emacs_el/configuration/org-mode-configuration.el

   1 (require 'org-id)
   2 (require 'reftex)
   3 (require 'gnus)
   4
   5 ;; The following lines are always needed. Choose your own keys.
   6 (add-to-list 'auto-mode-alist '("\\.\\(org\\|org_archive\\|txt\\)$" . org-mode))
   7 (require 'org)
   8 (global-set-key "\C-cl" 'org-store-link)
   9 (global-set-key "\C-ca" 'org-agenda)
  10 (global-set-key "\C-cb" 'org-iswitchb)
  11 (setq-default org-log-done 'time)
  12 (setq-default org-agenda-ndays 5)
  13
  14 ;; agenda configuration
  15 ;; Do not dim blocked tasks
  16 (setq org-agenda-dim-blocked-tasks nil)
  17
  18 ;; Compact the block agenda view
  19 (setq org-agenda-compact-blocks t)
  20
  21 ;; Custom agenda command definitions
  22 (setq org-agenda-custom-commands
  23       (quote (("N" "Notes" tags "NOTE"
  24                ((org-agenda-overriding-header "Notes")
  25                 (org-tags-match-list-sublevels t)))
  26               ("h" "Habits" tags-todo "STYLE=\"habit\""
  27                ((org-agenda-overriding-header "Habits")
  28                 (org-agenda-sorting-strategy
  29                  '(todo-state-down effort-up category-keep))))
  30               (" " "Agenda"
  31                ((agenda "" nil)
  32                 (tags "REFILE"
  33                       ((org-agenda-overriding-header "Tasks to Refile")
  34                        (org-tags-match-list-sublevels nil)))
  35                 (tags-todo "-CANCELLED/!"
  36                            ((org-agenda-overriding-header "Stuck Projects")
  37                             (org-agenda-skip-function 'bh/skip-non-stuck-projects)
  38                             (org-agenda-sorting-strategy
  39                              '(category-keep))))
  40                 (tags-todo "-HOLD-CANCELLED/!"
  41                            ((org-agenda-overriding-header "Projects")
  42                             (org-agenda-skip-function 'bh/skip-non-projects)
  43                             (org-tags-match-list-sublevels 'indented)
  44                             (org-agenda-sorting-strategy
  45                              '(category-keep))))
  46                 (tags-todo "-CANCELLED/!NEXT"
  47                            ((org-agenda-overriding-header (concat "Project Next Tasks"
  48                                                                   (if bh/hide-scheduled-and-waiting-next-tasks
  49                                                                       ""
  50                                                                     " (including WAITING and SCHEDULED tasks)")))
  51                             (org-agenda-skip-function 'bh/skip-projects-and-habits-and-single-tasks)
  52                             (org-tags-match-list-sublevels t)
  53                             (org-agenda-todo-ignore-scheduled bh/hide-scheduled-and-waiting-next-tasks)
  54                             (org-agenda-todo-ignore-deadlines bh/hide-scheduled-and-waiting-next-tasks)
  55                             (org-agenda-todo-ignore-with-date bh/hide-scheduled-and-waiting-next-tasks)
  56                             (org-agenda-sorting-strategy
  57                              '(todo-state-down effort-up category-keep))))
  58                 (tags-todo "-REFILE-CANCELLED-WAITING-HOLD/!"
  59                            ((org-agenda-overriding-header (concat "Project Subtasks"
  60                                                                   (if bh/hide-scheduled-and-waiting-next-tasks
  61                                                                       ""
  62                                                                     " (including WAITING and SCHEDULED tasks)")))
  63                             (org-agenda-skip-function 'bh/skip-non-project-tasks)
  64                             (org-agenda-todo-ignore-scheduled bh/hide-scheduled-and-waiting-next-tasks)
  65                             (org-agenda-todo-ignore-deadlines bh/hide-scheduled-and-waiting-next-tasks)
  66                             (org-agenda-todo-ignore-with-date bh/hide-scheduled-and-waiting-next-tasks)
  67                             (org-agenda-sorting-strategy
  68                              '(category-keep))))
  69                 (tags-todo "-REFILE-CANCELLED-WAITING-HOLD/!"
  70                            ((org-agenda-overriding-header (concat "Standalone Tasks"
  71                                                                   (if bh/hide-scheduled-and-waiting-next-tasks
  72                                                                       ""
  73                                                                     " (including WAITING and SCHEDULED tasks)")))
  74                             (org-agenda-skip-function 'bh/skip-project-tasks)
  75                             (org-agenda-todo-ignore-scheduled bh/hide-scheduled-and-waiting-next-tasks)
  76                             (org-agenda-todo-ignore-deadlines bh/hide-scheduled-and-waiting-next-tasks)
  77                             (org-agenda-todo-ignore-with-date bh/hide-scheduled-and-waiting-next-tasks)
  78                             (org-agenda-sorting-strategy
  79                              '(category-keep))))
  80                 (tags-todo "-CANCELLED+WAITING|HOLD/!"
  81                            ((org-agenda-overriding-header "Waiting and Postponed Tasks")
  82                             (org-agenda-skip-function 'bh/skip-stuck-projects)
  83                             (org-tags-match-list-sublevels nil)
  84                             (org-agenda-todo-ignore-scheduled t)
  85                             (org-agenda-todo-ignore-deadlines t)))
  86                 (tags "-REFILE/"
  87                       ((org-agenda-overriding-header "Tasks to Archive")
  88                        (org-agenda-skip-function 'bh/skip-non-archivable-tasks)
  89                        (org-tags-match-list-sublevels nil))))
  90                nil))))
  91
  92 ; org mode agenda files
  93 (setq org-agenda-files
  94       (quote ("~/projects/debbugs/debbugs.org"
  95               "~/projects/org-notes/notes.org"
  96               "~/projects/org-notes/refile.org"
  97               "~/projects/org-notes/diary.org"
  98               "~/projects/org-notes/ool.org"
  99               "~/projects/org-notes/sndservers.org"
 100               "~/projects/org-notes/chaim.org"
 101               "~/projects/org-notes/wildman.org"
 102               "~/projects/org-notes/uddin.org"
 103           "~/projects/reviews/reviews.org"
 104               "~/projects/org-notes/fh.org")))
 105
 106 (set-register ?n (cons 'file "~/projects/org-notes/notes.org"))
 107 (set-register ?r (cons 'file "~/projects/org-notes/refile.org"))
 108 (set-register ?o (cons 'file "~/projects/org-notes/ool.org"))
 109 (set-register ?s (cons 'file "~/projects/org-notes/sndservers.org"))
 110 (set-register ?c (cons 'file "~/projects/org-notes/chaim.org"))
 111 (set-register ?w (cons 'file "~/projects/org-notes/wildman.org"))
 112 (set-register ?u (cons 'file "~/projects/org-notes/uddin.org"))
 113 (set-register ?R (cons 'file "~/projects/reviews/reviews.org"))
 114 (set-register ?d (cons 'file "~/projects/org-notes/diary.org"))
 115
 116 (setq org-global-properties '(("Effort_ALL 0 0:10 0:30 1:00 2:00 3:00 4:00 5:00 6:00 7:00")))
 117 (setq org-columns-default-format "%40ITEM(Task) %6Effort{:} %CLOCKSUM %PRIORITY %TODO %13SCHEDULED %13DEADLINE %TAGS")
 118
 119 (setq org-default-notes-file "~/projects/org-notes/notes.org")
 120 (setq org-capture-templates  ;; mail-specific note template, identified by "m"
 121       '(("m" "Mail" entry (file+headline "~/projects/org-notes/refile.org" "Mail")
 122          "* %?\n\n  Source: %u, %c\n  %i")
 123         ("t" "todo" entry (file "~/projects/org-notes/refile.org")
 124          "* TODO %?\n%U\n%a\n" :clock-in t :clock-resume t)
 125         ("r" "respond" entry (file "~/projects/org-notes/refile.org")
 126          "* NEXT Respond to %:from on %:subject\nSCHEDULED: %t\n%U\n%a\n" :clock-in t :clock-resume t :immediate-finish t)
 127         ("n" "note" entry (file "~/projects/org-notes/refile.org")
 128          "* %? :NOTE:\n%U\n%a\n" :clock-in t :clock-resume t)
 129         ("s" "schedule" entry (file "~/projects/org-notes/refile.org")
 130          "* %? \n%^{scheduled:}t\n%U\n%a\n" :clock-in t :clock-resume t)
 131         ("j" "Journal" entry (file+datetree "~/projects/org-notes/diary.org")
 132          "* %?\n%U\n" :clock-in t :clock-resume t)
 133         ("w" "org-protocol" entry (file "~/projects/org-notes/refile.org")
 134          "* TODO Review %c\n%U\n" :immediate-finish t)
 135         ("M" "Meeting" entry (file "~/projects/org-notes/refile.org")
 136          "* MEETING with %? :MEETING:\n%U" :clock-in t :clock-resume t)
 137         ("p" "Phone call" entry (file "~/projects/org-notes/refile.org")
 138          "* PHONE %? :PHONE:\n%U" :clock-in t :clock-resume t)
 139         ("J" "job" entry (file "~/projects/org-notes/refile.org")
 140          "* TODO Apply for %a%? :job:\nSCHEDULED: %(format-time-string \"<%Y-%m-%d %a 17:00-17:30>\")\n%U\n" :clock-in t :clock-resume t)
 141         ("h" "Habit" entry (file "~/projects/org-notes/refile.org")
 142          "* NEXT %?\n%U\n%a\nSCHEDULED: %(format-time-string \"<%Y-%m-%d %a .+1d/3d>\")\n:PROPERTIES:\n:STYLE: habit\n:REPEAT_TO_STATE: NEXT\n:END:\n")
 143         )
 144       )
 145
 146 ;; Remove empty LOGBOOK drawers on clock out
 147 (defun bh/remove-empty-drawer-on-clock-out ()
 148   (interactive)
 149   (save-excursion
 150     (beginning-of-line 0)
 151     (org-remove-empty-drawer-at "LOGBOOK" (point))))
 152
 153 (defun my/org-add-id ()
 154   (interactive)
 155   (save-excursion
 156     (if (org-current-level)
 157         ()
 158       (forward-char 1)
 159       )
 160     (org-id-get-create)
 161     )
 162 )
 163
 164 ; org mode configuration from http://doc.norang.ca/org-mode.html
 165 ;; Custom Key Bindings
 166 (global-set-key (kbd "<f12>") 'org-agenda)
 167 (global-set-key (kbd "<f5>") 'bh/org-todo)
 168 (global-set-key (kbd "<S-f5>") 'bh/widen)
 169 (global-set-key (kbd "<f7>") 'bh/set-truncate-lines)
 170 (global-set-key (kbd "<f8>") 'org-cycle-agenda-files)
 171 (global-set-key (kbd "<f9> <f9>") 'bh/show-org-agenda)
 172 (global-set-key (kbd "<f9> b") 'bbdb)
 173 (global-set-key (kbd "<f9> c") 'calendar)
 174 (global-set-key (kbd "<f9> f") 'boxquote-insert-file)
 175 (global-set-key (kbd "<f9> h") 'bh/hide-other)
 176 (global-set-key (kbd "<f9> n") 'bh/toggle-next-task-display)
 177 (global-set-key (kbd "<f9> w") 'widen)
 178
 179 ; change the outline mode prefix from C-c @ to C-c C-2
 180 (setq outline-minor-mode-prefix "C-c C-2")
 181 (add-hook 'outline-minor-mode-hook
 182           (lambda () (local-set-key (kbd "C-c C-2")
 183                                     outline-mode-prefix-map)))
 184
 185 (global-set-key (kbd "<f9> I") 'bh/punch-in)
 186 (global-set-key (kbd "<f9> O") 'bh/punch-out)
 187
 188 (global-set-key (kbd "<f9> o") 'bh/make-org-scratch)
 189
 190 (global-set-key (kbd "<f9> r") 'boxquote-region)
 191 (global-set-key (kbd "<f9> s") 'bh/switch-to-scratch)
 192
 193 (global-set-key (kbd "<f9> t") 'bh/insert-inactive-timestamp)
 194 (global-set-key (kbd "<f9> T") 'bh/toggle-insert-inactive-timestamp)
 195
 196 (global-set-key (kbd "<f9> v") 'visible-mode)
 197 (global-set-key (kbd "<f9> l") 'org-toggle-link-display)
 198 (global-set-key (kbd "<f9> SPC") 'bh/clock-in-last-task)
 199 (global-set-key (kbd "C-<f9>") 'previous-buffer)
 200 (global-set-key (kbd "M-<f9>") 'org-toggle-inline-images)
 201 (global-set-key (kbd "C-x n r") 'narrow-to-region)
 202 (global-set-key (kbd "C-<f10>") 'next-buffer)
 203 (global-set-key (kbd "<f11>") 'org-clock-goto)
 204 (global-set-key (kbd "C-<f11>") 'org-clock-in)
 205 (global-set-key (kbd "C-s-<f12>") 'bh/save-then-publish)
 206 (global-set-key (kbd "C-c c") 'org-capture)
 207
 208 (defun bh/hide-other ()
 209   (interactive)
 210   (save-excursion
 211     (org-back-to-heading 'invisible-ok)
 212     (hide-other)
 213     (org-cycle)
 214     (org-cycle)
 215     (org-cycle)))
 216
 217 (defun bh/set-truncate-lines ()
 218   "Toggle value of truncate-lines and refresh window display."
 219   (interactive)
 220   (setq truncate-lines (not truncate-lines))
 221   ;; now refresh window display (an idiom from simple.el):
 222   (save-excursion
 223     (set-window-start (selected-window)
 224                       (window-start (selected-window)))))
 225
 226 (defun bh/make-org-scratch ()
 227   (interactive)
 228   (find-file "/tmp/publish/scratch.org")
 229   (gnus-make-directory "/tmp/publish"))
 230
 231 (defun bh/switch-to-scratch ()
 232   (interactive)
 233   (switch-to-buffer "*scratch*"))
 234
 235 (setq org-use-fast-todo-selection t)
 236 (setq org-treat-S-cursor-todo-selection-as-state-change nil)
 237
 238 (setq org-todo-keywords
 239       (quote ((sequence "TODO(t)" "NEXT(n)" "|" "DONE(d)")
 240               (sequence "WAITING(w@/!)" "HOLD(h@/!)" "|" "CANCELLED(c@/!)" "PHONE" "MEETING"))))
 241
 242 (setq org-todo-keyword-faces
 243       (quote (("TODO" :foreground "red" :weight bold)
 244               ("NEXT" :foreground "blue" :weight bold)
 245               ("DONE" :foreground "forest green" :weight bold)
 246               ("WAITING" :foreground "orange" :weight bold)
 247               ("HOLD" :foreground "magenta" :weight bold)
 248               ("CANCELLED" :foreground "forest green" :weight bold)
 249               ("MEETING" :foreground "forest green" :weight bold)
 250               ("PHONE" :foreground "forest green" :weight bold))))
 251
 252 (setq org-todo-state-tags-triggers
 253       (quote (("CANCELLED" ("CANCELLED" . t))
 254               ("WAITING" ("WAITING" . t))
 255               ("HOLD" ("WAITING") ("HOLD" . t))
 256               (done ("WAITING") ("HOLD"))
 257               ("TODO" ("WAITING") ("CANCELLED") ("HOLD"))
 258               ("NEXT" ("WAITING") ("CANCELLED") ("HOLD"))
 259               ("DONE" ("WAITING") ("CANCELLED") ("HOLD")))))
 260
 261
 262
 263 (add-hook 'org-clock-out-hook 'bh/remove-empty-drawer-on-clock-out 'append)
 264 ; add ids on creation of nodes
 265 (add-hook 'org-capture-prepare-finalize-hook 'my/org-add-id)
 266 ; create function to create headlines in file. This comes from
 267 ; http://stackoverflow.com/questions/13340616/assign-ids-to-every-entry-in-org-mode
 268 (defun my/org-add-ids-to-headlines-in-file ()
 269   "Add ID properties to all headlines in the current file which
 270 do not already have one."
 271   (interactive)
 272   (org-map-entries 'org-id-get-create))
 273 ; if we wanted to do this to every buffer, do the following:
 274 ; (add-hook 'org-mode-hook
 275 ;           (lambda ()
 276 ;             (add-hook 'before-save-hook 'my/org-add-ids-to-headlines-in-file nil 'local)))
 277
 278
 279 ; resolve clocks after 10 minutes of idle; use xprintidle
 280 ; (setq org-clock-idle-time 10)
 281 ; (setq org-clock-x11idle-program-name "xprintidle")
 282
 283 ; this is from http://doc.norang.ca/org-mode.html#Capture
 284 ; use C-M-r for org mode capture
 285 (global-set-key (kbd "C-M-r") 'org-capture)
 286
 287 ; Targets include this file and any file contributing to the agenda - up to 9 levels deep
 288 (setq org-refile-targets (quote ((nil :maxlevel . 9)
 289                                  (org-agenda-files :maxlevel . 9))))
 290
 291 ; Use full outline paths for refile targets - we file directly with IDO
 292 (setq org-refile-use-outline-path t)
 293
 294 ; Targets complete directly with IDO
 295 (setq org-outline-path-complete-in-steps nil)
 296
 297 ; Allow refile to create parent tasks with confirmation
 298 (setq org-refile-allow-creating-parent-nodes (quote confirm))
 299
 300 ; ; Use IDO for both buffer and file completion and ido-everywhere to t
 301 ; (setq org-completion-use-ido t)
 302 ; (setq ido-everywhere t)
 303 ; (setq ido-max-directory-size 100000)
 304 ; (ido-mode (quote both))
 305 ; ; Use the current window when visiting files and buffers with ido
 306 ; (setq ido-default-file-method 'selected-window)
 307 ; (setq ido-default-buffer-method 'selected-window)
 308 ; ; Use the current window for indirect buffer display
 309 ; (setq org-indirect-buffer-display 'current-window)
 310
 311
 312 ;;;; Refile settings
 313 ; Exclude DONE state tasks from refile targets
 314 (defun bh/verify-refile-target ()
 315   "Exclude todo keywords with a done state from refile targets"
 316   (not (member (nth 2 (org-heading-components)) org-done-keywords)))
 317
 318 (setq org-refile-target-verify-function 'bh/verify-refile-target)
 319
 320 ;; ensure that emacsclient will show just the note to be edited when invoked
 321 ;; from Mutt, and that it will shut down emacsclient once finished;
 322 ;; fallback to legacy behavior when not invoked via org-protocol.
 323 (require 'org-protocol)
 324 (add-hook 'org-capture-mode-hook 'delete-other-windows)
 325 (setq my-org-protocol-flag nil)
 326 (defadvice org-capture-finalize (after delete-frame-at-end activate)
 327   "Delete frame at remember finalization"
 328   (progn (if my-org-protocol-flag (delete-frame))
 329          (setq my-org-protocol-flag nil)))
 330 (defadvice org-capture-refile (around delete-frame-after-refile activate)
 331   "Delete frame at remember refile"
 332   (if my-org-protocol-flag
 333       (progn
 334         (setq my-org-protocol-flag nil)
 335         ad-do-it
 336         (delete-frame))
 337     ad-do-it)
 338   )
 339 (defadvice org-capture-kill (after delete-frame-at-end activate)
 340   "Delete frame at remember abort"
 341   (progn (if my-org-protocol-flag (delete-frame))
 342          (setq my-org-protocol-flag nil)))
 343 (defadvice org-protocol-capture (before set-org-protocol-flag activate)
 344   (setq my-org-protocol-flag t))
 345
 346 (defadvice org-insert-todo-heading (after dla/create-id activate)
 347   (org-id-get-create)
 348   )
 349
 350 ;; org modules
 351 (add-to-list 'org-modules 'org-habit)
 352
 353 ; this comes from http://upsilon.cc/~zack/blog/posts/2010/02/integrating_Mutt_with_Org-mode/
 354 (defun open-mail-in-mutt (message)
 355   "Open a mail message in Mutt, using an external terminal.
 356
 357 Message can be specified either by a path pointing inside a
 358 Maildir, or by Message-ID."
 359   (interactive "MPath or Message-ID: ")
 360   (shell-command
 361    (format "faf xterm -e \"%s %s\""
 362        (substitute-in-file-name "$HOME/bin/mutt_open") message)))
 363
 364 ;; add support for "mutt:ID" links
 365 (org-add-link-type "mutt" 'open-mail-in-mutt)
 366
 367 (defun my-org-mode-setup ()
 368   (load-library "reftex")
 369   (and (buffer-file-name)
 370        (file-exists-p (buffer-file-name))
 371        (progn
 372          (reftex-parse-all)
 373          (reftex-set-cite-format
 374           '((?b . "[[bib:%l][%l-bib]]")
 375             (?n . "[[notes:%l][%l-notes]]")
 376             (?c . "\\cite{%l}")
 377             (?h . "*** %t\n:PROPERTIES:\n:Custom_ID: %l\n:END:\n[[papers:%l][%l xoj]] [[papers-pdf:%l][pdf]]")))
 378          ))
 379   (define-key org-mode-map (kbd "C-c )") 'reftex-citation)
 380   (define-key org-mode-map (kbd "C-c [") 'reftex-citation)
 381   (define-key org-mode-map (kbd "C-c (") 'org-mode-reftex-search)
 382   (define-key org-mode-map (kbd "C-c 0") 'reftex-view-crossref)
 383   )
 384 (add-hook 'org-mode-hook 'my-org-mode-setup)
 385
 386 (defun org-mode-reftex-search ()
 387   (interactive)
 388   (org-open-link-from-string (format "[[notes:%s]]" (first (reftex-citation t)))))
 389
 390 (defun open-research-paper (bibtexkey)
 391   "Open a paper by bibtex key"
 392   (interactive "bibtex key: ")
 393   (shell-command
 394    (format "%s %s"
 395        (substitute-in-file-name "$HOME/bin/bibtex_to_paper") bibtexkey)))
 396 (org-add-link-type "papers" 'open-research-paper)
 397 (defun open-research-paper-pdf (bibtexkey)
 398   "Open a paper pdf by bibtex key"
 399   (interactive "bibtex key: ")
 400   (shell-command
 401    (format "%s -p evince %s"
 402        (substitute-in-file-name "$HOME/bin/bibtex_to_paper") bibtexkey)))
 403 (org-add-link-type "papers-pdf" 'open-research-paper-pdf)
 404
 405 (add-to-list 'org-link-abbrev-alist
 406              '("notes" .
 407                "~/projects/research/paper_notes.org::#%s"))
 408
 409 ; I pretty much always want hiearchical checkboxes
 410 (setq org-hierachical-checkbox-statistics nil)
 411
 412 ;; stolen from
 413 ;; http://www-public.it-sudparis.eu/~berger_o/weblog/2012/03/23/how-to-manage-and-export-bibliographic-notesrefs-in-org-mode/
 414 (defun my-rtcite-export-handler (path desc format)
 415   (message "my-rtcite-export-handler is called : path = %s, desc = %s, format = %s" path desc format)
 416   (let* ((search (when (string-match "::#?\\(.+\\)\\'" path)
 417                    (match-string 1 path)))
 418          (path (substring path 0 (match-beginning 0))))
 419     (cond ((eq format 'latex)
 420            (if (or (not desc)
 421                    (equal 0 (search "rtcite:" desc)))
 422                (format "\\cite{%s}" search)
 423              (format "\\cite[%s]{%s}" desc search))))))
 424
 425 (org-add-link-type "rtcite"
 426                    'org-bibtex-open
 427                    'my-rtcite-export-handler)
 428
 429
 430 (setq-default org-mobile-directory "/rzlab.ucr.edu:/sites/dav.donarmstrong.com/root/org/")
 431 (setq-default org-directory "/home/don/org-mode/")
 432 (setq-default org-mobile-inbox-for-pull "/home/don/org-mode/from-mobile.org")
 433
 434 ;; org mode ical export
 435 (setq org-icalendar-timezone "America/Los_Angeles")
 436 (setq org-icalendar-use-scheduled '(todo-start event-if-todo))
 437 ;; we already add the id manually
 438 ;; (setq org-icalendar-store-UID t)
 439
 440 ;; org babel support
 441 (org-babel-do-load-languages
 442  'org-babel-load-languages
 443  '((emacs-lisp . t )
 444    (R . t)
 445    (latex . t)
 446    (ditaa . t)
 447    ))
 448 ;; org-babel-by-backend
 449 (defmacro org-babel-by-backend (&rest body)
 450    `(case (if (boundp 'backend)
 451               (org-export-backend-name backend)
 452             nil) ,@body))
 453
 454
 455
 456 ;; ;; org latex
 457 ;; ;; stolen from http://kieranhealy.org/esk/kjhealy.html
 458 ;; (require 'org-latex)
 459 ;; ;; Choose either listings or minted for exporting source code blocks.
 460 ;; ;; Using minted (as here) requires pygments be installed. To use the
 461 ;; ;; default listings package instead, use
 462 ;; ;; (setq org-latex-listings t)
 463 ;; ;; and change references to "minted" below to "listings"
 464 ;; ; (setq org-latex-listings 'minted)
 465 ;;
 466 ;; ;; default settings for minted code blocks
 467 ;; (setq org-latex-minted-options
 468 ;;       '(;("frame" "single")
 469 ;;         ("bgcolor" "bg") ; bg will need to be defined in the preamble of your document. It's defined in org-preamble-pdflatex.sty and org-preamble-xelatex.sty below.
 470 ;;         ("fontsize" "\\small")
 471 ;;         ))
 472 ;; ;; turn off the default toc behavior; deal with it properly in headers to files.
 473 ;; (defun org-latex-no-toc (depth)
 474 ;;   (when depth
 475 ;;     (format "%% Org-mode is exporting headings to %s levels.\n"
 476 ;;             depth)))
 477 ;; (setq org-latex-format-toc-function 'org-latex-no-toc)
 478
 479 (require 'ox-latex)
 480 (add-to-list 'org-latex-classes
 481              '("memarticle"
 482                "\\documentclass[11pt,oneside,article]{memoir}\n"
 483                ("\\section{%s}" . "\\section*{%s}")
 484                ("\\subsection{%s}" . "\\subsection*{%s}")
 485                ("\\subsubsection{%s}" . "\\subsubsection*{%s}")
 486                ("\\paragraph{%s}" . "\\paragraph*{%s}")
 487                ("\\subparagraph{%s}" . "\\subparagraph*{%s}")))
 488
 489 (setq org-beamer-outline-frame-options "")
 490 (require 'ox-beamer)
 491 (add-to-list 'org-latex-classes
 492              '("beamer"
 493                "\\documentclass[ignorenonframetext]{beamer}
 494 [NO-DEFAULT-PACKAGES]
 495 [PACKAGES]
 496 [EXTRA]"
 497                ("\\section{%s}" . "\\section*{%s}")
 498                ("\\subsection{%s}" . "\\subsection*{%s}")
 499                ("\\subsubsection{%s}" . "\\subsubsection*{%s}")
 500                ("\\paragraph{%s}" . "\\paragraph*{%s}")
 501                ("\\subparagraph{%s}" . "\\subparagraph*{%s}")))
 502
 503 (add-to-list 'org-latex-classes
 504              '("membook"
 505                "\\documentclass[11pt,oneside]{memoir}\n"
 506                ("\\chapter{%s}" . "\\chapter*{%s}")
 507                ("\\section{%s}" . "\\section*{%s}")
 508                ("\\subsection{%s}" . "\\subsection*{%s}")
 509                ("\\subsubsection{%s}" . "\\subsubsection*{%s}")))
 510
 511 (add-to-list 'org-latex-classes
 512              '("letter"
 513                "\\documentclass[11pt]{letter}
 514 [NO-DEFAULT-PACKAGES]
 515 [PACKAGES]
 516 [EXTRA]"
 517        ("\\section{%s}" . "\\section*{%s}")
 518                ("\\subsection{%s}" . "\\subsection*{%s}")
 519                ("\\subsubsection{%s}" . "\\subsubsection*{%s}")
 520                ("\\paragraph{%s}" . "\\paragraph*{%s}")
 521                ("\\subparagraph{%s}" . "\\subparagraph*{%s}")))
 522
 523 ;; Originally taken from Bruno Tavernier: http://thread.gmane.org/gmane.emacs.orgmode/31150/focus=31432
 524 ;; but adapted to use latexmk 4.22 or higher.
 525 (setq org-latex-pdf-process '("latexmk -pdflatex=xelatex -bibtex -use-make -pdf %f"))
 526
 527 ;; Default packages included in /every/ tex file, latex, pdflatex or xelatex
 528 (setq org-latex-default-packages-alist
 529       '())
 530 (setq org-latex-packages-alist
 531       '(("" "graphicx" t)
 532         ("" "fontspec" t)
 533         ("" "xunicode" t)
 534         ("" "hyperref" t)
 535         ("" "url" t)
 536         ("" "rotating" t)
 537         ("" "longtable" nil)
 538         ("" "float" )))
 539
 540 (defun org-create-formula--latex-header ()
 541   "Return LaTeX header appropriate for previewing a LaTeX snippet."
 542   (let ((info (org-combine-plists (org-export--get-global-options
 543                                    (org-export-get-backend 'latex))
 544                                   (org-export--get-inbuffer-options
 545                                    (org-export-get-backend 'latex)))))
 546     (org-latex-guess-babel-language
 547      (org-latex-guess-inputenc
 548       (org-splice-latex-header
 549        org-format-latex-header
 550        org-latex-default-packages-alist
 551        nil t
 552        (plist-get info :latex-header)))
 553      info)))
 554
 555
 556 ; support ignoring headers in org mode export to latex
 557 ; from http://article.gmane.org/gmane.emacs.orgmode/67692
 558 (defadvice org-latex-headline (around my-latex-skip-headlines
 559                                       (headline contents info) activate)
 560   (if (member "ignoreheading" (org-element-property :tags headline))
 561       (setq ad-return-value contents)
 562     ad-do-it))
 563
 564 ;; keep latex logfiles
 565
 566 (setq org-latex-remove-logfiles nil)
 567
 568 ;; helper functions
 569 (defun bh/is-project-p ()
 570   "Any task with a todo keyword subtask"
 571   (save-restriction
 572     (widen)
 573     (let ((has-subtask)
 574           (subtree-end (save-excursion (org-end-of-subtree t)))
 575           (is-a-task (member (nth 2 (org-heading-components)) org-todo-keywords-1)))
 576       (save-excursion
 577         (forward-line 1)
 578         (while (and (not has-subtask)
 579                     (< (point) subtree-end)
 580                     (re-search-forward "^\*+ " subtree-end t))
 581           (when (member (org-get-todo-state) org-todo-keywords-1)
 582             (setq has-subtask t))))
 583       (and is-a-task has-subtask))))
 584
 585 (defun bh/is-project-subtree-p ()
 586   "Any task with a todo keyword that is in a project subtree.
 587 Callers of this function already widen the buffer view."
 588   (let ((task (save-excursion (org-back-to-heading 'invisible-ok)
 589                               (point))))
 590     (save-excursion
 591       (bh/find-project-task)
 592       (if (equal (point) task)
 593           nil
 594         t))))
 595
 596 (defun bh/is-task-p ()
 597   "Any task with a todo keyword and no subtask"
 598   (save-restriction
 599     (widen)
 600     (let ((has-subtask)
 601           (subtree-end (save-excursion (org-end-of-subtree t)))
 602           (is-a-task (member (nth 2 (org-heading-components)) org-todo-keywords-1)))
 603       (save-excursion
 604         (forward-line 1)
 605         (while (and (not has-subtask)
 606                     (< (point) subtree-end)
 607                     (re-search-forward "^\*+ " subtree-end t))
 608           (when (member (org-get-todo-state) org-todo-keywords-1)
 609             (setq has-subtask t))))
 610       (and is-a-task (not has-subtask)))))
 611
 612 (defun bh/is-subproject-p ()
 613   "Any task which is a subtask of another project"
 614   (let ((is-subproject)
 615         (is-a-task (member (nth 2 (org-heading-components)) org-todo-keywords-1)))
 616     (save-excursion
 617       (while (and (not is-subproject) (org-up-heading-safe))
 618         (when (member (nth 2 (org-heading-components)) org-todo-keywords-1)
 619           (setq is-subproject t))))
 620     (and is-a-task is-subproject)))
 621
 622 (defun bh/list-sublevels-for-projects-indented ()
 623   "Set org-tags-match-list-sublevels so when restricted to a subtree we list all subtasks.
 624   This is normally used by skipping functions where this variable is already local to the agenda."
 625   (if (marker-buffer org-agenda-restrict-begin)
 626       (setq org-tags-match-list-sublevels 'indented)
 627     (setq org-tags-match-list-sublevels nil))
 628   nil)
 629
 630 (defun bh/list-sublevels-for-projects ()
 631   "Set org-tags-match-list-sublevels so when restricted to a subtree we list all subtasks.
 632   This is normally used by skipping functions where this variable is already local to the agenda."
 633   (if (marker-buffer org-agenda-restrict-begin)
 634       (setq org-tags-match-list-sublevels t)
 635     (setq org-tags-match-list-sublevels nil))
 636   nil)
 637
 638 (defvar bh/hide-scheduled-and-waiting-next-tasks t)
 639
 640 (defun bh/toggle-next-task-display ()
 641   (interactive)
 642   (setq bh/hide-scheduled-and-waiting-next-tasks (not bh/hide-scheduled-and-waiting-next-tasks))
 643   (when  (equal major-mode 'org-agenda-mode)
 644     (org-agenda-redo))
 645   (message "%s WAITING and SCHEDULED NEXT Tasks" (if bh/hide-scheduled-and-waiting-next-tasks "Hide" "Show")))
 646
 647 (defun bh/skip-stuck-projects ()
 648   "Skip trees that are not stuck projects"
 649   (save-restriction
 650     (widen)
 651     (let ((next-headline (save-excursion (or (outline-next-heading) (point-max)))))
 652       (if (bh/is-project-p)
 653           (let* ((subtree-end (save-excursion (org-end-of-subtree t)))
 654                  (has-next ))
 655             (save-excursion
 656               (forward-line 1)
 657               (while (and (not has-next) (< (point) subtree-end) (re-search-forward "^\\*+ NEXT " subtree-end t))
 658                 (unless (member "WAITING" (org-get-tags-at))
 659                   (setq has-next t))))
 660             (if has-next
 661                 nil
 662               next-headline)) ; a stuck project, has subtasks but no next task
 663         nil))))
 664
 665 (defun bh/skip-non-stuck-projects ()
 666   "Skip trees that are not stuck projects"
 667   ;; (bh/list-sublevels-for-projects-indented)
 668   (save-restriction
 669     (widen)
 670     (let ((next-headline (save-excursion (or (outline-next-heading) (point-max)))))
 671       (if (bh/is-project-p)
 672           (let* ((subtree-end (save-excursion (org-end-of-subtree t)))
 673                  (has-next ))
 674             (save-excursion
 675               (forward-line 1)
 676               (while (and (not has-next) (< (point) subtree-end) (re-search-forward "^\\*+ NEXT " subtree-end t))
 677                 (unless (member "WAITING" (org-get-tags-at))
 678                   (setq has-next t))))
 679             (if has-next
 680                 next-headline
 681               nil)) ; a stuck project, has subtasks but no next task
 682         next-headline))))
 683
 684 (defun bh/skip-non-projects ()
 685   "Skip trees that are not projects"
 686   ;; (bh/list-sublevels-for-projects-indented)
 687   (if (save-excursion (bh/skip-non-stuck-projects))
 688       (save-restriction
 689         (widen)
 690         (let ((subtree-end (save-excursion (org-end-of-subtree t))))
 691           (cond
 692            ((bh/is-project-p)
 693             nil)
 694            ((and (bh/is-project-subtree-p) (not (bh/is-task-p)))
 695             nil)
 696            (t
 697             subtree-end))))
 698     (save-excursion (org-end-of-subtree t))))
 699
 700 (defun bh/skip-project-trees-and-habits ()
 701   "Skip trees that are projects"
 702   (save-restriction
 703     (widen)
 704     (let ((subtree-end (save-excursion (org-end-of-subtree t))))
 705       (cond
 706        ((bh/is-project-p)
 707         subtree-end)
 708        ((org-is-habit-p)
 709         subtree-end)
 710        (t
 711         nil)))))
 712
 713 (defun bh/skip-projects-and-habits-and-single-tasks ()
 714   "Skip trees that are projects, tasks that are habits, single non-project tasks"
 715   (save-restriction
 716     (widen)
 717     (let ((next-headline (save-excursion (or (outline-next-heading) (point-max)))))
 718       (cond
 719        ((org-is-habit-p)
 720         next-headline)
 721        ((and bh/hide-scheduled-and-waiting-next-tasks
 722              (member "WAITING" (org-get-tags-at)))
 723         next-headline)
 724        ((bh/is-project-p)
 725         next-headline)
 726        ((and (bh/is-task-p) (not (bh/is-project-subtree-p)))
 727         next-headline)
 728        (t
 729         nil)))))
 730
 731 (defun bh/skip-project-tasks-maybe ()
 732   "Show tasks related to the current restriction.
 733 When restricted to a project, skip project and sub project tasks, habits, NEXT tasks, and loose tasks.
 734 When not restricted, skip project and sub-project tasks, habits, and project related tasks."
 735   (save-restriction
 736     (widen)
 737     (let* ((subtree-end (save-excursion (org-end-of-subtree t)))
 738            (next-headline (save-excursion (or (outline-next-heading) (point-max))))
 739            (limit-to-project (marker-buffer org-agenda-restrict-begin)))
 740       (cond
 741        ((bh/is-project-p)
 742         next-headline)
 743        ((org-is-habit-p)
 744         subtree-end)
 745        ((and (not limit-to-project)
 746              (bh/is-project-subtree-p))
 747         subtree-end)
 748        ((and limit-to-project
 749              (bh/is-project-subtree-p)
 750              (member (org-get-todo-state) (list "NEXT")))
 751         subtree-end)
 752        (t
 753         nil)))))
 754
 755 (defun bh/skip-project-tasks ()
 756   "Show non-project tasks.
 757 Skip project and sub-project tasks, habits, and project related tasks."
 758   (save-restriction
 759     (widen)
 760     (let* ((subtree-end (save-excursion (org-end-of-subtree t))))
 761       (cond
 762        ((bh/is-project-p)
 763         subtree-end)
 764        ((org-is-habit-p)
 765         subtree-end)
 766        ((bh/is-project-subtree-p)
 767         subtree-end)
 768        (t
 769         nil)))))
 770
 771 (defun bh/skip-non-project-tasks ()
 772   "Show project tasks.
 773 Skip project and sub-project tasks, habits, and loose non-project tasks."
 774   (save-restriction
 775     (widen)
 776     (let* ((subtree-end (save-excursion (org-end-of-subtree t)))
 777            (next-headline (save-excursion (or (outline-next-heading) (point-max)))))
 778       (cond
 779        ((bh/is-project-p)
 780         next-headline)
 781        ((org-is-habit-p)
 782         subtree-end)
 783        ((and (bh/is-project-subtree-p)
 784              (member (org-get-todo-state) (list "NEXT")))
 785         subtree-end)
 786        ((not (bh/is-project-subtree-p))
 787         subtree-end)
 788        (t
 789         nil)))))
 790
 791 (defun bh/skip-projects-and-habits ()
 792   "Skip trees that are projects and tasks that are habits"
 793   (save-restriction
 794     (widen)
 795     (let ((subtree-end (save-excursion (org-end-of-subtree t))))
 796       (cond
 797        ((bh/is-project-p)
 798         subtree-end)
 799        ((org-is-habit-p)
 800         subtree-end)
 801        (t
 802         nil)))))
 803
 804 (defun bh/skip-non-subprojects ()
 805   "Skip trees that are not projects"
 806   (let ((next-headline (save-excursion (outline-next-heading))))
 807     (if (bh/is-subproject-p)
 808         nil
 809       next-headline)))
 810 ;
 811 ;; Resume clocking task when emacs is restarted
 812 (org-clock-persistence-insinuate)
 813 ;;
 814 ;; Show lot of clocking history so it's easy to pick items off the C-F11 list
 815 (setq org-clock-history-length 23)
 816 ;; Resume clocking task on clock-in if the clock is open
 817 (setq org-clock-in-resume t)
 818 ;; Change tasks to NEXT when clocking in
 819 (setq org-clock-in-switch-to-state 'bh/clock-in-to-next)
 820 ;; Separate drawers for clocking and logs
 821 (setq org-drawers (quote ("PROPERTIES" "LOGBOOK")))
 822 ;; Save clock data and state changes and notes in the LOGBOOK drawer
 823 (setq org-clock-into-drawer t)
 824 (setq org-log-into-drawer t)
 825 ;; Sometimes I change tasks I'm clocking quickly - this removes clocked tasks with 0:00 duration
 826 (setq org-clock-out-remove-zero-time-clocks t)
 827 ;; Clock out when moving task to a done state
 828 (setq org-clock-out-when-done t)
 829 ;; Save the running clock and all clock history when exiting Emacs, load it on startup
 830 (setq org-clock-persist t)
 831 ;; Do not prompt to resume an active clock
 832 (setq org-clock-persist-query-resume nil)
 833 ;; Enable auto clock resolution for finding open clocks
 834 (setq org-clock-auto-clock-resolution (quote when-no-clock-is-running))
 835 ;; Include current clocking task in clock reports
 836 (setq org-clock-report-include-clocking-task t)
 837
 838
 839 (defvar bh/keep-clock-running nil)
 840
 841 (defun bh/clock-in-to-next (kw)
 842   "Switch a task from TODO to NEXT when clocking in.
 843 Skips capture tasks, projects, and subprojects.
 844 Switch projects and subprojects from NEXT back to TODO"
 845   (when (not (and (boundp 'org-capture-mode) org-capture-mode))
 846     (cond
 847      ((and (member (org-get-todo-state) (list "TODO"))
 848            (bh/is-task-p))
 849       "NEXT")
 850      ((and (member (org-get-todo-state) (list "NEXT"))
 851            (bh/is-project-p))
 852       "TODO"))))
 853
 854 (defun bh/find-project-task ()
 855   "Move point to the parent (project) task if any"
 856   (save-restriction
 857     (widen)
 858     (let ((parent-task (save-excursion (org-back-to-heading 'invisible-ok) (point))))
 859       (while (org-up-heading-safe)
 860         (when (member (nth 2 (org-heading-components)) org-todo-keywords-1)
 861           (setq parent-task (point))))
 862       (goto-char parent-task)
 863       parent-task)))
 864
 865 (defun bh/punch-in (arg)
 866   "Start continuous clocking and set the default task to the
 867 selected task.  If no task is selected set the Organization task
 868 as the default task."
 869   (interactive "p")
 870   (setq bh/keep-clock-running t)
 871   (if (equal major-mode 'org-agenda-mode)
 872       ;;
 873       ;; We're in the agenda
 874       ;;
 875       (let* ((marker (org-get-at-bol 'org-hd-marker))
 876              (tags (org-with-point-at marker (org-get-tags-at))))
 877         (if (and (eq arg 4) tags)
 878             (org-agenda-clock-in '(16))
 879           (bh/clock-in-organization-task-as-default)))
 880     ;;
 881     ;; We are not in the agenda
 882     ;;
 883     (save-restriction
 884       (widen)
 885       ; Find the tags on the current task
 886       (if (and (equal major-mode 'org-mode) (not (org-before-first-heading-p)) (eq arg 4))
 887           (org-clock-in '(16))
 888         (bh/clock-in-organization-task-as-default)))))
 889
 890 (defun bh/punch-out ()
 891   (interactive)
 892   (setq bh/keep-clock-running nil)
 893   (when (org-clock-is-active)
 894     (org-clock-out))
 895   (org-agenda-remove-restriction-lock))
 896
 897 (defun bh/clock-in-default-task ()
 898   (save-excursion
 899     (org-with-point-at org-clock-default-task
 900       (org-clock-in))))
 901
 902 (defun bh/clock-in-parent-task ()
 903   "Move point to the parent (project) task if any and clock in"
 904   (let ((parent-task))
 905     (save-excursion
 906       (save-restriction
 907         (widen)
 908         (while (and (not parent-task) (org-up-heading-safe))
 909           (when (member (nth 2 (org-heading-components)) org-todo-keywords-1)
 910             (setq parent-task (point))))
 911         (if parent-task
 912             (org-with-point-at parent-task
 913               (org-clock-in))
 914           (when bh/keep-clock-running
 915             (bh/clock-in-default-task)))))))
 916
 917 (defvar bh/organization-task-id "e22cb8bf-07c7-408b-8f60-ff3aadac95e4")
 918
 919 (defun bh/clock-in-organization-task-as-default ()
 920   (interactive)
 921   (org-with-point-at (org-id-find bh/organization-task-id 'marker)
 922     (org-clock-in '(16))))
 923
 924 (defun bh/clock-out-maybe ()
 925   (when (and bh/keep-clock-running
 926              (not org-clock-clocking-in)
 927              (marker-buffer org-clock-default-task)
 928              (not org-clock-resolving-clocks-due-to-idleness))
 929     (bh/clock-in-parent-task)))
 930
 931 (add-hook 'org-clock-out-hook 'bh/clock-out-maybe 'append)
 932
 933 (require 'org-id)
 934 (defun bh/clock-in-task-by-id (id)
 935   "Clock in a task by id"
 936   (org-with-point-at (org-id-find id 'marker)
 937     (org-clock-in nil)))
 938
 939 (defun bh/clock-in-last-task (arg)
 940   "Clock in the interrupted task if there is one
 941 Skip the default task and get the next one.
 942 A prefix arg forces clock in of the default task."
 943   (interactive "p")
 944   (let ((clock-in-to-task
 945          (cond
 946           ((eq arg 4) org-clock-default-task)
 947           ((and (org-clock-is-active)
 948                 (equal org-clock-default-task (cadr org-clock-history)))
 949            (caddr org-clock-history))
 950           ((org-clock-is-active) (cadr org-clock-history))
 951           ((equal org-clock-default-task (car org-clock-history)) (cadr org-clock-history))
 952           (t (car org-clock-history)))))
 953     (widen)
 954     (org-with-point-at clock-in-to-task
 955       (org-clock-in nil))))
 956
 957
 958 ; allow for zero-width-space to be a break in regexp too
 959 (setcar org-emphasis-regexp-components " [:space:] \t('\"{")
 960 (setcar (nthcdr 1 org-emphasis-regexp-components) " [:space:]- \t.,:!?;'\")}\\")
 961 (org-set-emph-re 'org-emphasis-regexp-components org-emphasis-regexp-components)