emacs_el/configuration/org-mode-configuration.el

   1 (require 'org-id)
   2 (require 'reftex)
   3 (require 'gnus)
   4
   5 (require 'org)
   6 (require 'org-agenda)
   7 (require 'org-habit)
   8 ;; The following lines are always needed. Choose your own keys.
   9 (add-to-list 'auto-mode-alist '("\\.\\(org\\|org_archive\\|txt\\)$" . org-mode))
  10 (eval-when-compile
  11   (require 'cl))
  12 (global-set-key "\C-cl" 'org-store-link)
  13 (global-set-key "\C-ca" 'org-agenda)
  14 (global-set-key "\C-cb" 'org-iswitchb)
  15 (setq-default org-log-done 'time)
  16 (setq-default org-agenda-ndays 5)
  17
  18 ;; agenda configuration
  19 ;; Do not dim blocked tasks
  20 (setq org-agenda-dim-blocked-tasks nil)
  21
  22 ;; Compact the block agenda view
  23 (setq org-agenda-compact-blocks t)
  24
  25 ;; Custom agenda command definitions
  26 (setq org-agenda-custom-commands
  27       (quote (("N" "Notes" tags "NOTE"
  28                ((org-agenda-overriding-header "Notes")
  29                 (org-tags-match-list-sublevels t)))
  30               ("h" "Habits" tags-todo "STYLE=\"habit\""
  31                ((org-agenda-overriding-header "Habits")
  32                 (org-agenda-sorting-strategy
  33                  '(todo-state-down effort-up category-keep))))
  34               (" " "Agenda"
  35                ((agenda "" nil)
  36                 (tags "REFILE"
  37                       ((org-agenda-overriding-header "Tasks to Refile")
  38                        (org-tags-match-list-sublevels nil)))
  39                 (tags-todo "-CANCELLED/!"
  40                            ((org-agenda-overriding-header "Stuck Projects")
  41                             (org-agenda-skip-function 'bh/skip-non-stuck-projects)
  42                             (org-agenda-sorting-strategy
  43                              '(category-keep))))
  44                 (tags-todo "-HOLD-CANCELLED/!"
  45                            ((org-agenda-overriding-header "Projects")
  46                             (org-agenda-skip-function 'bh/skip-non-projects)
  47                             (org-tags-match-list-sublevels 'indented)
  48                             (org-agenda-sorting-strategy
  49                              '(category-keep))))
  50                 (tags-todo "-CANCELLED/!NEXT"
  51                            ((org-agenda-overriding-header (concat "Project Next Tasks"
  52                                                                   (if bh/hide-scheduled-and-waiting-next-tasks
  53                                                                       ""
  54                                                                     " (including WAITING and SCHEDULED tasks)")))
  55                             (org-agenda-skip-function 'bh/skip-projects-and-habits-and-single-tasks)
  56                             (org-tags-match-list-sublevels t)
  57                             (org-agenda-todo-ignore-scheduled bh/hide-scheduled-and-waiting-next-tasks)
  58                             (org-agenda-todo-ignore-deadlines bh/hide-scheduled-and-waiting-next-tasks)
  59                             (org-agenda-todo-ignore-with-date bh/hide-scheduled-and-waiting-next-tasks)
  60                             (org-agenda-sorting-strategy
  61                              '(todo-state-down effort-up category-keep))))
  62                 (tags-todo "-REFILE-CANCELLED-WAITING-HOLD/!"
  63                            ((org-agenda-overriding-header (concat "Project Subtasks"
  64                                                                   (if bh/hide-scheduled-and-waiting-next-tasks
  65                                                                       ""
  66                                                                     " (including WAITING and SCHEDULED tasks)")))
  67                             (org-agenda-skip-function 'bh/skip-non-project-tasks)
  68                             (org-agenda-todo-ignore-scheduled bh/hide-scheduled-and-waiting-next-tasks)
  69                             (org-agenda-todo-ignore-deadlines bh/hide-scheduled-and-waiting-next-tasks)
  70                             (org-agenda-todo-ignore-with-date bh/hide-scheduled-and-waiting-next-tasks)
  71                             (org-agenda-sorting-strategy
  72                              '(category-keep))))
  73                 (tags-todo "-REFILE-CANCELLED-WAITING-HOLD/!"
  74                            ((org-agenda-overriding-header (concat "Standalone Tasks"
  75                                                                   (if bh/hide-scheduled-and-waiting-next-tasks
  76                                                                       ""
  77                                                                     " (including WAITING and SCHEDULED tasks)")))
  78                             (org-agenda-skip-function 'bh/skip-project-tasks)
  79                             (org-agenda-todo-ignore-scheduled bh/hide-scheduled-and-waiting-next-tasks)
  80                             (org-agenda-todo-ignore-deadlines bh/hide-scheduled-and-waiting-next-tasks)
  81                             (org-agenda-todo-ignore-with-date bh/hide-scheduled-and-waiting-next-tasks)
  82                             (org-agenda-sorting-strategy
  83                              '(category-keep))))
  84                 (tags-todo "-CANCELLED+WAITING|HOLD/!"
  85                            ((org-agenda-overriding-header "Waiting and Postponed Tasks")
  86                             (org-agenda-skip-function 'bh/skip-stuck-projects)
  87                             (org-tags-match-list-sublevels nil)
  88                             (org-agenda-todo-ignore-scheduled t)
  89                             (org-agenda-todo-ignore-deadlines t)))
  90                 (tags "-REFILE/"
  91                       ((org-agenda-overriding-header "Tasks to Archive")
  92                        (org-agenda-skip-function 'bh/skip-non-archivable-tasks)
  93                        (org-tags-match-list-sublevels nil))))
  94                nil))))
  95
  96 ; org mode agenda files
  97 (setq org-agenda-files
  98       (quote ("~/projects/org-notes/debbugs.org"
  99               "~/projects/org-notes/notes.org"
 100               "~/projects/org-notes/refile.org"
 101               "~/projects/org-notes/diary.org"
 102               "~/projects/org-notes/ool.org"
 103               "~/projects/org-notes/sndservers.org"
 104               "~/projects/org-notes/chaim.org"
 105               "~/projects/org-notes/wildman.org"
 106               "~/projects/org-notes/uddin.org"
 107           "~/projects/org-notes/reviews.org"
 108           "~/projects/org-notes/hpcbio.org"
 109               "~/projects/org-notes/fh.org")))
 110
 111 (set-register ?n (cons 'file "~/projects/org-notes/notes.org"))
 112 (set-register ?r (cons 'file "~/projects/org-notes/refile.org"))
 113 (set-register ?o (cons 'file "~/projects/org-notes/ool.org"))
 114 (set-register ?s (cons 'file "~/projects/org-notes/sndservers.org"))
 115 (set-register ?c (cons 'file "~/projects/org-notes/chaim.org"))
 116 (set-register ?w (cons 'file "~/projects/org-notes/wildman.org"))
 117 (set-register ?u (cons 'file "~/projects/org-notes/uddin.org"))
 118 (set-register ?R (cons 'file "~/projects/reviews/reviews.org"))
 119 (set-register ?d (cons 'file "~/projects/org-notes/diary.org"))
 120
 121 (setq org-global-properties '(("Effort_ALL 0 0:10 0:30 1:00 2:00 3:00 4:00 5:00 6:00 7:00")))
 122 (setq org-columns-default-format "%40ITEM(Task) %6Effort{:} %CLOCKSUM %PRIORITY %TODO %13SCHEDULED %13DEADLINE %TAGS")
 123
 124 (setq org-default-notes-file "~/projects/org-notes/notes.org")
 125 (setq org-id-link-to-org-use-id t)
 126 (setq org-capture-templates  ;; mail-specific note template, identified by "m"
 127       '(("m" "Mail" entry (file+headline "~/projects/org-notes/refile.org" "Mail")
 128          "* %?\n\n  Source: %u, %c\n  %i")
 129         ("t" "todo" entry (file "~/projects/org-notes/refile.org")
 130          "* TODO %?\n  :PROPERTIES:\n  :END:\n  :LOGBOOK:\n  :END:\n%U\n%a\n" :clock-in t :clock-resume t)
 131         ("r" "respond" entry (file "~/projects/org-notes/refile.org")
 132          "* NEXT Respond to %:from on %:subject\nSCHEDULED: %t\n%U\n%a\n" :clock-in t :clock-resume t :immediate-finish t)
 133         ("n" "note" entry (file "~/projects/org-notes/refile.org")
 134          "* %? :NOTE:\n%U\n%a\n" :clock-in t :clock-resume t)
 135         ("s" "schedule" entry (file "~/projects/org-notes/refile.org")
 136          "* %? :cal:\n%^{scheduled:}t\n%U\n%a\n" :clock-in t :clock-resume t)
 137         ("j" "Journal" entry (file+datetree "~/projects/org-notes/diary.org")
 138          "* %?\n%U\n" :clock-in t :clock-resume t)
 139         ("w" "org-protocol" entry (file "~/projects/org-notes/refile.org")
 140          "* TODO Review %c\n%U\n" :immediate-finish t)
 141         ("M" "Meeting" entry (file "~/projects/org-notes/refile.org")
 142          "* MEETING with %? :MEETING:\n%U" :clock-in t :clock-resume t)
 143         ("S" "Seminar" entry (file "~/projects/org-notes/refile.org")
 144          "* SEMINAR notes %? :SEMINAR:\n%U" :clock-in t :clock-resume t)
 145         ("P" "Paper to read" entry (file+headline "~/projects/research/papers_to_read.org" "Refile")
 146          "* TODO Get/Read %? \n%U" :clock-in t :clock-resume t)
 147         ("p" "Phone call" entry (file "~/projects/org-notes/refile.org")
 148          "* PHONE %? :PHONE:\n%U" :clock-in t :clock-resume t)
 149         ("J" "job" entry (file "~/projects/org-notes/refile.org")
 150          "* TODO Apply for %a%? :job:\nSCHEDULED: %(format-time-string \"<%Y-%m-%d 17:00-17:30>\")\n%U\n%a\n" :clock-in t :clock-resume t)
 151         ("h" "Habit" entry (file "~/projects/org-notes/refile.org")
 152          "* NEXT %?\n%U\n%a\nSCHEDULED: %(format-time-string \"<%Y-%m-%d .+1d/3d>\")\n:PROPERTIES:\n:STYLE: habit\n:REPEAT_TO_STATE: NEXT\n:END:\n%a\n")
 153         )
 154       )
 155
 156 ;; Remove empty LOGBOOK drawers on clock out
 157 (defun bh/remove-empty-drawer-on-clock-out ()
 158   (interactive)
 159   (save-excursion
 160     (beginning-of-line 0)
 161     (org-remove-empty-drawer-at (point))))
 162
 163 (defun my/org-add-id ()
 164   (interactive)
 165   (save-excursion
 166     (if (org-current-level)
 167         ()
 168       (forward-char 1)
 169       )
 170     (org-id-get-create)
 171     )
 172 )
 173
 174 ; org mode configuration from http://doc.norang.ca/org-mode.html
 175 ;; Custom Key Bindings
 176 (global-set-key (kbd "<f12>") 'org-agenda)
 177 (global-set-key (kbd "<f5>") 'bh/org-todo)
 178 (global-set-key (kbd "<S-f5>") 'bh/widen)
 179 (global-set-key (kbd "<f7>") 'bh/set-truncate-lines)
 180 (global-set-key (kbd "<f8>") 'org-cycle-agenda-files)
 181 (global-set-key (kbd "<f9> <f9>") 'bh/show-org-agenda)
 182 (global-set-key (kbd "<f9> b") 'bbdb)
 183 (global-set-key (kbd "<f9> c") 'calendar)
 184 (global-set-key (kbd "<f9> f") 'boxquote-insert-file)
 185 (global-set-key (kbd "<f9> h") 'bh/hide-other)
 186 (global-set-key (kbd "<f9> n") 'bh/toggle-next-task-display)
 187 (global-set-key (kbd "<f9> w") 'widen)
 188
 189 ; change the outline mode prefix from C-c @ to C-c C-2
 190 (setq outline-minor-mode-prefix "C-c C-2")
 191 ;(add-hook 'outline-minor-mode-hook
 192 ;          (lambda () (local-set-key (kbd "C-c C-2")
 193 ;                                    outline-mode-prefix-map)))
 194
 195 (global-set-key (kbd "<f9> I") 'bh/punch-in)
 196 (global-set-key (kbd "<f9> O") 'bh/punch-out)
 197
 198 (global-set-key (kbd "<f9> o") 'bh/make-org-scratch)
 199
 200 (global-set-key (kbd "<f9> r") 'boxquote-region)
 201 (global-set-key (kbd "<f9> s") 'bh/switch-to-scratch)
 202
 203 (global-set-key (kbd "<f9> t") 'bh/insert-inactive-timestamp)
 204 (global-set-key (kbd "<f9> T") 'bh/toggle-insert-inactive-timestamp)
 205
 206 (global-set-key (kbd "<f9> v") 'visible-mode)
 207 (global-set-key (kbd "<f9> l") 'org-toggle-link-display)
 208 (global-set-key (kbd "<f9> SPC") 'bh/clock-in-last-task)
 209 (global-set-key (kbd "C-<f9>") 'previous-buffer)
 210 (global-set-key (kbd "M-<f9>") 'org-toggle-inline-images)
 211 (global-set-key (kbd "C-x n r") 'narrow-to-region)
 212 (global-set-key (kbd "C-<f10>") 'next-buffer)
 213 (global-set-key (kbd "<f11>") 'org-clock-goto)
 214 (global-set-key (kbd "C-<f11>") 'org-clock-in)
 215 (global-set-key (kbd "C-s-<f12>") 'bh/save-then-publish)
 216 (global-set-key (kbd "C-c c") 'org-capture)
 217
 218 (defun bh/hide-other ()
 219   (interactive)
 220   (save-excursion
 221     (org-back-to-heading 'invisible-ok)
 222     (hide-other)
 223     (org-cycle)
 224     (org-cycle)
 225     (org-cycle)))
 226
 227 (defun bh/set-truncate-lines ()
 228   "Toggle value of truncate-lines and refresh window display."
 229   (interactive)
 230   (setq truncate-lines (not truncate-lines))
 231   ;; now refresh window display (an idiom from simple.el):
 232   (save-excursion
 233     (set-window-start (selected-window)
 234                       (window-start (selected-window)))))
 235
 236 (defun bh/make-org-scratch ()
 237   (interactive)
 238   (find-file "/tmp/publish/scratch.org")
 239   (gnus-make-directory "/tmp/publish"))
 240
 241 (defun bh/switch-to-scratch ()
 242   (interactive)
 243   (switch-to-buffer "*scratch*"))
 244
 245 (setq org-use-fast-todo-selection t)
 246 (setq org-treat-S-cursor-todo-selection-as-state-change nil)
 247
 248 (setq org-todo-keywords
 249       (quote ((sequence "TODO(t)" "NEXT(n)" "|" "DONE(d)")
 250               (sequence "WAITING(w@/!)" "HOLD(h@/!)" "|" "CANCELLED(c@/!)" "PHONE" "MEETING"))))
 251
 252 (setq org-todo-keyword-faces
 253       (quote (("TODO" :foreground "red" :weight bold)
 254               ("NEXT" :foreground "blue" :weight bold)
 255               ("DONE" :foreground "forest green" :weight bold)
 256               ("WAITING" :foreground "orange" :weight bold)
 257               ("HOLD" :foreground "magenta" :weight bold)
 258               ("CANCELLED" :foreground "forest green" :weight bold)
 259               ("MEETING" :foreground "forest green" :weight bold)
 260               ("PHONE" :foreground "forest green" :weight bold))))
 261
 262 (setq org-todo-state-tags-triggers
 263       (quote (("CANCELLED" ("CANCELLED" . t))
 264               ("WAITING" ("WAITING" . t))
 265               ("HOLD" ("WAITING") ("HOLD" . t))
 266               (done ("WAITING") ("HOLD"))
 267               ("TODO" ("WAITING") ("CANCELLED") ("HOLD"))
 268               ("NEXT" ("WAITING") ("CANCELLED") ("HOLD"))
 269               ("DONE" ("WAITING") ("CANCELLED") ("HOLD")))))
 270
 271
 272
 273 ; (add-hook 'org-clock-out-hook 'bh/remove-empty-drawer-on-clock-out 'append)
 274 ; add ids on creation of nodes
 275 (add-hook 'org-capture-prepare-finalize-hook 'my/org-add-id)
 276 ; create function to create headlines in file. This comes from
 277 ; http://stackoverflow.com/questions/13340616/assign-ids-to-every-entry-in-org-mode
 278 (defun my/org-add-ids-to-headlines-in-file ()
 279   "Add ID properties to all headlines in the current file which
 280 do not already have one."
 281   (interactive)
 282   (org-map-entries 'org-id-get-create))
 283 ; if we wanted to do this to every buffer, do the following:
 284 ; (add-hook 'org-mode-hook
 285 ;           (lambda ()
 286 ;             (add-hook 'before-save-hook 'my/org-add-ids-to-headlines-in-file nil 'local)))
 287
 288
 289 ; resolve clocks after 10 minutes of idle; use xprintidle
 290 ; (setq org-clock-idle-time 10)
 291 ; (setq org-clock-x11idle-program-name "xprintidle")
 292
 293 ; this is from http://doc.norang.ca/org-mode.html#Capture
 294 ; use C-M-r for org mode capture
 295 (global-set-key (kbd "C-M-r") 'org-capture)
 296
 297 ; Targets include this file and any file contributing to the agenda - up to 9 levels deep
 298 (setq org-refile-targets (quote ((nil :maxlevel . 9)
 299                                  (org-agenda-files :maxlevel . 9))))
 300
 301 ; Use full outline paths for refile targets - we file directly with IDO
 302 (setq org-refile-use-outline-path t)
 303
 304 ; Targets complete directly with IDO
 305 (setq org-outline-path-complete-in-steps nil)
 306
 307 ; Allow refile to create parent tasks with confirmation
 308 (setq org-refile-allow-creating-parent-nodes (quote confirm))
 309
 310 ; ; Use IDO for both buffer and file completion and ido-everywhere to t
 311 ; (setq org-completion-use-ido t)
 312 ; (setq ido-everywhere t)
 313 ; (setq ido-max-directory-size 100000)
 314 ; (ido-mode (quote both))
 315 ; ; Use the current window when visiting files and buffers with ido
 316 ; (setq ido-default-file-method 'selected-window)
 317 ; (setq ido-default-buffer-method 'selected-window)
 318 ; ; Use the current window for indirect buffer display
 319 ; (setq org-indirect-buffer-display 'current-window)
 320
 321
 322 ;;;; Refile settings
 323 ; Exclude DONE state tasks from refile targets
 324 (defun bh/verify-refile-target ()
 325   "Exclude todo keywords with a done state from refile targets"
 326   (not (member (nth 2 (org-heading-components)) org-done-keywords)))
 327
 328 (setq org-refile-target-verify-function 'bh/verify-refile-target)
 329
 330 ;; ensure that emacsclient will show just the note to be edited when invoked
 331 ;; from Mutt, and that it will shut down emacsclient once finished;
 332 ;; fallback to legacy behavior when not invoked via org-protocol.
 333 (require 'org-protocol)
 334 ; (add-hook 'org-capture-mode-hook 'delete-other-windows)
 335 (setq my-org-protocol-flag nil)
 336 (defadvice org-capture-finalize (after delete-frame-at-end activate)
 337   "Delete frame at remember finalization"
 338   (progn (if my-org-protocol-flag (delete-frame))
 339          (setq my-org-protocol-flag nil)))
 340 (defadvice org-capture-refile (around delete-frame-after-refile activate)
 341   "Delete frame at remember refile"
 342   (if my-org-protocol-flag
 343       (progn
 344         (setq my-org-protocol-flag nil)
 345         ad-do-it
 346         (delete-frame))
 347     ad-do-it)
 348   )
 349 (defadvice org-capture-kill (after delete-frame-at-end activate)
 350   "Delete frame at remember abort"
 351   (progn (if my-org-protocol-flag (delete-frame))
 352          (setq my-org-protocol-flag nil)))
 353 (defadvice org-protocol-capture (before set-org-protocol-flag activate)
 354   (setq my-org-protocol-flag t))
 355
 356 (defadvice org-insert-todo-heading (after dla/create-id activate)
 357   (org-id-get-create)
 358   )
 359
 360 ;; org modules
 361 (add-to-list 'org-modules 'org-habit)
 362
 363 ; this comes from http://upsilon.cc/~zack/blog/posts/2010/02/integrating_Mutt_with_Org-mode/
 364 (defun open-mail-in-mutt (message)
 365   "Open a mail message in Mutt, using an external terminal.
 366
 367 Message can be specified either by a path pointing inside a
 368 Maildir, or by Message-ID."
 369   (interactive "MPath or Message-ID: ")
 370   (shell-command
 371    (format "faf xterm -e \"%s %s\""
 372        (substitute-in-file-name "$HOME/bin/mutt_open") message)))
 373
 374 ;; add support for "mutt:ID" links
 375 (org-add-link-type "mutt" 'open-mail-in-mutt)
 376
 377 (defun my-org-mode-setup ()
 378   (load-library "reftex")
 379   (and (buffer-file-name)
 380        (file-exists-p (buffer-file-name))
 381        (progn
 382          (reftex-parse-all)
 383          (reftex-set-cite-format
 384           '((?b . "[[bib:%l][%l-bib]]")
 385             (?n . "[[notes:%l][%l-notes]]")
 386             (?c . "\\cite{%l}")
 387             (?h . "*** %t\n:PROPERTIES:\n:Custom_ID: %l\n:END:\n[[papers:%l][%l xoj]] [[papers-pdf:%l][pdf]]")))
 388          ))
 389   (define-key org-mode-map (kbd "C-c )") 'reftex-citation)
 390   (define-key org-mode-map (kbd "C-c [") 'reftex-citation)
 391   (define-key org-mode-map (kbd "C-c (") 'org-mode-reftex-search)
 392   (define-key org-mode-map (kbd "C-c 0") 'reftex-view-crossref)
 393   )
 394 (add-hook 'org-mode-hook 'my-org-mode-setup)
 395
 396 (defun org-mode-reftex-search ()
 397   (interactive)
 398   (org-open-link-from-string (format "[[notes:%s]]" (first (reftex-citation t)))))
 399
 400 (defun open-research-paper (bibtexkey)
 401   "Open a paper by bibtex key"
 402   (interactive "bibtex key: ")
 403   (shell-command
 404    (format "%s %s"
 405        (substitute-in-file-name "$HOME/bin/bibtex_to_paper") bibtexkey)))
 406 (org-add-link-type "papers" 'open-research-paper)
 407 (defun open-research-paper-pdf (bibtexkey)
 408   "Open a paper pdf by bibtex key"
 409   (interactive "bibtex key: ")
 410   (shell-command
 411    (format "%s -p evince %s"
 412        (substitute-in-file-name "$HOME/bin/bibtex_to_paper") bibtexkey)))
 413 (org-add-link-type "papers-pdf" 'open-research-paper-pdf)
 414
 415 (add-to-list 'org-link-abbrev-alist
 416              '("notes" .
 417                "~/projects/research/paper_notes.org::#%s"))
 418
 419 ; I pretty much always want hiearchical checkboxes
 420 (setq org-hierachical-checkbox-statistics nil)
 421
 422 ;; Add \begin{equation}\end{equation} templates to the org mode easy templates
 423 (add-to-list 'org-structure-template-alist
 424              '("E" "\\begin{equation}\n?\n\\end{equation}"))
 425
 426  ;; stolen from
 427 ;; http://www-public.it-sudparis.eu/~berger_o/weblog/2012/03/23/how-to-manage-and-export-bibliographic-notesrefs-in-org-mode/
 428 (defun my-rtcite-export-handler (path desc format)
 429   (message "my-rtcite-export-handler is called : path = %s, desc = %s, format = %s" path desc format)
 430   (let* ((search (when (string-match "::#?\\(.+\\)\\'" path)
 431                    (match-string 1 path)))
 432          (path (substring path 0 (match-beginning 0))))
 433     (cond ((eq format 'latex)
 434            (if (or (not desc)
 435                    (equal 0 (search "rtcite:" desc)))
 436                (format "\\cite{%s}" search)
 437              (format "\\cite[%s]{%s}" desc search))))))
 438
 439 (org-add-link-type "rtcite"
 440                    'org-bibtex-open
 441                    'my-rtcite-export-handler)
 442
 443
 444 (setq-default org-mobile-directory "/rzlab.ucr.edu:/sites/dav.donarmstrong.com/root/org/")
 445 (when (string= system-name "rzlab.ucr.edu")
 446   (setq-default org-mobile-directory "/sites/dav.donarmstrong.com/root/org/"))
 447 (setq-default org-directory "/home/don/org-mode/")
 448 (setq-default org-mobile-inbox-for-pull "/home/don/org-mode/from-mobile.org")
 449
 450 ;; org mode ical export
 451 (setq org-icalendar-timezone "America/Los_Angeles")
 452 (setq org-icalendar-use-scheduled '(todo-start event-if-todo))
 453 ;; we already add the id manually
 454 ;; (setq org-icalendar-store-UID t)
 455
 456 ;; org babel support
 457 (org-babel-do-load-languages
 458  'org-babel-load-languages
 459  '((emacs-lisp . t )
 460    (R . t)
 461    (latex . t)
 462    (ditaa . t)
 463    ))
 464 ;; org-babel-by-backend
 465 (defmacro org-babel-by-backend (&rest body)
 466    `(case (if (boundp 'backend)
 467               (org-export-backend-name backend)
 468             nil) ,@body))
 469
 470
 471
 472 ;; ;; org latex
 473 ;; ;; stolen from http://kieranhealy.org/esk/kjhealy.html
 474 ;; (require 'org-latex)
 475 ;; ;; Choose either listings or minted for exporting source code blocks.
 476 ;; ;; Using minted (as here) requires pygments be installed. To use the
 477 ;; ;; default listings package instead, use
 478 ;; ;; (setq org-latex-listings t)
 479 ;; ;; and change references to "minted" below to "listings"
 480 ;; ; (setq org-latex-listings 'minted)
 481 ;;
 482 ;; ;; default settings for minted code blocks
 483 ;; (setq org-latex-minted-options
 484 ;;       '(;("frame" "single")
 485 ;;         ("bgcolor" "bg") ; bg will need to be defined in the preamble of your document. It's defined in org-preamble-pdflatex.sty and org-preamble-xelatex.sty below.
 486 ;;         ("fontsize" "\\small")
 487 ;;         ))
 488 ;; ;; turn off the default toc behavior; deal with it properly in headers to files.
 489 ;; (defun org-latex-no-toc (depth)
 490 ;;   (when depth
 491 ;;     (format "%% Org-mode is exporting headings to %s levels.\n"
 492 ;;             depth)))
 493 ;; (setq org-latex-format-toc-function 'org-latex-no-toc)
 494
 495 (require 'ox-latex)
 496 (add-to-list 'org-latex-classes
 497              '("memarticle"
 498                "\\documentclass[11pt,oneside,article]{memoir}\n"
 499                ("\\section{%s}" . "\\section*{%s}")
 500                ("\\subsection{%s}" . "\\subsection*{%s}")
 501                ("\\subsubsection{%s}" . "\\subsubsection*{%s}")
 502                ("\\paragraph{%s}" . "\\paragraph*{%s}")
 503                ("\\subparagraph{%s}" . "\\subparagraph*{%s}")))
 504
 505 (setq org-beamer-outline-frame-options "")
 506 (require 'ox-beamer)
 507 (add-to-list 'org-latex-classes
 508              '("beamer"
 509                "\\documentclass[ignorenonframetext]{beamer}
 510 [NO-DEFAULT-PACKAGES]
 511 [PACKAGES]
 512 [EXTRA]"
 513                ("\\section{%s}" . "\\section*{%s}")
 514                ("\\subsection{%s}" . "\\subsection*{%s}")
 515                ("\\subsubsection{%s}" . "\\subsubsection*{%s}")
 516                ("\\paragraph{%s}" . "\\paragraph*{%s}")
 517                ("\\subparagraph{%s}" . "\\subparagraph*{%s}")))
 518
 519 (add-to-list 'org-latex-classes
 520              '("membook"
 521                "\\documentclass[11pt,oneside]{memoir}\n"
 522                ("\\chapter{%s}" . "\\chapter*{%s}")
 523                ("\\section{%s}" . "\\section*{%s}")
 524                ("\\subsection{%s}" . "\\subsection*{%s}")
 525                ("\\subsubsection{%s}" . "\\subsubsection*{%s}")))
 526
 527 (add-to-list 'org-latex-classes
 528              '("letter"
 529                "\\documentclass[11pt]{letter}
 530 [NO-DEFAULT-PACKAGES]
 531 [PACKAGES]
 532 [EXTRA]"
 533        ("\\section{%s}" . "\\section*{%s}")
 534                ("\\subsection{%s}" . "\\subsection*{%s}")
 535                ("\\subsubsection{%s}" . "\\subsubsection*{%s}")
 536                ("\\paragraph{%s}" . "\\paragraph*{%s}")
 537                ("\\subparagraph{%s}" . "\\subparagraph*{%s}")))
 538
 539 ;; Originally taken from Bruno Tavernier: http://thread.gmane.org/gmane.emacs.orgmode/31150/focus=31432
 540 ;; but adapted to use latexmk 4.22 or higher.
 541 (setq org-latex-pdf-process '("latexmk -pdflatex=xelatex -bibtex -use-make -pdf %f"))
 542
 543 ;; Default packages included in /every/ tex file, latex, pdflatex or xelatex
 544 (setq org-latex-default-packages-alist
 545       '(("" "amsmath" t)))
 546 (setq org-latex-packages-alist
 547       '(("" "graphicx" t)
 548         ("" "fontspec" t)
 549         ("" "xunicode" t)
 550         ("" "hyperref" t)
 551         ("" "url" t)
 552         ("" "rotating" t)
 553         ("" "longtable" nil)
 554         ("" "float" )))
 555
 556 (defun org-create-formula--latex-header ()
 557   "Return LaTeX header appropriate for previewing a LaTeX snippet."
 558   (let ((info (org-combine-plists (org-export--get-global-options
 559                                    (org-export-get-backend 'latex))
 560                                   (org-export--get-inbuffer-options
 561                                    (org-export-get-backend 'latex)))))
 562     (org-latex-guess-babel-language
 563      (org-latex-guess-inputenc
 564       (org-splice-latex-header
 565        org-format-latex-header
 566        org-latex-default-packages-alist
 567        nil t
 568        (plist-get info :latex-header)))
 569      info)))
 570
 571
 572 ; support ignoring headers in org mode export to latex
 573 ; from http://article.gmane.org/gmane.emacs.orgmode/67692
 574 (defadvice org-latex-headline (around my-latex-skip-headlines
 575                                       (headline contents info) activate)
 576   (if (member "ignoreheading" (org-element-property :tags headline))
 577       (setq ad-return-value contents)
 578     ad-do-it))
 579
 580 ;; keep latex logfiles
 581
 582 (setq org-latex-remove-logfiles nil)
 583
 584 ;; helper functions
 585 (defun bh/is-project-p ()
 586   "Any task with a todo keyword subtask"
 587   (save-restriction
 588     (widen)
 589     (let ((has-subtask)
 590           (subtree-end (save-excursion (org-end-of-subtree t)))
 591           (is-a-task (member (nth 2 (org-heading-components)) org-todo-keywords-1)))
 592       (save-excursion
 593         (forward-line 1)
 594         (while (and (not has-subtask)
 595                     (< (point) subtree-end)
 596                     (re-search-forward "^\*+ " subtree-end t))
 597           (when (member (org-get-todo-state) org-todo-keywords-1)
 598             (setq has-subtask t))))
 599       (and is-a-task has-subtask))))
 600
 601 (defun bh/is-project-subtree-p ()
 602   "Any task with a todo keyword that is in a project subtree.
 603 Callers of this function already widen the buffer view."
 604   (let ((task (save-excursion (org-back-to-heading 'invisible-ok)
 605                               (point))))
 606     (save-excursion
 607       (bh/find-project-task)
 608       (if (equal (point) task)
 609           nil
 610         t))))
 611
 612 (defun bh/is-task-p ()
 613   "Any task with a todo keyword and no subtask"
 614   (save-restriction
 615     (widen)
 616     (let ((has-subtask)
 617           (subtree-end (save-excursion (org-end-of-subtree t)))
 618           (is-a-task (member (nth 2 (org-heading-components)) org-todo-keywords-1)))
 619       (save-excursion
 620         (forward-line 1)
 621         (while (and (not has-subtask)
 622                     (< (point) subtree-end)
 623                     (re-search-forward "^\*+ " subtree-end t))
 624           (when (member (org-get-todo-state) org-todo-keywords-1)
 625             (setq has-subtask t))))
 626       (and is-a-task (not has-subtask)))))
 627
 628 (defun bh/is-subproject-p ()
 629   "Any task which is a subtask of another project"
 630   (let ((is-subproject)
 631         (is-a-task (member (nth 2 (org-heading-components)) org-todo-keywords-1)))
 632     (save-excursion
 633       (while (and (not is-subproject) (org-up-heading-safe))
 634         (when (member (nth 2 (org-heading-components)) org-todo-keywords-1)
 635           (setq is-subproject t))))
 636     (and is-a-task is-subproject)))
 637
 638 (defun bh/list-sublevels-for-projects-indented ()
 639   "Set org-tags-match-list-sublevels so when restricted to a subtree we list all subtasks.
 640   This is normally used by skipping functions where this variable is already local to the agenda."
 641   (if (marker-buffer org-agenda-restrict-begin)
 642       (setq org-tags-match-list-sublevels 'indented)
 643     (setq org-tags-match-list-sublevels nil))
 644   nil)
 645
 646 (defun bh/list-sublevels-for-projects ()
 647   "Set org-tags-match-list-sublevels so when restricted to a subtree we list all subtasks.
 648   This is normally used by skipping functions where this variable is already local to the agenda."
 649   (if (marker-buffer org-agenda-restrict-begin)
 650       (setq org-tags-match-list-sublevels t)
 651     (setq org-tags-match-list-sublevels nil))
 652   nil)
 653
 654 (defvar bh/hide-scheduled-and-waiting-next-tasks t)
 655
 656 (defun bh/toggle-next-task-display ()
 657   (interactive)
 658   (setq bh/hide-scheduled-and-waiting-next-tasks (not bh/hide-scheduled-and-waiting-next-tasks))
 659   (when  (equal major-mode 'org-agenda-mode)
 660     (org-agenda-redo))
 661   (message "%s WAITING and SCHEDULED NEXT Tasks" (if bh/hide-scheduled-and-waiting-next-tasks "Hide" "Show")))
 662
 663 (defun bh/skip-stuck-projects ()
 664   "Skip trees that are not stuck projects"
 665   (save-restriction
 666     (widen)
 667     (let ((next-headline (save-excursion (or (outline-next-heading) (point-max)))))
 668       (if (bh/is-project-p)
 669           (let* ((subtree-end (save-excursion (org-end-of-subtree t)))
 670                  (has-next ))
 671             (save-excursion
 672               (forward-line 1)
 673               (while (and (not has-next) (< (point) subtree-end) (re-search-forward "^\\*+ NEXT " subtree-end t))
 674                 (unless (member "WAITING" (org-get-tags-at))
 675                   (setq has-next t))))
 676             (if has-next
 677                 nil
 678               next-headline)) ; a stuck project, has subtasks but no next task
 679         nil))))
 680
 681 (defun bh/skip-non-stuck-projects ()
 682   "Skip trees that are not stuck projects"
 683   ;; (bh/list-sublevels-for-projects-indented)
 684   (save-restriction
 685     (widen)
 686     (let ((next-headline (save-excursion (or (outline-next-heading) (point-max)))))
 687       (if (bh/is-project-p)
 688           (let* ((subtree-end (save-excursion (org-end-of-subtree t)))
 689                  (has-next ))
 690             (save-excursion
 691               (forward-line 1)
 692               (while (and (not has-next) (< (point) subtree-end) (re-search-forward "^\\*+ NEXT " subtree-end t))
 693                 (unless (member "WAITING" (org-get-tags-at))
 694                   (setq has-next t))))
 695             (if has-next
 696                 next-headline
 697               nil)) ; a stuck project, has subtasks but no next task
 698         next-headline))))
 699
 700 (defun bh/skip-non-projects ()
 701   "Skip trees that are not projects"
 702   ;; (bh/list-sublevels-for-projects-indented)
 703   (if (save-excursion (bh/skip-non-stuck-projects))
 704       (save-restriction
 705         (widen)
 706         (let ((subtree-end (save-excursion (org-end-of-subtree t))))
 707           (cond
 708            ((bh/is-project-p)
 709             nil)
 710            ((and (bh/is-project-subtree-p) (not (bh/is-task-p)))
 711             nil)
 712            (t
 713             subtree-end))))
 714     (save-excursion (org-end-of-subtree t))))
 715
 716 (defun bh/skip-project-trees-and-habits ()
 717   "Skip trees that are projects"
 718   (save-restriction
 719     (widen)
 720     (let ((subtree-end (save-excursion (org-end-of-subtree t))))
 721       (cond
 722        ((bh/is-project-p)
 723         subtree-end)
 724        ((org-is-habit-p)
 725         subtree-end)
 726        (t
 727         nil)))))
 728
 729 (defun bh/skip-projects-and-habits-and-single-tasks ()
 730   "Skip trees that are projects, tasks that are habits, single non-project tasks"
 731   (save-restriction
 732     (widen)
 733     (let ((next-headline (save-excursion (or (outline-next-heading) (point-max)))))
 734       (cond
 735        ((org-is-habit-p)
 736         next-headline)
 737        ((and bh/hide-scheduled-and-waiting-next-tasks
 738              (member "WAITING" (org-get-tags-at)))
 739         next-headline)
 740        ((bh/is-project-p)
 741         next-headline)
 742        ((and (bh/is-task-p) (not (bh/is-project-subtree-p)))
 743         next-headline)
 744        (t
 745         nil)))))
 746
 747 (defun bh/skip-project-tasks-maybe ()
 748   "Show tasks related to the current restriction.
 749 When restricted to a project, skip project and sub project tasks, habits, NEXT tasks, and loose tasks.
 750 When not restricted, skip project and sub-project tasks, habits, and project related tasks."
 751   (save-restriction
 752     (widen)
 753     (let* ((subtree-end (save-excursion (org-end-of-subtree t)))
 754            (next-headline (save-excursion (or (outline-next-heading) (point-max))))
 755            (limit-to-project (marker-buffer org-agenda-restrict-begin)))
 756       (cond
 757        ((bh/is-project-p)
 758         next-headline)
 759        ((org-is-habit-p)
 760         subtree-end)
 761        ((and (not limit-to-project)
 762              (bh/is-project-subtree-p))
 763         subtree-end)
 764        ((and limit-to-project
 765              (bh/is-project-subtree-p)
 766              (member (org-get-todo-state) (list "NEXT")))
 767         subtree-end)
 768        (t
 769         nil)))))
 770
 771 (defun bh/skip-project-tasks ()
 772   "Show non-project tasks.
 773 Skip project and sub-project tasks, habits, and project related tasks."
 774   (save-restriction
 775     (widen)
 776     (let* ((subtree-end (save-excursion (org-end-of-subtree t))))
 777       (cond
 778        ((bh/is-project-p)
 779         subtree-end)
 780        ((org-is-habit-p)
 781         subtree-end)
 782        ((bh/is-project-subtree-p)
 783         subtree-end)
 784        (t
 785         nil)))))
 786
 787 (defun bh/skip-non-project-tasks ()
 788   "Show project tasks.
 789 Skip project and sub-project tasks, habits, and loose non-project tasks."
 790   (save-restriction
 791     (widen)
 792     (let* ((subtree-end (save-excursion (org-end-of-subtree t)))
 793            (next-headline (save-excursion (or (outline-next-heading) (point-max)))))
 794       (cond
 795        ((bh/is-project-p)
 796         next-headline)
 797        ((org-is-habit-p)
 798         subtree-end)
 799        ((and (bh/is-project-subtree-p)
 800              (member (org-get-todo-state) (list "NEXT")))
 801         subtree-end)
 802        ((not (bh/is-project-subtree-p))
 803         subtree-end)
 804        (t
 805         nil)))))
 806
 807 (defun bh/skip-projects-and-habits ()
 808   "Skip trees that are projects and tasks that are habits"
 809   (save-restriction
 810     (widen)
 811     (let ((subtree-end (save-excursion (org-end-of-subtree t))))
 812       (cond
 813        ((bh/is-project-p)
 814         subtree-end)
 815        ((org-is-habit-p)
 816         subtree-end)
 817        (t
 818         nil)))))
 819
 820 (defun bh/skip-non-subprojects ()
 821   "Skip trees that are not projects"
 822   (let ((next-headline (save-excursion (outline-next-heading))))
 823     (if (bh/is-subproject-p)
 824         nil
 825       next-headline)))
 826 ;
 827 ;; Resume clocking task when emacs is restarted
 828 (org-clock-persistence-insinuate)
 829 ;;
 830 ;; Show lot of clocking history so it's easy to pick items off the C-F11 list
 831 (setq org-clock-history-length 23)
 832 ;; Resume clocking task on clock-in if the clock is open
 833 (setq org-clock-in-resume t)
 834 ;; Change tasks to NEXT when clocking in
 835 (setq org-clock-in-switch-to-state 'bh/clock-in-to-next)
 836 ;; Separate drawers for clocking and logs
 837 (setq org-drawers (quote ("PROPERTIES" "LOGBOOK")))
 838 ;; Save clock data and state changes and notes in the LOGBOOK drawer
 839 (setq org-clock-into-drawer t)
 840 (setq org-log-into-drawer t)
 841 ;; Sometimes I change tasks I'm clocking quickly - this removes clocked tasks with 0:00 duration
 842 (setq org-clock-out-remove-zero-time-clocks t)
 843 ;; Clock out when moving task to a done state
 844 (setq org-clock-out-when-done t)
 845 ;; Save the running clock and all clock history when exiting Emacs, load it on startup
 846 (setq org-clock-persist t)
 847 ;; Do not prompt to resume an active clock
 848 (setq org-clock-persist-query-resume nil)
 849 ;; Enable auto clock resolution for finding open clocks
 850 (setq org-clock-auto-clock-resolution (quote when-no-clock-is-running))
 851 ;; Include current clocking task in clock reports
 852 (setq org-clock-report-include-clocking-task t)
 853
 854
 855 (defvar bh/keep-clock-running nil)
 856
 857 (defun bh/clock-in-to-next (kw)
 858   "Switch a task from TODO to NEXT when clocking in.
 859 Skips capture tasks, projects, and subprojects.
 860 Switch projects and subprojects from NEXT back to TODO"
 861   (when (not (and (boundp 'org-capture-mode) org-capture-mode))
 862     (cond
 863      ((and (member (org-get-todo-state) (list "TODO"))
 864            (bh/is-task-p))
 865       "NEXT")
 866      ((and (member (org-get-todo-state) (list "NEXT"))
 867            (bh/is-project-p))
 868       "TODO"))))
 869
 870 (defun bh/find-project-task ()
 871   "Move point to the parent (project) task if any"
 872   (save-restriction
 873     (widen)
 874     (let ((parent-task (save-excursion (org-back-to-heading 'invisible-ok) (point))))
 875       (while (org-up-heading-safe)
 876         (when (member (nth 2 (org-heading-components)) org-todo-keywords-1)
 877           (setq parent-task (point))))
 878       (goto-char parent-task)
 879       parent-task)))
 880
 881 (defun bh/punch-in (arg)
 882   "Start continuous clocking and set the default task to the
 883 selected task.  If no task is selected set the Organization task
 884 as the default task."
 885   (interactive "p")
 886   (setq bh/keep-clock-running t)
 887   (if (equal major-mode 'org-agenda-mode)
 888       ;;
 889       ;; We're in the agenda
 890       ;;
 891       (let* ((marker (org-get-at-bol 'org-hd-marker))
 892              (tags (org-with-point-at marker (org-get-tags-at))))
 893         (if (and (eq arg 4) tags)
 894             (org-agenda-clock-in '(16))
 895           (bh/clock-in-organization-task-as-default)))
 896     ;;
 897     ;; We are not in the agenda
 898     ;;
 899     (save-restriction
 900       (widen)
 901       ; Find the tags on the current task
 902       (if (and (equal major-mode 'org-mode) (not (org-before-first-heading-p)) (eq arg 4))
 903           (org-clock-in '(16))
 904         (bh/clock-in-organization-task-as-default)))))
 905
 906 (defun bh/punch-out ()
 907   (interactive)
 908   (setq bh/keep-clock-running nil)
 909   (when (org-clock-is-active)
 910     (org-clock-out))
 911   (org-agenda-remove-restriction-lock))
 912
 913 (defun bh/clock-in-default-task ()
 914   (save-excursion
 915     (org-with-point-at org-clock-default-task
 916       (org-clock-in))))
 917
 918 (defun bh/clock-in-parent-task ()
 919   "Move point to the parent (project) task if any and clock in"
 920   (let ((parent-task))
 921     (save-excursion
 922       (save-restriction
 923         (widen)
 924         (while (and (not parent-task) (org-up-heading-safe))
 925           (when (member (nth 2 (org-heading-components)) org-todo-keywords-1)
 926             (setq parent-task (point))))
 927         (if parent-task
 928             (org-with-point-at parent-task
 929               (org-clock-in))
 930           (when bh/keep-clock-running
 931             (bh/clock-in-default-task)))))))
 932
 933 (defvar bh/organization-task-id "e22cb8bf-07c7-408b-8f60-ff3aadac95e4")
 934
 935 (defun bh/clock-in-organization-task-as-default ()
 936   (interactive)
 937   (org-with-point-at (org-id-find bh/organization-task-id 'marker)
 938     (org-clock-in '(16))))
 939
 940 (defun bh/clock-out-maybe ()
 941   (when (and bh/keep-clock-running
 942              (not org-clock-clocking-in)
 943              (marker-buffer org-clock-default-task)
 944              (not org-clock-resolving-clocks-due-to-idleness))
 945     (bh/clock-in-parent-task)))
 946
 947 ; (add-hook 'org-clock-out-hook 'bh/clock-out-maybe 'append)
 948
 949 (require 'org-id)
 950 (defun bh/clock-in-task-by-id (id)
 951   "Clock in a task by id"
 952   (org-with-point-at (org-id-find id 'marker)
 953     (org-clock-in nil)))
 954
 955 (defun bh/clock-in-last-task (arg)
 956   "Clock in the interrupted task if there is one
 957 Skip the default task and get the next one.
 958 A prefix arg forces clock in of the default task."
 959   (interactive "p")
 960   (let ((clock-in-to-task
 961          (cond
 962           ((eq arg 4) org-clock-default-task)
 963           ((and (org-clock-is-active)
 964                 (equal org-clock-default-task (cadr org-clock-history)))
 965            (caddr org-clock-history))
 966           ((org-clock-is-active) (cadr org-clock-history))
 967           ((equal org-clock-default-task (car org-clock-history)) (cadr org-clock-history))
 968           (t (car org-clock-history)))))
 969     (widen)
 970     (org-with-point-at clock-in-to-task
 971       (org-clock-in nil))))
 972
 973
 974 (defun org-export-to-ods ()
 975   (interactive)
 976   (let ((csv-file "data.csv"))
 977     (org-table-export csv-file "orgtbl-to-csv")
 978     (org-odt-convert csv-file "ods" 'open)))
 979
 980 ; allow for zero-width-space to be a break in regexp too
 981 ; (setcar org-emphasis-regexp-components " [:space:] \t('\"{")
 982 ; (setcar (nthcdr 1 org-emphasis-regexp-components) " [:space:]- \t.,:!?;'\")}\\")
 983 ; (org-set-emph-re 'org-emphasis-regexp-components org-emphasis-regexp-components)
 984
 985 ;; support inserting screen shots
 986 (defun my/org-insert-screenshot ()
 987   "Take a screenshot into a time stamped unique-named file in the
 988 same directory as the org-buffer and insert a link to this file."
 989   (interactive)
 990   (defvar my/org-insert-screenshot/filename)
 991   (setq my/org-insert-screenshot/filename
 992         (read-file-name
 993          "Screenshot to insert: "
 994          nil
 995          (concat (buffer-file-name) "_" (format-time-string "%Y%m%d_%H%M%S") ".png")
 996          )
 997         )
 998   (call-process "import" nil nil nil my/org-insert-screenshot/filename)
 999   (insert (concat "[[" my/org-insert-screenshot/filename "]]"))
1000   (org-display-inline-images))
1001
1002 (provide 'org-mode-configuration)