) ; a stuck project, has subtasks but no next task
 662         next-headline))))
 663
 664 (defun bh/skip-non-projects ()
 665   "Skip trees that are not projects"
 666   ;; (bh/list-sublevels-for-projects-indented)
 667   (if (save-excursion (bh/skip-non-stuck-projects))
 668       (save-restriction
 669         (widen)
 670         (let ((subtree-end (save-excursion (org-end-of-subtree t))))
 671           (cond
 672            ((bh/is-project-p)
 673             nil)
 674            ((and (bh/is-project-subtree-p) (not (bh/is-task-p)))
 675             nil)
 676            (t
 677             subtree-end))))
 678     (save-excursion (org-end-of-subtree t))))
 679
 680 (defun bh/skip-project-trees-and-habits ()
 681   "Skip trees that are projects"
 682   (save-restriction
 683     (widen)
 684     (let ((subtree-end (save-excursion (org-end-of-subtree t))))
 685       (cond
 686        ((bh/is-project-p)
 687         subtree-end)
 688        ((org-is-habit-p)
 689         subtree-end)
 690        (t
 691         nil)))))
 692
 693 (defun bh/skip-projects-and-habits-and-single-tasks ()
 694   "Skip trees that are projects, tasks that are habits, single non-project tasks"
 695   (save-restriction
 696     (widen)
 697     (let ((next-headline (save-excursion (or (outline-next-heading) (point-max)))))
 698       (cond
 699        ((org-is-habit-p)
 700         next-headline)
 701        ((and bh/hide-scheduled-and-waiting-next-tasks
 702              (member "WAITING" (org-get-tags-at)))
 703         next-headline)
 704        ((bh/is-project-p)
 705         next-headline)
 706        ((and (bh/is-task-p) (not (bh/is-project-subtree-p)))
 707         next-headline)
 708        (t
 709         nil)))))
 710
 711 (defun bh/skip-project-tasks-maybe ()
 712   "Show tasks related to the current restriction.
 713 When restricted to a project, skip project and sub project tasks, habits, NEXT tasks, and loose tasks.
 714 When not restricted, skip project and sub-project tasks, habits, and project related tasks."
 715   (save-restriction
 716     (widen)
 717     (let* ((subtree-end (save-excursion (org-end-of-subtree t)))
 718            (next-headline (save-excursion (or (outline-next-heading) (point-max))))
 719            (limit-to-project (marker-buffer org-agenda-restrict-begin)))
 720       (cond
 721        ((bh/is-project-p)
 722         next-headline)
 723        ((org-is-habit-p)
 724         subtree-end)
 725        ((and (not limit-to-project)
 726              (bh/is-project-subtree-p))
 727         subtree-end)
 728        ((and limit-to-project
 729              (bh/is-project-subtree-p)
 730              (member (org-get-todo-state) (list "NEXT")))
 731         subtree-end)
 732        (t
 733         nil)))))
 734
 735 (defun bh/skip-project-tasks ()
 736   "Show non-project tasks.
 737 Skip project and sub-project tasks, habits, and project related tasks."
 738   (save-restriction
 739     (widen)
 740     (let* ((subtree-end (save-excursion (org-end-of-subtree t))))
 741       (cond
 742        ((bh/is-project-p)
 743         subtree-end)
 744        ((org-is-habit-p)
 745         subtree-end)
 746        ((bh/is-project-subtree-p)
 747         subtree-end)
 748        (t
 749         nil)))))
 750
 751 (defun bh/skip-non-project-tasks ()
 752   "Show project tasks.
 753 Skip project and sub-project tasks, habits, and loose non-project tasks."
 754   (save-restriction
 755     (widen)
 756     (let* ((subtree-end (save-excursion (org-end-of-subtree t)))
 757            (next-headline (save-excursion (or (outline-next-heading) (point-max)))))
 758       (cond
 759        ((bh/is-project-p)
 760         next-headline)
 761        ((org-is-habit-p)
 762         subtree-end)
 763        ((and (bh/is-project-subtree-p)
 764              (member (org-get-todo-state) (list "NEXT")))
 765         subtree-end)
 766        ((not (bh/is-project-subtree-p))
 767         subtree-end)
 768        (t
 769         nil)))))
 770
 771 (defun bh/skip-projects-and-habits ()
 772   "Skip trees that are projects and tasks that are habits"
 773   (save-restriction
 774     (widen)
 775     (let ((subtree-end (save-excursion (org-end-of-subtree t))))
 776       (cond
 777        ((bh/is-project-p)
 778         subtree-end)
 779        ((org-is-habit-p)
 780         subtree-end)
 781        (t
 782         nil)))))
 783
 784 (defun bh/skip-non-subprojects ()
 785   "Skip trees that are not projects"
 786   (let ((next-headline (save-excursion (outline-next-heading))))
 787     (if (bh/is-subproject-p)
 788         nil
 789       next-headline)))
 790 ;
 791 ;; Resume clocking task when emacs is restarted
 792 (org-clock-persistence-insinuate)
 793 ;;
 794 ;; Show lot of clocking history so it's easy to pick items off the C-F11 list
 795 (setq org-clock-history-length 23)
 796 ;; Resume clocking task on clock-in if the clock is open
 797 (setq org-clock-in-resume t)
 798 ;; Change tasks to NEXT when clocking in
 799 (setq org-clock-in-switch-to-state 'bh/clock-in-to-next)
 800 ;; Separate drawers for clocking and logs
 801 (setq org-drawers (quote ("PROPERTIES" "LOGBOOK")))
 802 ;; Save clock data and state changes and notes in the LOGBOOK drawer
 803 (setq org-clock-into-drawer t)
 804 (setq org-log-into-drawer t)
 805 ;; Sometimes I change tasks I'm clocking quickly - this removes clocked tasks with 0:00 duration
 806 (setq org-clock-out-remove-zero-time-clocks t)
 807 ;; Clock out when moving task to a done state
 808 (setq org-clock-out-when-done t)
 809 ;; Save the running clock and all clock history when exiting Emacs, load it on startup
 810 (setq org-clock-persist t)
 811 ;; Do not prompt to resume an active clock
 812 (setq org-clock-persist-query-resume nil)
 813 ;; Enable auto clock resolution for finding open clocks
 814 (setq org-clock-auto-clock-resolution (quote when-no-clock-is-running))
 815 ;; Include current clocking task in clock reports
 816 (setq org-clock-report-include-clocking-task t)
 817
 818
 819 (defvar bh/keep-clock-running nil)
 820
 821 (defun bh/clock-in-to-next (kw)
 822   "Switch a task from TODO to NEXT when clocking in.
 823 Skips capture tasks, projects, and subprojects.
 824 Switch projects and subprojects from NEXT back to TODO"
 825   (when (not (and (boundp 'org-capture-mode) org-capture-mode))
 826     (cond
 827      ((and (member (org-get-todo-state) (list "TODO"))
 828            (bh/is-task-p))
 829       "NEXT")
 830      ((and (member (org-get-todo-state) (list "NEXT"))
 831            (bh/is-project-p))
 832       "TODO"))))
 833
 834 (defun bh/find-project-task ()
 835   "Move point to the parent (project) task if any"
 836   (save-restriction
 837     (widen)
 838     (let ((parent-task (save-excursion (org-back-to-heading 'invisible-ok) (point))))
 839       (while (org-up-heading-safe)
 840         (when (member (nth 2 (org-heading-components)) org-todo-keywords-1)
 841           (setq parent-task (point))))
 842       (goto-char parent-task)
 843       parent-task)))
 844
 845 (defun bh/punch-in (arg)
 846   "Start continuous clocking and set the default task to the
 847 selected task.  If no task is selected set the Organization task
 848 as the default task."
 849   (interactive "p")
 850   (setq bh/keep-clock-running t)
 851   (if (equal major-mode 'org-agenda-mode)
 852       ;;
 853       ;; We're in the agenda
 854       ;;
 855       (let* ((marker (org-get-at-bol 'org-hd-marker))
 856              (tags (org-with-point-at marker (org-get-tags-at))))
 857         (if (and (eq arg 4) tags)
 858             (org-agenda-clock-in '(16))
 859           (bh/clock-in-organization-task-as-default)))
 860     ;;
 861     ;; We are not in the agenda
 862     ;;
 863     (save-restriction
 864       (widen)
 865       ; Find the tags on the current task
 866       (if (and (equal major-mode 'org-mode) (not (org-before-first-heading-p)) (eq arg 4))
 867           (org-clock-in '(16))
 868         (bh/clock-in-organization-task-as-default)))))
 869
 870 (defun bh/punch-out ()
 871   (interactive)
 872   (setq bh/keep-clock-running nil)
 873   (when (org-clock-is-active)
 874     (org-clock-out))
 875   (org-agenda-remove-restriction-lock))
 876
 877 (defun bh/clock-in-default-task ()
 878   (save-excursion
 879     (org-with-point-at org-clock-default-task
 880       (org-clock-in))))
 881
 882 (defun bh/clock-in-parent-task ()
 883   "Move point to the parent (project) task if any and clock in"
 884   (let ((parent-task))
 885     (save-excursion
 886       (save-restriction
 887         (widen)
 888         (while (and (not parent-task) (org-up-heading-safe))
 889           (when (member (nth 2 (org-heading-components)) org-todo-keywords-1)
 890             (setq parent-task (point))))
 891         (if parent-task
 892             (org-with-point-at parent-task
 893               (org-clock-in))
 894           (when bh/keep-clock-running
 895             (bh/clock-in-default-task)))))))
 896
 897 (defvar bh/organization-task-id "e22cb8bf-07c7-408b-8f60-ff3aadac95e4")
 898
 899 (defun bh/clock-in-organization-task-as-default ()
 900   (interactive)
 901   (org-with-point-at (org-id-find bh/organization-task-id 'marker)
 902     (org-clock-in '(16))))
 903
 904 (defun bh/clock-out-maybe ()
 905   (when (and bh/keep-clock-running
 906              (not org-clock-clocking-in)
 907              (marker-buffer org-clock-default-task)
 908              (not org-clock-resolving-clocks-due-to-idleness))
 909     (bh/clock-in-parent-task)))
 910
 911 (add-hook 'org-clock-out-hook 'bh/clock-out-maybe 'append)
 912
 913 (require 'org-id)
 914 (defun bh/clock-in-task-by-id (id)
 915   "Clock in a task by id"
 916   (org-with-point-at (org-id-find id 'marker)
 917     (org-clock-in nil)))
 918
 919 (defun bh/clock-in-last-task (arg)
 920   "Clock in the interrupted task if there is one
 921 Skip the default task and get the next one.
 922 A prefix arg forces clock in of the default task."
 923   (interactive "p")
 924   (let ((clock-in-to-task
 925          (cond
 926           ((eq arg 4) org-clock-default-task)
 927           ((and (org-clock-is-active)
 928                 (equal org-clock-default-task (cadr org-clock-history)))
 929            (caddr org-clock-history))
 930           ((org-clock-is-active) (cadr org-clock-history))
 931           ((equal org-clock-default-task (car org-clock-history)) (cadr org-clock-history))
 932           (t (car org-clock-history)))))
 933     (widen)
 934     (org-with-point-at clock-in-to-task
 935       (org-clock-in nil))))
 936