1 #+PROPERTY: header-args:emacs-lisp :tangle don-configuration.el
4 # if for some reason, things get pear-shaped, we want to be able to
5 # enter the debugger by sending -USR2 to emacs
8 (setq debug-on-event 'siguser2)
10 * Initial startup stuff
11 ** Disable startup screen
12 #+BEGIN_SRC emacs-lisp
13 (setq inhibit-startup-screen t)
16 #+BEGIN_SRC emacs-lisp
17 ; (if (fboundp 'menu-bar-mode) (menu-bar-mode -1))
18 (if (fboundp 'tool-bar-mode) (tool-bar-mode -1))
19 (if (fboundp 'scroll-bar-mode) (scroll-bar-mode -1))
22 #+BEGIN_SRC emacs-lisp
23 (setq frame-resize-pixelwise t)
24 (add-to-list 'default-frame-alist '(fullscreen . maximixed))
27 ** package repositories and package manager
28 Borrowed from https://github.com/nilcons/emacs-use-package-fast/ to
29 load [[https://github.com/jwiegley/use-package/][use-package]] even faster
30 #+BEGIN_SRC emacs-lisp
31 (setq package-enable-at-startup nil)
32 (setq package--init-file-ensured t)
33 (setq package-archives '(("gnu" . "https://elpa.gnu.org/packages/")
34 ("melpa" . "https://melpa.org/packages/")
35 ("org" . "http://orgmode.org/elpa/") ))
37 (setq use-package-verbose (not (bound-and-true-p byte-compile-current-file))))
38 (mapc #'(lambda (add) (add-to-list 'load-path add))
41 (unless (package-installed-p 'use-package)
42 (package-refresh-contents)
43 (package-install 'use-package))
44 (let ((package-user-dir-real (file-truename package-user-dir)))
45 ;; The reverse is necessary, because outside we mapc
46 ;; add-to-list element-by-element, which reverses.
47 (nreverse (apply #'nconc
48 ;; Only keep package.el provided loadpaths.
49 (mapcar #'(lambda (path)
50 (if (string-prefix-p package-user-dir-real path)
55 (require 'use-package)
60 #+BEGIN_SRC emacs-lisp
63 :commands (paradox-upgrade-packages paradox-list-packages)
64 :config (setq paradox-execute-asynchronously t)
69 #+BEGIN_SRC emacs-lisp
70 (add-to-list 'load-path '"~/lib/emacs_el/")
71 (add-to-list 'load-path '"~/lib/emacs_el/magit-annex")
74 #+BEGIN_SRC emacs-lisp
75 ;; Set the custom file to /dev/null and don't bother to load it
76 (setq custom-file "/dev/null")
80 #+BEGIN_SRC emacs-lisp
81 ;; From http://www.emacswiki.org/emacs/LoadingLispFiles
82 ;; execute conditional code when loading libraries
83 (defmacro with-library (symbol &rest body)
84 `(when (require ,symbol nil t)
86 (put 'with-library 'lisp-indent-function 1)
90 ** Safe Local Variables
91 #+BEGIN_SRC emacs-lisp
92 (setq safe-local-variable-values
93 (quote ((auto-save-default)
95 (cperl-indent-level . 4)
97 (indent-tabs-mode . f)
101 #+BEGIN_SRC emacs-lisp
102 (setq global-mark-ring-max 128
106 (defun don/minibuffer-setup-hook ()
107 (setq gc-cons-threshold most-positive-fixnum))
109 (defun don/minibuffer-exit-hook ()
110 (setq gc-cons-threshold 1048576))
112 (add-hook 'minibuffer-setup-hook #'don/minibuffer-setup-hook)
113 (add-hook 'minibuffer-exit-hook #'don/minibuffer-exit-hook)
117 #+BEGIN_SRC emacs-lisp
118 (use-package hippie-exp
119 :bind* (("M-<SPC>" . hippie-expand))
123 #+BEGIN_SRC emacs-lisp
124 (use-package flyspell
126 :diminish flyspell-mode 🐝
128 (add-hook 'text-mode-hook 'turn-on-flyspell)
129 (add-hook 'c-mode-common-hook 'flyspell-prog-mode)
130 (add-hook 'cperl-mode-hook 'flyspell-prog-mode)
131 (add-hook 'tcl-mode-hook 'flyspell-prog-mode)
133 (setq ispell-program-name "ispell")
138 #+begin_src emacs-lisp :tangle yes
144 #+BEGIN_SRC emacs-lisp
149 #+BEGIN_SRC emacs-lisp
150 (use-package eyebrowse
152 :diminish eyebrowse-mode
153 :init (setq eyebrowse-keymap-prefix (kbd "C-c e"))
155 (setq eyebrowse-wrap-around t)
158 (defun my/eyebrowse-new-window-config ()
162 ;; start at 1 run till 0
163 (let ((j (mod (+ i 1) 10)))
164 (when (and (not done)
165 (not (eyebrowse--window-config-present-p j)))
166 (eyebrowse-switch-to-window-config j)
167 (call-interactively 'eyebrowse-rename-window-config2 j)
172 ;; I don't use latex-preview-pane
173 ;; (require 'latex-preview-pane)
174 ;; (defun my/close-latex-preview-pane-before-eyebrowse-switch ()
175 ;; ;; latex-preview-pane uses window-parameters which are
176 ;; ;; not preserved by eyebrowse, so we close the preview
177 ;; ;; pane before switching, it will be regenerated when we
178 ;; ;; edit the TeX file.
179 ;; (when (lpp/window-containing-preview)
180 ;; (delete-window (lpp/window-containing-preview))))
182 ;; (add-to-list 'eyebrowse-pre-window-switch-hook
183 ;; #'my/close-latex-preview-pane-before-eyebrowse-switch)
185 ;; (my/set-menu-key "[" #'my/eyebrowse-new-window-config)
186 ;; (my/set-menu-key ";" #'eyebrowse-prev-window-config)
187 ;; (my/set-menu-key "'" #'eyebrowse-next-window-config)
188 ;; (my/set-menu-key "]" #'eyebrowse-close-window-config)
189 ;; (my/set-menu-key "\\" #'eyebrowse-rename-window-config)
197 #+BEGIN_SRC emacs-lisp
198 (defun my/vsplit-last-buffer ()
199 "Split the window vertically and display the previous buffer."
201 (split-window-vertically)
203 (switch-to-next-buffer))
205 (defun my/hsplit-last-buffer ()
206 "Split the window horizontally and display the previous buffer."
208 (split-window-horizontally)
210 (switch-to-next-buffer))
212 (bind-key "C-x 2" 'my/vsplit-last-buffer)
213 (bind-key "C-x 3" 'my/hsplit-last-buffer)
215 (setq split-width-threshold 100)
216 (setq split-height-threshold 60)
218 (defun my/split-window-prefer-vertically (window)
219 "If there's only one window (excluding any possibly active
220 minibuffer), then split the current window horizontally."
221 (if (and (one-window-p t)
222 (not (active-minibuffer-window))
223 ( < (frame-width) (frame-height))
225 (let ((split-width-threshold nil))
226 (split-window-sensibly window))
227 (split-window-sensibly window)))
229 (setq split-window-preferred-function #'my/split-window-prefer-vertically)
230 (setq window-combination-resize t)
233 *** Compilation window
235 If there is no compilation window, open one at the bottom, spanning
236 the complete width of the frame. Otherwise, reuse existing window. In
237 the former case, if there was no error the window closes
240 #+BEGIN_SRC emacs-lisp
241 (add-to-list 'display-buffer-alist
242 `(,(rx bos "*compilation*" eos)
243 (display-buffer-reuse-window
244 display-buffer-in-side-window)
245 (reusable-frames . visible)
247 (window-height . 0.4)))
250 #+BEGIN_SRC emacs-lisp
251 (defun my/compilation-exit-autoclose (status code msg)
252 ;; If M-x compile exists with a 0
253 (when (and (eq status 'exit) (zerop code))
254 ;; and delete the *compilation* window
255 (let ((compilation-window (get-buffer-window (get-buffer "*compilation*"))))
256 (when (and (not (window-at-side-p compilation-window 'top))
257 (window-at-side-p compilation-window 'left)
258 (window-at-side-p compilation-window 'right))
259 (delete-window compilation-window))))
260 ;; Always return the anticipated result of compilation-exit-message-function
263 ;; Specify my function (maybe I should have done a lambda function)
264 (setq compilation-exit-message-function #'my/compilation-exit-autoclose)
267 If you change the variable ~compilation-scroll-output~ to a ~non-nil~
268 value, the compilation buffer scrolls automatically to follow the
269 output. If the value is ~first-error~, scrolling stops when the first
270 error appears, leaving point at that error. For any other non-nil
271 value, scrolling continues until there is no more output.
273 #+BEGIN_SRC emacs-lisp
274 (setq compilation-scroll-output 'first-error)
277 ** Mode line cleaning
279 #+BEGIN_SRC emacs-lisp
280 (use-package diminish
285 #+BEGIN_SRC emacs-lisp
292 #+BEGIN_SRC emacs-lisp
295 :bind (("C-c C-<SPC>" . avy-goto-word-or-subword-1)
296 ("C-c j j" . avy-goto-word-or-subword-1)
297 ("M-g g" . avy-goto-line))
298 :config (progn (setq avy-background t))
301 *** Ace-link (jumping to links)
302 #+BEGIN_SRC emacs-lisp
303 (use-package ace-link
305 ; bind o in most modes
306 :config (ace-link-setup-default))
308 *** Jumping through edit points (goto-chg)
309 #+BEGIN_SRC emacs-lisp
310 (use-package goto-chg
312 :bind (("C-c j ," . goto-last-change)
313 ("C-c j ." . goto-last-change-reverse))
316 *** Jumping to bookmarks (visible bookmarks, bm)
317 #+BEGIN_SRC emacs-lisp
320 :bind (("C-c j b ." . bm-next)
321 ("C-c j b ," . bm-previous)
322 ("C-c j b SPC" . bm-toggle)))
327 #+BEGIN_SRC emacs-lisp
328 (use-package yasnippet
330 :diminish yas-minor-mode
333 (setq yas-verbosity 1)
334 (define-key yas-minor-mode-map (kbd "<tab>") nil)
335 (define-key yas-minor-mode-map (kbd "TAB") nil)
336 (define-key yas-minor-mode-map (kbd "<backtab>") 'yas-expand)
337 (setq yas-snippet-dirs '("~/lib/emacs_el/snippets/"
338 "~/lib/emacs_el/yasnippet-snippets/snippets/"))
339 (add-to-list 'hippie-expand-try-functions-list
340 'yas-hippie-try-expand)
346 #+BEGIN_SRC emacs-lisp
347 (use-package auto-yasnippet
348 :bind (("H-w" . aya-create)
355 #+BEGIN_SRC emacs-lisp
357 (use-package tinyprocmail
358 :load-path "~/lib/emacs_el/tiny-tools/lisp/tiny"
359 :mode (".procmailrc" . turn-on-tinyprocmail-mode)
364 #+BEGIN_SRC emacs-lisp :tangle don-configuration.el
367 :bind (("C-x g" . magit-status)
368 ("C-x C-g" . magit-status))
370 ;; refine diffs always (hilight words)
371 (setq magit-diff-refine-hunk nil)
373 (use-package magit-annex
375 :load-path "~/lib/emacs_el/magit-annex/"
377 (use-package magit-vcsh
378 :ensure f ; currently not in melpa, so don't try to install
379 :load-path "~/lib/emacs_el/magit-vcsh/"
384 #+BEGIN_SRC emacs-lisp
385 (use-package cperl-mode
388 ;; Use c-mode for perl .xs files
389 (add-to-list 'auto-mode-alist '("\\.xs\\'" . c-mode))
390 (add-to-list 'auto-mode-alist '("\\.\\([pP][Llm]\\|al\\)\\'" . cperl-mode))
391 (add-to-list 'interpreter-mode-alist '("perl" . cperl-mode))
392 (add-to-list 'interpreter-mode-alist '("perl5" . cperl-mode))
393 (add-to-list 'interpreter-mode-alist '("miniperl" . cperl-mode))
396 cperl-auto-newline nil
397 cperl-auto-newline-after-colon nil
398 cperl-continued-statement-offset 4
399 cperl-brace-offset -1
400 cperl-continued-brace-offset 0
401 cperl-label-offset -4
402 cperl-highlight-variables-indiscriminately t
403 cperl-electric-lbrace-space nil
404 cperl-indent-parens-as-block nil
405 cperl-close-paren-offset -1
406 cperl-tab-always-indent t)
407 ;;(add-hook 'cperl-mode-hook (lambda () (cperl-set-style "PerlStyle")))
412 #+BEGIN_SRC emacs-lisp
413 (use-package markdown-mode
415 :mode (("\\.md\\'" . markdown-mode)
416 ("\\.mdwn\\'" . markdown-mode)
417 ("README\\.md\\'" . gfm-mode)
420 (setq markdown-enable-math t)
421 (setq markdown-follow-wiki-link-on-enter nil)
422 (bind-key "M-." #'markdown-jump markdown-mode-map)
423 (add-hook 'markdown-mode-hook #'flyspell-mode)
424 (add-hook 'markdown-mode-hook #'outline-minor-mode)
425 (bind-key "C-<tab>" #'outline-cycle markdown-mode-map)
430 #+BEGIN_SRC emacs-lisp
431 ; load sql-indent when sql is loaded
433 :mode (("\\.sql\\'" . sql-mode))
435 (require sql-indent))
438 #+BEGIN_SRC emacs-lisp
440 :commands ediff ediff3
443 ;; ediff configuration
444 ;; don't use the multi-window configuration
445 (setq ediff-window-setup-function 'ediff-setup-windows-plain)
448 ** VCL --editing varnish configuration files
449 #+BEGIN_SRC emacs-lisp
450 (use-package vcl-mode
457 #+BEGIN_SRC emacs-lisp
458 (defun malb/helm-omni (&rest arg)
459 ;; just in case someone decides to pass an argument, helm-omni won't fail.
461 (unless helm-source-buffers-list
462 (setq helm-source-buffers-list
463 (helm-make-source "Buffers" 'helm-source-buffers)))
467 (if (projectile-project-p)
468 '(helm-source-projectile-buffers-list
469 helm-source-buffers-list)
470 '(helm-source-buffers-list)) ;; list of all open buffers
472 `(((name . "Virtual Workspace")
473 (candidates . ,(--map (cons (eyebrowse-format-slot it) (car it))
474 (eyebrowse--get 'window-configs)))
475 (action . (lambda (candidate)
476 (eyebrowse-switch-to-window-config candidate)))))
478 (if (projectile-project-p)
479 '(helm-source-projectile-recentf-list
481 '(helm-source-recentf)) ;; all recent files
483 ;; always make some common files easily accessible
484 ;;'(((name . "Common Files")
485 ;; (candidates . malb/common-file-targets)
486 ;; (action . (("Open" . (lambda (x) (find-file (eval x))))))))
488 '(helm-source-files-in-current-dir
490 helm-source-bookmarks
491 helm-source-buffer-not-found ;; ask to create a buffer otherwise
493 "*Helm all the things*"))
497 :bind (("M-x" . helm-M-x)
498 ("C-x C-f" . helm-find-files)
499 ("C-x b" . helm-buffers-list) ; malb/helm-omni)
500 ("C-x C-b" . helm-buffers-list) ; malb/helm-omni)
501 ("C-c <SPC>" . helm-all-mark-rings))
503 (require 'helm-config)
504 (require 'helm-for-files)
505 (require 'helm-bookmark)
508 (define-key global-map [remap find-file] 'helm-find-files)
509 (define-key global-map [remap occur] 'helm-occur)
510 (define-key global-map [remap list-buffers] 'helm-buffers-list)
511 (define-key global-map [remap dabbrev-expand] 'helm-dabbrev)
512 (unless (boundp 'completion-in-region-function)
513 (define-key lisp-interaction-mode-map [remap completion-at-point] 'helm-lisp-completion-at-point)
514 (define-key emacs-lisp-mode-map [remap completion-at-point] 'helm-lisp-completion-at-point))
515 (add-hook 'kill-emacs-hook #'(lambda () (and (file-exists-p "$TMP") (delete-file "$TMP"))))
520 [[https://github.com/PythonNut/helm-flx][helm-flx]] implements intelligent helm fuzzy sorting, provided by [[https://github.com/lewang/flx][flx]].
522 #+BEGIN_SRC emacs-lisp
523 (use-package helm-flx
526 ;; these are helm configs, but they kind of fit here nicely
527 (setq helm-M-x-fuzzy-match t
528 helm-bookmark-show-location t
529 helm-buffers-fuzzy-matching t
530 helm-completion-in-region-fuzzy-match t
531 helm-file-cache-fuzzy-match t
532 helm-imenu-fuzzy-match t
533 helm-mode-fuzzy-match t
534 helm-locate-fuzzy-match nil
536 helm-recentf-fuzzy-match nil
537 helm-semantic-fuzzy-match t)
541 #+BEGIN_SRC emacs-lisp
543 ;;; stolen from https://github.com/malb/emacs.d/blob/master/malb.org
544 (defun malb/helm-swoop-pre-fill ()
545 (thing-at-point 'symbol))
546 (defvar malb/helm-swoop-ignore-major-mode "List of major modes to ignore for helm-swoop")
547 (setq malb/helm-swoop-ignore-major-mode '(dired-mode
548 paradox-menu-mode doc-view-mode pdf-view-mode
549 mu4e-headers-mode org-mode markdown-mode latex-mode
550 ein:notebook-multilang-mode))
552 (defun malb/swoop-or-search ()
554 (if (or (> (buffer-size) 1048576) ;; helm-swoop can be slow on big buffers
555 (memq major-mode malb/helm-swoop-ignore-major-mode))
559 (use-package helm-swoop
562 :bind (("C-c o" . helm-multi-swoop-org)
563 ("C-s" . malb/swoop-or-search)
564 ("C-M-s" . helm-multi-swoop-all))
567 (setq helm-swoop-pre-input-function #'malb/helm-swoop-pre-fill
568 helm-swoop-split-with-multiple-windows nil
569 helm-swoop-split-direction #'split-window-horizontally
570 helm-swoop-split-window-function 'helm-default-display-buffer
571 helm-swoop-speed-or-color t)
573 ;; https://emacs.stackexchange.com/questions/28790/helm-swoop-how-to-make-it-behave-more-like-isearch
574 (defun malb/helm-swoop-C-s ()
576 (if (boundp 'helm-swoop-pattern)
577 (if (equal helm-swoop-pattern "")
578 (previous-history-element 1)
582 (bind-key "C-S-s" #'helm-swoop-from-isearch isearch-mode-map)
583 (bind-key "C-S-s" #'helm-multi-swoop-all-from-helm-swoop helm-swoop-map)
584 (bind-key "C-r" #'helm-previous-line helm-swoop-map)
585 (bind-key "C-s" #'malb/helm-swoop-C-s helm-swoop-map)
586 (bind-key "C-r" #'helm-previous-line helm-multi-swoop-map)
587 (bind-key "C-s" #'malb/helm-swoop-C-s helm-multi-swoop-map))
592 #+BEGIN_SRC emacs-lisp
595 :config (setq helm-ag-base-command "ag --nocolor --nogroup"
596 helm-ag-command-option "--all-text"
597 helm-ag-insert-at-point 'symbol
598 helm-ag-fuzzy-match t
599 helm-ag-use-temp-buffer t
600 helm-ag-use-grep-ignore-list t
601 helm-ag-use-agignore t))
604 #+BEGIN_SRC emacs-lisp
605 (use-package helm-descbinds
607 :bind ("C-h b" . helm-descbinds)
608 :init (fset 'describe-bindings 'helm-descbinds))
612 #+BEGIN_SRC emacs-lisp
613 (use-package helm-c-yasnippet
615 :bind ("C-c h y" . helm-yas-complete)
617 (setq helm-yas-space-match-any-greedy t)))
620 #+BEGIN_SRC emacs-lisp
621 (use-package helm-org-rifle
624 (defun malb/helm-org-rifle-agenda-files (arg)
626 (let ((current-prefix-arg nil))
628 ((equal arg 4) (call-interactively #'helm-org-rifle-agenda-files nil))
629 ((equal arg 16) (helm-org-rifle-occur-agenda-files))
630 (t (helm-org-agenda-files-headings)))))))
633 This can be used to link things pretty quickly if necessary
634 #+BEGIN_SRC emacs-lisp
635 (use-package helm-google
637 :bind ("C-c h g" . helm-google)
639 (progn (add-to-list 'helm-google-actions
640 '("Copy URL" . (lambda (candidate)
642 (replace-regexp-in-string
643 "https://.*q=\\(.*\\)\&sa=.*"
649 (add-to-list 'helm-google-actions
650 '("Org Store Link" . (lambda (candidate)
651 (let ((title (car (split-string candidate "[\n]+")))
653 (replace-regexp-in-string
654 "https://.*q=\\(.*\\)\&sa=.*"
656 (push (list url title) org-stored-links))))
661 ** Projectile -- Project management
662 #+begin_src emacs-lisp
663 (use-package projectile
665 :bind (("<f5>" . projectile-compile-project)
666 ("<f6>" . next-error))
668 (use-package magit :ensure t)
669 (require 'helm-projectile)
672 (setq projectile-make-test-cmd "make check"
673 projectile-switch-project-action 'helm-projectile
674 projectile-mode-line '(:eval (format "»{%s}" (projectile-project-name))))
676 (projectile-global-mode)))
680 #+begin_src emacs-lisp
681 (use-package helm-projectile
684 (defvar malb/helm-source-file-not-found
685 (helm-build-dummy-source
690 'helm-projectile-sources-list
691 malb/helm-source-file-not-found t)
693 (helm-delete-action-from-source
694 "Grep in projects `C-s'"
695 helm-source-projectile-projects)
697 (helm-add-action-to-source
698 "Grep in projects `C-s'"
699 'helm-do-ag helm-source-projectile-projects 4)))
702 #+BEGIN_SRC emacs-lisp
705 :bind ("M-z" . avy-zap-up-to-char-dwim))
708 #+BEGIN_SRC emacs-lisp
710 :bind (("C-c 2" . my/hydra-orgmodes/body)
711 ("C-c @" . my/hydra-orgmodes/body)
712 ("C-c #" . my/hydra-outline/body)
713 ("C-c 3" . my/hydra-outline/body)
716 (defhydra my/hydra-orgmodes (:color blue :hint nil)
718 _n_: notes _c_: chaim _w_: wildman _o_: ool
719 _u_: uddin _s_: steve _r_: refile _f_: fh
720 _p_: read papers _R_: paper notes
725 ("n" (find-file "~/projects/org-notes/notes.org"))
726 ("c" (find-file "~/projects/org-notes/chaim.org"))
727 ("w" (find-file "~/projects/org-notes/wildman.org"))
728 ("u" (find-file "~/projects/org-notes/uddin.org"))
729 ("o" (find-file "~/projects/org-notes/ool.org"))
730 ("f" (find-file "~/projects/org-notes/fh.org"))
731 ("s" (find-file "~/projects/org-notes/sndservers.org"))
732 ("r" (find-file "~/projects/org-notes/refile.org"))
733 ("p" (find-file "~/projects/research/papers_to_read.org"))
734 ("R" (find-file "~/projects/research/paper_notes.org"))
735 ("h" (find-file "~/projects/org-notes/hpcbio.org"))
740 ;; from https://github.com/abo-abo/hydra/wiki/Emacs
741 (defhydra my/hydra-outline (:color pink :hint nil)
744 ^^^^^^------------------------------------------------------
745 _q_: sublevels _a_: all _u_: up
746 _t_: body _e_: entry _n_: next visible
747 _o_: other _i_: children _p_: previous visible
748 _c_: entry _k_: branches _f_: forward same level
749 _l_: leaves _s_: subtree _b_: backward same level
754 ("q" outline-hide-sublevels) ; Hide everything but the top-level headings
755 ("t" outline-hide-body) ; Hide everything but headings (all body lines)
756 ("o" outline-hide-other) ; Hide other branches
757 ("c" outline-hide-entry) ; Hide this entry's body
758 ("l" outline-hide-leaves) ; Hide body lines in this entry and sub-entries
759 ("d" outline-hide-subtree) ; Hide everything in this entry and sub-entries
761 ("a" outline-show-all) ; Show (expand) everything
762 ("e" outline-show-entry) ; Show this heading's body
763 ("i" outline-show-children) ; Show this heading's immediate child sub-headings
764 ("k" outline-show-branches) ; Show all sub-headings under this heading
765 ("s" outline-show-subtree) ; Show (expand) everything in this heading & below
767 ("u" outline-up-heading) ; Up
768 ("n" outline-next-visible-heading) ; Next
769 ("p" outline-previous-visible-heading) ; Previous
770 ("f" outline-forward-same-level) ; Forward - same level
771 ("b" outline-backward-same-level) ; Backward - same level
777 #+BEGIN_SRC emacs-lisp
780 (add-to-list 'tramp-methods '("vcsh"
781 (tramp-login-program "vcsh")
785 (tramp-remote-shell "/bin/sh")
786 (tramp-remote-shell-args
790 #+BEGIN_SRC emacs-lisp
794 (setq-default reftex-default-bibliography
795 '("~/projects/research/references.bib")))
798 #+BEGIN_SRC emacs-lisp
800 :config (setq bibtex-user-optional-fields
801 (quote (("annote" "Personal annotation (ignored)")
809 #+BEGIN_SRC emacs-lisp
814 ; (add-to-list 'TeX-style-path '"/home/don/lib/emacs_el/auctex/style")
815 ;; REFTEX (much enhanced management of cross-ref, labels, etc)
816 ;; http://www.strw.leidenuniv.nl/~dominik/Tools/reftex/
817 ; (autoload 'reftex-mode "reftex" "RefTeX Minor Mode" t)
818 ; (autoload 'turn-on-reftex "reftex" "RefTeX Minor Mode" nil)
819 ; (autoload 'reftex-citation "reftex-cite" "Make citation" nil)
820 ; (autoload 'reftex-index-phrase-mode "reftex-index" "Phrase mode" t)
821 (add-hook 'LaTeX-mode-hook 'turn-on-reftex) ; with AUCTeX LaTeX mode
822 (add-hook 'latex-mode-hook 'turn-on-reftex) ; with Emacs latex mode
823 (add-hook 'LaTeX-mode-hook 'outline-minor-mode) ; with AUCTeX LaTeX mode
824 (add-hook 'latex-mode-hook 'outline-minor-mode) ; with Emacs latex mode
826 (setq-default reftex-plug-into-AUCTeX t)
827 ;; support fake section headers
828 (setq TeX-outline-extra
834 ;; add font locking to the headers
835 (font-lock-add-keywords
837 '(("^%\\(chapter\\|\\(sub\\|subsub\\)?section\\|paragraph\\)"
838 0 'font-lock-keyword-face t)
839 ("^%chapter{\\(.*\\)}" 1 'font-latex-sectioning-1-face t)
840 ("^%section{\\(.*\\)}" 1 'font-latex-sectioning-2-face t)
841 ("^%subsection{\\(.*\\)}" 1 'font-latex-sectioning-3-face t)
842 ("^%subsubsection{\\(.*\\)}" 1 'font-latex-sectioning-4-face t)
843 ("^%paragraph{\\(.*\\)}" 1 'font-latex-sectioning-5-face t)))
845 ;; use smart quotes by default instead of `` and ''
846 ;; taken from http://kieranhealy.org/esk/kjhealy.html
847 (setq TeX-open-quote "“")
848 (setq TeX-close-quote "”")
850 ;; (TeX-add-style-hook
855 ;; (custom-set-variables
856 ;; '(font-latex-user-keyword-classes
859 ;; font-lock-function-name-face 2 (command 1 t))))
861 (setq-default TeX-parse-self t)
862 (setq-default TeX-auto-save t)
863 (setq-default TeX-master nil)
869 (if (boundp 'reftex-ref-style-alist)
871 'reftex-ref-style-alist
872 '("Cleveref" "cleveref"
873 (("\\cref" ?c) ("\\Cref" ?C) ("\\cpageref" ?d) ("\\Cpageref" ?D)))))
874 (reftex-ref-style-activate "Cleveref")
876 '("cref" TeX-arg-ref)
877 '("Cref" TeX-arg-ref)
878 '("cpageref" TeX-arg-ref)
879 '("Cpageref" TeX-arg-ref)))))
882 '(add-to-list 'LaTeX-fill-excluded-macros
885 (use-package font-latex
887 (setq font-latex-match-reference-keywords
909 (setq font-latex-fontify-script nil)
910 (setq font-latex-fontify-sectioning (quote color))
911 (setq font-latex-script-display (quote (nil)))
916 #+BEGIN_SRC emacs-lisp
920 :mode ("\\.R\\'" . ess-r-mode)
921 :bind (:map ess-mode-map
922 ("C-c C-R" . dla/ess-region-remote-eval))
924 (autoload 'ess-r-mode "ess-site" nil t)
925 (autoload 'R "ess-site" nil t)
927 ; actually load the rest of ess
929 (defun ess-change-directory (path)
930 "Set the current working directory to PATH for both *R* and Emacs."
931 (interactive "Directory to change to: ")
933 (when (file-exists-p path)
934 (ess-command (concat "setwd(\"" path "\")\n"))
935 ;; use file-name-as-directory to ensure it has trailing /
936 (setq default-directory (file-name-as-directory path))))
937 (add-hook 'ess-mode-hook 'flyspell-prog-mode)
938 ;; outlining support for ess modes
943 (setq outline-regexp "\\(^#\\{4,5\\} \\)\\|\\(^[a-zA-Z0-9_\.]+ ?<- ?function\\)")
944 (defun outline-level ()
945 (cond ((looking-at "^##### ") 1)
946 ((looking-at "^#### ") 2)
947 ((looking-at "^[a-zA-Z0-9_\.]+ ?<- ?function(.*{") 3)
950 (defun dla/ess-region-remote-eval (start end)
951 "Evaluate region in a remote ESS instance"
953 (shell-command-on-region start end "eval_r" (get-buffer-create "***essregionremoteeval***"))
954 kill-buffer "***essregionremoteeval***")
955 ;; Don't restore history or save workspace image
956 '(inferior-R-args "--no-restore-history --no-save")
961 From http://julien.danjou.info/projects/emacs-packages#rainbow-mode, this colorizes color strings
963 #+BEGIN_SRC emacs-lisp
964 (use-package rainbow-mode
965 ;; add ess to the x major mode
966 :config (add-to-list 'rainbow-x-colors-major-mode-list 'ESS[S])
967 (add-to-list 'rainbow-x-colors-major-mode-list 'ESS[R])
972 #+BEGIN_SRC emacs-lisp
973 (use-package polymode
976 (use-package poly-noweb)
977 (use-package poly-markdown)
978 :mode ("\\.Snw" . poly-noweb+r-mode)
979 :mode ("\\.Rnw" . poly-noweb+r-mode)
980 :mode ("\\.Rmd" . poly-markdown+r-mode)
986 #+BEGIN_SRC emacs-lisp
987 (use-package outline-magic)
990 #+BEGIN_SRC emacs-lisp
991 ;; change the outline mode prefix from C-c @ to C-c C-2
992 (setq outline-minor-mode-prefix "C-c C-2")
993 ;;(add-hook 'outline-minor-mode-hook
994 ;; (lambda () (local-set-key (kbd "C-c C-2")
995 ;; outline-mode-prefix-map)))
999 #+BEGIN_SRC emacs-lisp
1000 (use-package writeroom-mode
1002 (defun my/writing-mode ()
1003 "Start my writing mode; enable visual-line-mode and auto-fill-mode"
1008 (visual-line-mode -1)
1010 (visual-fill-column-mode -1)
1012 (visual-line-mode 1)
1014 (visual-fill-column-mode 1)
1019 ** GhostText/Atomic Chrome
1020 #+BEGIN_SRC emacs-lisp
1021 (use-package atomic-chrome
1023 (ignore-errors (atomic-chrome-start-server))
1024 (setq atomic-chrome-buffer-open-style 'full)
1029 :ID: 6fcf218b-a762-4c37-9339-a8202ddeb544
1031 [[https://github.com/magnars/multiple-cursors.el][Multiple Cursors]]
1032 #+BEGIN_SRC emacs-lisp
1033 (use-package multiple-cursors
1034 :bind* (("C-;" . mc/mark-all-dwim)
1035 ("C-<" . mc/mark-previous-like-this)
1036 ("C->" . mc/mark-next-like-this)
1037 ("C-S-c C-S-c" . mc/edit-lines))
1041 #+BEGIN_SRC emacs-lisp
1042 (use-package web-mode
1044 (add-to-list 'auto-mode-alist '("\\.tmpl\\'" . web-mode))
1045 (setq web-mode-enable-engine-detection t)
1046 (setq web-mode-engines-alist
1047 '(("template-toolkit" . "\\.tmpl\\'")))
1050 ** Spamassassin Mode
1051 #+BEGIN_SRC emacs-lisp
1052 (use-package spamassassin-mode
1053 :commands spamassassin-mode
1058 #+BEGIN_SRC emacs-lisp
1059 (use-package password-store
1061 :commands password-store-edit password-store-generate
1065 #+BEGIN_SRC emacs-lisp
1069 ;; fix up css mode to not be silly
1070 ;; from http://www.stokebloke.com/wordpress/2008/03/21/css-mode-indent-buffer-fix/
1071 (setq cssm-indent-level 4)
1072 (setq cssm-newline-before-closing-bracket t)
1073 (setq cssm-indent-function #'cssm-c-style-indenter)
1074 (setq cssm-mirror-mode nil))
1077 #+BEGIN_SRC emacs-lisp
1079 :diminish abbrev-mode
1081 ;; load abbreviations from
1082 (setq abbrev-file-name
1083 "~/.emacs_abbrev_def")
1085 ;; read the abbrev file if it exists
1086 (if (file-exists-p abbrev-file-name)
1087 (quietly-read-abbrev-file))
1089 ;; for now, use abbrev mode everywhere
1090 (setq default-abbrev-mode t))
1096 #+BEGIN_SRC emacs-lisp
1097 (use-package message
1099 :diminish (message "✉")
1100 :mode ("muttng-[a-z0-9]+-[0-9]+-" . message-mode)
1101 :mode ("mutt-[a-z0-9]+-[0-9]+-" . message-mode)
1102 :hook 'my/message-mode-settings
1103 :hook 'turn-on-flyspell
1104 :bind (:map message-mode-map
1105 ("C-c C-a" . my/post-attach-file))
1106 :delight (message-mode "✉")
1108 (defun my/message-mode-settings ()
1109 (font-lock-add-keywords nil
1110 '(("^[ \t]*>[ \t]*>[ \t]*>.*$"
1111 (0 'message-multiply-quoted-text-face))
1112 ("^[ \t]*>[ \t]*>.*$"
1113 (0 'message-double-quoted-text-face))))
1116 (defun my/post-attach-file ()
1117 "Prompt for an attachment."
1119 (let ((file (read-file-name "Attach file: " nil nil t nil)))
1120 (my/header-attach-file file "")))
1122 (defun my/header-attach-file (file description)
1123 "Attach a FILE to the current message (works with Mutt).
1124 Argument DESCRIPTION MIME description."
1125 (interactive "fAttach file: \nsDescription: ")
1126 (when (> (length file) 0)
1131 (goto-char (point-min))
1132 (search-forward-regexp "^$")
1133 (insert (concat "Attach: " (replace-regexp-in-string "\\([[:space:]\\]\\)" "\\\\\\1" (file-truename file)) " "
1135 (message (concat "Attached '" file "'."))
1136 (setq post-has-attachment t))))))
1138 (setq mail-yank-prefix "> ")
1142 #+BEGIN_SRC emacs-lisp
1143 (use-package muttrc-mode
1150 ** Reverting buffers
1151 #+BEGIN_SRC emacs-lisp
1152 (use-package autorevert
1153 :diminish auto-revert-mode
1155 (setq global-auto-revert-non-file-buffers t
1156 global-auto-revert-ignore-modes '(pdf-view-mode)
1157 auto-revert-verbose nil)
1158 (global-auto-revert-mode 1))
1161 ** Use-package and load things
1162 #+BEGIN_SRC emacs-lisp
1165 :delight (org-mode "ø")
1166 :mode ("\\.\\(org\\|org_archive\\|txt\\)\\'" . org-mode)
1167 :bind (("C-c l" . org-store-link)
1168 ("C-c a" . org-agenda)
1169 ("C-c b" . org-iswitchb))
1171 ** Agenda Configuration
1172 #+BEGIN_SRC emacs-lisp
1174 (setq-default org-log-done 'time)
1175 (setq-default org-agenda-ndays 5)
1177 ;; agenda configuration
1178 ;; Do not dim blocked tasks
1179 (setq org-agenda-dim-blocked-tasks nil)
1180 (setq org-agenda-inhibit-startup t)
1181 (setq org-agenda-use-tag-inheritance nil)
1183 ;; Compact the block agenda view
1184 (setq org-agenda-compact-blocks t)
1186 ;; Custom agenda command definitions
1187 (setq org-agenda-custom-commands
1188 (quote (("N" "Notes" tags "NOTE"
1189 ((org-agenda-overriding-header "Notes")
1190 (org-tags-match-list-sublevels t)))
1191 ("h" "Habits" tags-todo "STYLE=\"habit\""
1192 ((org-agenda-overriding-header "Habits")
1193 (org-agenda-sorting-strategy
1194 '(todo-state-down effort-up category-keep))))
1198 ((org-agenda-overriding-header "Tasks to Refile")
1199 (org-tags-match-list-sublevels nil)))
1200 (tags-todo "-CANCELLED/!"
1201 ((org-agenda-overriding-header "Stuck Projects")
1202 (org-agenda-skip-function 'bh/skip-non-stuck-projects)
1203 (org-agenda-sorting-strategy
1205 (tags-todo "-HOLD-CANCELLED/!"
1206 ((org-agenda-overriding-header "Projects")
1207 (org-agenda-skip-function 'bh/skip-non-projects)
1208 (org-tags-match-list-sublevels 'indented)
1209 (org-agenda-sorting-strategy
1211 (tags-todo "-CANCELLED/!NEXT"
1212 ((org-agenda-overriding-header (concat "Project Next Tasks"
1213 (if bh/hide-scheduled-and-waiting-next-tasks
1215 " (including WAITING and SCHEDULED tasks)")))
1216 (org-agenda-skip-function 'bh/skip-projects-and-habits-and-single-tasks)
1217 (org-tags-match-list-sublevels t)
1218 (org-agenda-todo-ignore-scheduled bh/hide-scheduled-and-waiting-next-tasks)
1219 (org-agenda-todo-ignore-deadlines bh/hide-scheduled-and-waiting-next-tasks)
1220 (org-agenda-todo-ignore-with-date bh/hide-scheduled-and-waiting-next-tasks)
1221 (org-agenda-sorting-strategy
1222 '(todo-state-down effort-up category-keep))))
1223 (tags-todo "-REFILE-CANCELLED-WAITING-HOLD/!"
1224 ((org-agenda-overriding-header (concat "Project Subtasks"
1225 (if bh/hide-scheduled-and-waiting-next-tasks
1227 " (including WAITING and SCHEDULED tasks)")))
1228 (org-agenda-skip-function 'bh/skip-non-project-tasks)
1229 (org-agenda-todo-ignore-scheduled bh/hide-scheduled-and-waiting-next-tasks)
1230 (org-agenda-todo-ignore-deadlines bh/hide-scheduled-and-waiting-next-tasks)
1231 (org-agenda-todo-ignore-with-date bh/hide-scheduled-and-waiting-next-tasks)
1232 (org-agenda-sorting-strategy
1234 (tags-todo "-REFILE-CANCELLED-WAITING-HOLD/!"
1235 ((org-agenda-overriding-header (concat "Standalone Tasks"
1236 (if bh/hide-scheduled-and-waiting-next-tasks
1238 " (including WAITING and SCHEDULED tasks)")))
1239 (org-agenda-skip-function 'bh/skip-project-tasks)
1240 (org-agenda-todo-ignore-scheduled bh/hide-scheduled-and-waiting-next-tasks)
1241 (org-agenda-todo-ignore-deadlines bh/hide-scheduled-and-waiting-next-tasks)
1242 (org-agenda-todo-ignore-with-date bh/hide-scheduled-and-waiting-next-tasks)
1243 (org-agenda-sorting-strategy
1245 (tags-todo "-CANCELLED+WAITING|HOLD/!"
1246 ((org-agenda-overriding-header "Waiting and Postponed Tasks")
1247 (org-agenda-skip-function 'bh/skip-stuck-projects)
1248 (org-tags-match-list-sublevels nil)
1249 (org-agenda-todo-ignore-scheduled t)
1250 (org-agenda-todo-ignore-deadlines t)))
1252 ((org-agenda-overriding-header "Tasks to Archive")
1253 (org-agenda-skip-function 'bh/skip-non-archivable-tasks)
1254 (org-tags-match-list-sublevels nil))))
1257 ; org mode agenda files
1258 (setq org-agenda-files
1259 (quote ("~/projects/org-notes/debbugs.org"
1260 "~/projects/org-notes/notes.org"
1261 "~/projects/org-notes/holidays.org"
1262 "~/projects/org-notes/refile.org"
1263 "~/projects/org-notes/diary.org"
1264 "~/projects/org-notes/ool.org"
1265 "~/projects/org-notes/sndservers.org"
1266 "~/projects/org-notes/chaim.org"
1267 "~/projects/org-notes/wildman.org"
1268 "~/projects/org-notes/uddin.org"
1269 "~/projects/org-notes/reviews.org"
1270 "~/org-mode/from-mobile.org"
1271 "~/projects/org-notes/fh.org")))
1273 (set-register ?n (cons 'file "~/projects/org-notes/notes.org"))
1274 (set-register ?r (cons 'file "~/projects/org-notes/refile.org"))
1275 (set-register ?o (cons 'file "~/projects/org-notes/ool.org"))
1276 (set-register ?s (cons 'file "~/projects/org-notes/sndservers.org"))
1277 (set-register ?c (cons 'file "~/projects/org-notes/chaim.org"))
1278 (set-register ?w (cons 'file "~/projects/org-notes/wildman.org"))
1279 (set-register ?u (cons 'file "~/projects/org-notes/uddin.org"))
1280 (set-register ?R (cons 'file "~/projects/reviews/reviews.org"))
1281 (set-register ?d (cons 'file "~/projects/org-notes/diary.org"))
1282 ; from https://emacs.stackexchange.com/questions/909/how-can-i-have-an-agenda-timeline-view-of-multiple-files
1283 (defun org-agenda-timeline-all (&optional arg)
1286 (dolist (org-agenda-file org-agenda-files)
1287 (insert-file-contents org-agenda-file nil)
1288 (goto-char (point-max))
1290 (write-file "/tmp/timeline.org")
1291 (org-agenda arg "L")))
1292 (define-key org-mode-map (kbd "C-c t") 'org-agenda-timeline-all)
1296 #+BEGIN_SRC emacs-lisp
1297 (setq org-global-properties '(("Effort_ALL 0 0:10 0:30 1:00 2:00 3:00 4:00 5:00 6:00 7:00")))
1298 (setq org-columns-default-format "%40ITEM(Task) %6Effort{:} %CLOCKSUM %PRIORITY %TODO %13SCHEDULED %13DEADLINE %TAGS")
1300 (setq org-default-notes-file "~/projects/org-notes/notes.org")
1301 (setq org-id-link-to-org-use-id 'use-existing)
1303 ** Capture Templates
1304 #+BEGIN_SRC emacs-lisp
1305 (setq org-capture-templates ;; mail-specific note template, identified by "m"
1306 `(("m" "Mail" entry (file "~/projects/org-notes/refile.org")
1307 "* %?\n\n Source: %u, [[%:link][%:description]]\n %:initial")
1308 ("t" "todo" entry (file "~/projects/org-notes/refile.org")
1309 "* TODO %?\n :PROPERTIES:\n :END:\n :LOGBOOK:\n :END:\n%U\n%a\n" :clock-in t :clock-resume t)
1310 ("r" "respond" entry (file "~/projects/org-notes/refile.org")
1311 "* NEXT Respond to %:from on %:subject\nSCHEDULED: %t\n%U\n%a\n" :clock-in t :clock-resume t :immediate-finish t)
1312 ("n" "note" entry (file "~/projects/org-notes/refile.org")
1313 "* %? :NOTE:\n%U\n%a\n" :clock-in t :clock-resume t)
1314 ("s" "schedule" entry (file "~/projects/org-notes/refile.org")
1315 "* %? :cal:\n%^{scheduled:}t\n%U\n%a\n" :clock-in t :clock-resume t)
1316 ("j" "Journal" entry (file+datetree "~/projects/org-notes/diary.org")
1317 "* %?\n%U\n" :clock-in t :clock-resume t)
1318 ("w" "org-protocol" entry (file "~/projects/org-notes/refile.org")
1319 "* TODO Review %c\n%U\n" :immediate-finish t)
1320 ("M" "Meeting" entry (file "~/projects/org-notes/refile.org")
1321 "* MEETING with %? :MEETING:\n%U" :clock-in t :clock-resume t)
1322 ("S" "Seminar" entry (file "~/projects/org-notes/refile.org")
1323 "* SEMINAR notes %? :SEMINAR:\n%U" :clock-in t :clock-resume t)
1324 ("P" "Paper to read" entry (file+headline "~/projects/research/papers_to_read.org" "Refile")
1325 "* TODO Get/Read %? \n%U" :clock-in t :clock-resume t)
1326 ("p" "Phone call" entry (file "~/projects/org-notes/refile.org")
1327 "* PHONE %? :PHONE:\n%U" :clock-in t :clock-resume t)
1328 ("J" "job" entry (file+olp "~/projects/org-notes/notes.org"
1330 ,(format-time-string "Positions %Y"))
1331 "* TODO Apply for %? :job:\nSCHEDULED: <%<%Y-%m-%d>>\n%U\n%x\n" :clock-in t :clock-resume t)
1332 ("h" "Habit" entry (file "~/projects/org-notes/refile.org")
1333 "* NEXT %?\n%U\n%a\nSCHEDULED: %(format-time-string \"<%Y-%m-%d .+1d/3d>\")\n:PROPERTIES:\n:STYLE: habit\n:REPEAT_TO_STATE: NEXT\n:END:\n%a\n")
1337 ;; Remove empty LOGBOOK drawers on clock out
1338 (defun bh/remove-empty-drawer-on-clock-out ()
1341 (beginning-of-line 0)
1342 (org-remove-empty-drawer-at (point))))
1344 (defun my/org-add-id ()
1347 (if (org-current-level)
1356 ** Org mode key bindings
1357 #+BEGIN_SRC emacs-lisp
1358 ;; org mode configuration from http://doc.norang.ca/org-mode.html
1359 ;; Custom Key Bindings
1360 :bind* (("<f9> a" . org-agenda)
1361 ("<f9> I" . bh/punch-in)
1362 ("<f9> O" . bh/punch-out)
1363 ("<f9> SPC" . bh/clock-in-last-task)
1364 ("<f12>" . org-agenda)
1365 ;; ("<f5>" . bh/org-todo)
1366 ("<S-f5>" . bh/widen)
1367 ("<f7>" . bh/set-truncate-lines)
1368 ("<f8>" . org-cycle-agenda-files)
1369 ("<f9> <f9>" . bh/show-org-agenda)
1371 ("<f9> c" . calendar)
1372 ("<f9> f" . boxquote-insert-file)
1373 ("<f9> h" . bh/hide-other)
1374 ("<f9> n" . bh/toggle-next-task-display)
1377 ("<f9> o" . bh/make-org-scratch)
1379 ("<f9> r" . boxquote-region)
1380 ("<f9> s" . bh/switch-to-scratch)
1382 ("<f9> t" . bh/insert-inactive-timestamp)
1383 ("<f9> T" . bh/toggle-insert-inactive-timestamp)
1385 ("<f9> v" . visible-mode)
1386 ("<f9> l" . org-toggle-link-display)
1387 ("<f9> SPC" . bh/clock-in-last-task)
1388 ("C-<f9>" . previous-buffer)
1389 ("M-<f9>" . org-toggle-inline-images)
1390 ("C-x n r" . narrow-to-region)
1391 ("C-<f10>" . next-buffer)
1392 ("<f11>" . org-clock-goto)
1393 ("C-<f11>" . org-clock-in)
1394 ("C-s-<f12>" . bh/save-then-publish)
1395 ("C-c c" . org-capture))
1398 ** Utility Functions
1399 #+BEGIN_SRC emacs-lisp
1400 (defun bh/hide-other ()
1403 (org-back-to-heading 'invisible-ok)
1409 (defun bh/set-truncate-lines ()
1410 "Toggle value of truncate-lines and refresh window display."
1412 (setq truncate-lines (not truncate-lines))
1413 ;; now refresh window display (an idiom from simple.el):
1415 (set-window-start (selected-window)
1416 (window-start (selected-window)))))
1418 (defun bh/make-org-scratch ()
1420 (find-file "/tmp/publish/scratch.org")
1421 (gnus-make-directory "/tmp/publish"))
1423 (defun bh/switch-to-scratch ()
1425 (switch-to-buffer "*scratch*"))
1427 (setq org-use-fast-todo-selection t)
1428 (setq org-treat-S-cursor-todo-selection-as-state-change nil)
1430 ; create function to create headlines in file. This comes from
1431 ; http://stackoverflow.com/questions/13340616/assign-ids-to-every-entry-in-org-mode
1432 (defun my/org-add-ids-to-headlines-in-file ()
1433 "Add ID properties to all headlines in the current file which
1434 do not already have one."
1436 (org-map-entries 'org-id-get-create))
1437 (defun dla/org-update-ids-to-headlines-in-file ()
1438 "Add or replace ID properties to all headlines in the current file
1439 (or narrowed region)."
1441 (org-map-entries '(lambda () (org-id-get-create t))))
1442 ; if we wanted to do this to every buffer, do the following:
1443 ; (add-hook 'org-mode-hook
1445 ; (add-hook 'before-save-hook 'my/org-add-ids-to-headlines-in-file nil 'local)))
1448 #+BEGIN_SRC emacs-lisp
1449 (setq org-todo-keywords
1450 (quote ((sequence "TODO(t)" "NEXT(n)" "|" "DONE(d)")
1451 (sequence "WAITING(w@/!)" "HOLD(h@/!)" "|" "CANCELLED(c@/!)" "PHONE" "MEETING"))))
1453 (setq org-todo-keyword-faces
1454 (quote (("TODO" :foreground "red" :weight bold)
1455 ("NEXT" :foreground "blue" :weight bold)
1456 ("DONE" :foreground "forest green" :weight bold)
1457 ("WAITING" :foreground "orange" :weight bold)
1458 ("HOLD" :foreground "magenta" :weight bold)
1459 ("CANCELLED" :foreground "forest green" :weight bold)
1460 ("MEETING" :foreground "forest green" :weight bold)
1461 ("PHONE" :foreground "forest green" :weight bold))))
1463 (setq org-todo-state-tags-triggers
1464 (quote (("CANCELLED" ("CANCELLED" . t))
1465 ("WAITING" ("WAITING" . t))
1466 ("HOLD" ("WAITING") ("HOLD" . t))
1467 (done ("WAITING") ("HOLD"))
1468 ("TODO" ("WAITING") ("CANCELLED") ("HOLD"))
1469 ("NEXT" ("WAITING") ("CANCELLED") ("HOLD"))
1470 ("DONE" ("WAITING") ("CANCELLED") ("HOLD")))))
1474 ; (add-hook 'org-clock-out-hook 'bh/remove-empty-drawer-on-clock-out 'append)
1475 ; add ids on creation of nodes
1476 (add-hook 'org-capture-prepare-finalize-hook 'my/org-add-id)
1479 ; resolve clocks after 10 minutes of idle; use xprintidle
1480 ; (setq org-clock-idle-time 10)
1481 ; (setq org-clock-x11idle-program-name "xprintidle")
1483 ; this is from http://doc.norang.ca/org-mode.html#Capture
1484 ; use C-M-r for org mode capture
1485 (global-set-key (kbd "C-M-r") 'org-capture)
1487 ; Targets include this file and any file contributing to the agenda - up to 9 levels deep
1488 (setq org-refile-targets (quote ((nil :maxlevel . 9)
1489 (org-agenda-files :maxlevel . 9))))
1491 ; Use full outline paths for refile targets - we file directly with IDO
1492 (setq org-refile-use-outline-path t)
1494 ; Targets complete directly with IDO
1495 (setq org-outline-path-complete-in-steps nil)
1497 ; Allow refile to create parent tasks with confirmation
1498 (setq org-refile-allow-creating-parent-nodes (quote confirm))
1500 ; ; Use IDO for both buffer and file completion and ido-everywhere to t
1501 ; (setq org-completion-use-ido t)
1502 ; (setq ido-everywhere t)
1503 ; (setq ido-max-directory-size 100000)
1504 ; (ido-mode (quote both))
1505 ; ; Use the current window when visiting files and buffers with ido
1506 ; (setq ido-default-file-method 'selected-window)
1507 ; (setq ido-default-buffer-method 'selected-window)
1508 ; ; Use the current window for indirect buffer display
1509 ; (setq org-indirect-buffer-display 'current-window)
1512 ;;;; Refile settings
1513 ; Exclude DONE state tasks from refile targets
1514 (defun bh/verify-refile-target ()
1515 "Exclude todo keywords with a done state from refile targets"
1516 (not (member (nth 2 (org-heading-components)) org-done-keywords)))
1518 (setq org-refile-target-verify-function 'bh/verify-refile-target)
1520 ;; ensure that emacsclient will show just the note to be edited when invoked
1521 ;; from Mutt, and that it will shut down emacsclient once finished;
1522 ;; fallback to legacy behavior when not invoked via org-protocol.
1523 (require 'org-protocol)
1524 ; (add-hook 'org-capture-mode-hook 'delete-other-windows)
1525 (setq my-org-protocol-flag nil)
1526 (defadvice org-capture-finalize (after delete-frame-at-end activate)
1527 "Delete frame at remember finalization"
1528 (progn (if my-org-protocol-flag (delete-frame))
1529 (setq my-org-protocol-flag nil)))
1530 (defadvice org-capture-refile (around delete-frame-after-refile activate)
1531 "Delete frame at remember refile"
1532 (if my-org-protocol-flag
1534 (setq my-org-protocol-flag nil)
1539 (defadvice org-capture-kill (after delete-frame-at-end activate)
1540 "Delete frame at remember abort"
1541 (progn (if my-org-protocol-flag (delete-frame))
1542 (setq my-org-protocol-flag nil)))
1543 (defadvice org-protocol-capture (before set-org-protocol-flag activate)
1544 (setq my-org-protocol-flag t))
1546 (defadvice org-insert-todo-heading (after dla/create-id activate)
1551 (add-to-list 'org-modules 'org-habit)
1553 ; this comes from http://upsilon.cc/~zack/blog/posts/2010/02/integrating_Mutt_with_Org-mode/
1554 (defun open-mail-in-mutt (message)
1555 "Open a mail message in Mutt, using an external terminal.
1557 Message can be specified either by a path pointing inside a
1558 Maildir, or by Message-ID."
1559 (interactive "MPath or Message-ID: ")
1561 (format "faf xterm -e \"%s %s\""
1562 (substitute-in-file-name "$HOME/bin/mutt_open") message)))
1564 ;; add support for "mutt:ID" links
1565 (org-add-link-type "mutt" 'open-mail-in-mutt)
1567 (defun my-org-mode-setup ()
1568 ; (load-library "reftex")
1569 (and (buffer-file-name)
1570 (file-exists-p (buffer-file-name))
1572 ; (reftex-parse-all)
1573 (reftex-set-cite-format
1574 '((?b . "[[bib:%l][%l-bib]]")
1575 (?n . "[[notes:%l][%l-notes]]")
1577 (?h . "*** %t\n:PROPERTIES:\n:Custom_ID: %l\n:END:\n[[papers:%l][%l xoj]] [[papers-pdf:%l][pdf]]")))
1579 (define-key org-mode-map (kbd "C-c )") 'reftex-citation)
1580 (define-key org-mode-map (kbd "C-c [") 'reftex-citation)
1581 (define-key org-mode-map (kbd "C-c (") 'org-mode-reftex-search)
1582 (define-key org-mode-map (kbd "C-c 0") 'reftex-view-crossref)
1584 (add-hook 'org-mode-hook 'my-org-mode-setup)
1586 (defun org-mode-reftex-search ()
1588 (org-open-link-from-string (format "[[notes:%s]]" (first (reftex-citation t)))))
1590 (defun open-research-paper (bibtexkey)
1591 "Open a paper by bibtex key"
1592 (interactive "bibtex key: ")
1595 (substitute-in-file-name "$HOME/bin/bibtex_to_paper") bibtexkey)))
1596 (org-add-link-type "papers" 'open-research-paper)
1597 (defun open-research-paper-pdf (bibtexkey)
1598 "Open a paper pdf by bibtex key"
1599 (interactive "bibtex key: ")
1601 (format "%s -p evince_annot %s"
1602 (substitute-in-file-name "$HOME/bin/bibtex_to_paper") bibtexkey)))
1603 (org-add-link-type "papers-pdf" 'open-research-paper-pdf)
1605 (add-to-list 'org-link-abbrev-alist
1607 "~/projects/research/paper_notes.org::#%s"))
1609 ; I pretty much always want hiearchical checkboxes
1610 (setq org-hierachical-checkbox-statistics nil)
1612 ;; Add \begin{equation}\end{equation} templates to the org mode easy templates
1613 (add-to-list 'org-structure-template-alist
1614 '("E" "\\begin{equation}\n?\n\\end{equation}"))
1617 ;; http://www-public.it-sudparis.eu/~berger_o/weblog/2012/03/23/how-to-manage-and-export-bibliographic-notesrefs-in-org-mode/
1618 (defun my-rtcite-export-handler (path desc format)
1619 (message "my-rtcite-export-handler is called : path = %s, desc = %s, format = %s" path desc format)
1620 (let* ((search (when (string-match "::#?\\(.+\\)\\'" path)
1621 (match-string 1 path)))
1622 (path (substring path 0 (match-beginning 0))))
1623 (cond ((eq format 'latex)
1625 (equal 0 (search "rtcite:" desc)))
1626 (format "\\cite{%s}" search)
1627 (format "\\cite[%s]{%s}" desc search))))))
1629 (org-add-link-type "rtcite"
1631 'my-rtcite-export-handler)
1635 ** Org Mobile Configuration
1636 #+BEGIN_SRC emacs-lisp
1637 (setq-default org-mobile-directory "/linnode.donarmstrong.com:/sites/dav.donarmstrong.com/root/org/")
1638 (when (string= system-name "linnode")
1639 (setq-default org-mobile-directory "/sites/dav.donarmstrong.com/root/org/"))
1640 (setq-default org-directory "/home/don/org-mode/")
1641 (setq-default org-mobile-inbox-for-pull "/home/don/org-mode/from-mobile.org")
1645 #+BEGIN_SRC emacs-lisp
1646 ;; org mode ical export
1647 (setq org-icalendar-timezone "America/Los_Angeles")
1648 (setq org-icalendar-use-scheduled '(todo-start event-if-todo))
1649 ;; we already add the id manually
1650 (setq org-icalendar-store-UID t)
1653 ** General Org Babel Configuration
1654 #+BEGIN_SRC emacs-lisp
1655 ;; org babel support
1656 (org-babel-do-load-languages
1657 'org-babel-load-languages
1664 ;; use graphviz-dot for dot things
1665 (add-to-list 'org-src-lang-modes '("dot" . graphviz-dot))
1666 ;; org-babel-by-backend
1667 (defmacro org-babel-by-backend (&rest body)
1668 `(case (if (boundp 'backend)
1669 (org-export-backend-name backend)
1672 (defun my/fix-inline-images ()
1673 (when org-inline-image-overlays
1674 (org-redisplay-inline-images)))
1676 (add-hook 'org-babel-after-execute-hook
1677 'my/fix-inline-images)
1680 ** LaTeX configuration
1682 :ID: 7135ba17-6a50-4eed-84ca-b90afa5b12f8
1684 #+BEGIN_SRC emacs-lisp
1686 (add-to-list 'org-latex-classes
1688 "\\documentclass[11pt,oneside,article]{memoir}\n"
1689 ("\\section{%s}" . "\\section*{%s}")
1690 ("\\subsection{%s}" . "\\subsection*{%s}")
1691 ("\\subsubsection{%s}" . "\\subsubsection*{%s}")
1692 ("\\paragraph{%s}" . "\\paragraph*{%s}")
1693 ("\\subparagraph{%s}" . "\\subparagraph*{%s}")))
1695 (setq org-beamer-outline-frame-options "")
1696 (add-to-list 'org-latex-classes
1698 "\\documentclass[ignorenonframetext]{beamer}
1699 [NO-DEFAULT-PACKAGES]
1702 ("\\section{%s}" . "\\section*{%s}")
1703 ("\\subsection{%s}" . "\\subsection*{%s}")
1704 ("\\subsubsection{%s}" . "\\subsubsection*{%s}")
1705 ("\\paragraph{%s}" . "\\paragraph*{%s}")
1706 ("\\subparagraph{%s}" . "\\subparagraph*{%s}")))
1708 (add-to-list 'org-latex-classes
1710 "\\documentclass[11pt,oneside]{memoir}\n"
1711 ("\\chapter{%s}" . "\\chapter*{%s}")
1712 ("\\section{%s}" . "\\section*{%s}")
1713 ("\\subsection{%s}" . "\\subsection*{%s}")
1714 ("\\subsubsection{%s}" . "\\subsubsection*{%s}")))
1716 (add-to-list 'org-latex-classes
1718 "\\documentclass[11pt]{letter}
1719 [NO-DEFAULT-PACKAGES]
1722 ("\\section{%s}" . "\\section*{%s}")
1723 ("\\subsection{%s}" . "\\subsection*{%s}")
1724 ("\\subsubsection{%s}" . "\\subsubsection*{%s}")
1725 ("\\paragraph{%s}" . "\\paragraph*{%s}")
1726 ("\\subparagraph{%s}" . "\\subparagraph*{%s}")))
1728 (add-to-list 'org-latex-classes
1730 "\\documentclass{dlacv}
1731 [NO-DEFAULT-PACKAGES]
1734 ("\\section{%s}" . "\\section*{%s}")
1735 ("\\subsection{%s}" . "\\subsection*{%s}")
1736 ("\\subsubsection{%s}" . "\\subsubsection*{%s}")
1737 ("\\paragraph{%s}" . "\\paragraph*{%s}")
1738 ("\\subparagraph{%s}" . "\\subparagraph*{%s}")))
1741 (add-to-list 'org-latex-classes
1743 "\\documentclass{dlaresume}
1744 [NO-DEFAULT-PACKAGES]
1747 ("\\section{%s}" . "\\section*{%s}")
1748 ("\\subsection{%s}" . "\\subsection*{%s}")
1749 ("\\subsubsection{%s}" . "\\subsubsection*{%s}")
1750 ("\\paragraph{%s}" . "\\paragraph*{%s}")
1751 ("\\subparagraph{%s}" . "\\subparagraph*{%s}")))
1754 ;; Originally taken from Bruno Tavernier: http://thread.gmane.org/gmane.emacs.orgmode/31150/focus=31432
1755 ;; but adapted to use latexmk 4.22 or higher.
1756 (setq org-latex-pdf-process '("latexmk -f -pdflatex=xelatex -bibtex -use-make -pdf %f"))
1758 ;; Default packages included in /every/ tex file, latex, pdflatex or xelatex
1759 (setq org-latex-default-packages-alist
1761 ("" "unicode-math" t)
1763 (setq org-latex-packages-alist
1770 ("" "longtable" nil)
1773 ;; make equations larger
1774 (setq org-format-latex-options (plist-put org-format-latex-options :scale 2.0))
1776 (defun org-create-formula--latex-header ()
1777 "Return LaTeX header appropriate for previewing a LaTeX snippet."
1778 (let ((info (org-combine-plists (org-export--get-global-options
1779 (org-export-get-backend 'latex))
1780 (org-export--get-inbuffer-options
1781 (org-export-get-backend 'latex)))))
1782 (org-latex-guess-babel-language
1783 (org-latex-guess-inputenc
1784 (org-splice-latex-header
1785 org-format-latex-header
1786 org-latex-default-packages-alist
1788 (plist-get info :latex-header)))
1792 ; support ignoring headers in org mode export to latex
1793 ; from http://article.gmane.org/gmane.emacs.orgmode/67692
1794 (defadvice org-latex-headline (around my-latex-skip-headlines
1795 (headline contents info) activate)
1796 (if (member "ignoreheading" (org-element-property :tags headline))
1797 (setq ad-return-value contents)
1800 ;; keep latex logfiles
1802 (setq org-latex-remove-logfiles nil)
1804 ;; Resume clocking task when emacs is restarted
1805 (org-clock-persistence-insinuate)
1807 ;; Show lot of clocking history so it's easy to pick items off the C-F11 list
1808 (setq org-clock-history-length 23)
1809 ;; Resume clocking task on clock-in if the clock is open
1810 (setq org-clock-in-resume t)
1811 ;; Change tasks to NEXT when clocking in; this avoids clocking in when
1812 ;; there are things like PHONE calls
1813 (setq org-clock-in-switch-to-state 'bh/clock-in-to-next)
1814 ;; Separate drawers for clocking and logs
1815 (setq org-drawers (quote ("PROPERTIES" "LOGBOOK")))
1816 ;; Save clock data and state changes and notes in the LOGBOOK drawer
1817 (setq org-clock-into-drawer t)
1818 (setq org-log-into-drawer t)
1819 ;; Sometimes I change tasks I'm clocking quickly - this removes clocked tasks with 0:00 duration
1820 (setq org-clock-out-remove-zero-time-clocks t)
1821 ;; Clock out when moving task to a done state
1822 (setq org-clock-out-when-done t)
1823 ;; Save the running clock and all clock history when exiting Emacs, load it on startup
1824 (setq org-clock-persist t)
1825 ;; Do not prompt to resume an active clock
1826 (setq org-clock-persist-query-resume nil)
1827 ;; Enable auto clock resolution for finding open clocks
1828 (setq org-clock-auto-clock-resolution (quote when-no-clock-is-running))
1829 ;; Include current clocking task in clock reports
1830 (setq org-clock-report-include-clocking-task t)
1832 ;; the cache seems to be broken
1833 (setq org-element-use-cache nil)
1835 (defvar bh/keep-clock-running nil)
1837 (defun bh/is-task-p ()
1838 "Any task with a todo keyword and no subtask"
1842 (subtree-end (save-excursion (org-end-of-subtree t)))
1843 (is-a-task (member (nth 2 (org-heading-components)) org-todo-keywords-1)))
1846 (while (and (not has-subtask)
1847 (< (point) subtree-end)
1848 (re-search-forward "^\*+ " subtree-end t))
1849 (when (member (org-get-todo-state) org-todo-keywords-1)
1850 (setq has-subtask t))))
1851 (and is-a-task (not has-subtask)))))
1852 (defun bh/is-project-p ()
1853 "Any task with a todo keyword subtask"
1857 (subtree-end (save-excursion (org-end-of-subtree t)))
1858 (is-a-task (member (nth 2 (org-heading-components)) org-todo-keywords-1)))
1861 (while (and (not has-subtask)
1862 (< (point) subtree-end)
1863 (re-search-forward "^\*+ " subtree-end t))
1864 (when (member (org-get-todo-state) org-todo-keywords-1)
1865 (setq has-subtask t))))
1866 (and is-a-task has-subtask))))
1868 (defun bh/is-subproject-p ()
1869 "Any task which is a subtask of another project"
1870 (let ((is-subproject)
1871 (is-a-task (member (nth 2 (org-heading-components)) org-todo-keywords-1)))
1873 (while (and (not is-subproject) (org-up-heading-safe))
1874 (when (member (nth 2 (org-heading-components)) org-todo-keywords-1)
1875 (setq is-subproject t))))
1876 (and is-a-task is-subproject)))
1879 (defun bh/clock-in-to-next (kw)
1880 "Switch a task from TODO to NEXT when clocking in.
1881 Skips capture tasks, projects, and subprojects.
1882 Switch projects and subprojects from NEXT back to TODO"
1883 (when (not (and (boundp 'org-capture-mode) org-capture-mode))
1885 ((and (member (org-get-todo-state) (list "TODO"))
1888 ((and (member (org-get-todo-state) (list "NEXT"))
1892 (defun bh/punch-in (arg)
1893 "Start continuous clocking and set the default task to the
1894 selected task. If no task is selected set the Organization task
1895 as the default task."
1897 (setq bh/keep-clock-running t)
1898 (if (equal major-mode 'org-agenda-mode)
1900 ;; We're in the agenda
1902 (let* ((marker (org-get-at-bol 'org-hd-marker))
1903 (tags (org-with-point-at marker (org-get-tags-at))))
1904 (if (and (eq arg 4) tags)
1905 (org-agenda-clock-in '(16))
1906 (bh/clock-in-organization-task-as-default)))
1908 ;; We are not in the agenda
1912 ; Find the tags on the current task
1913 (if (and (equal major-mode 'org-mode) (not (org-before-first-heading-p)) (eq arg 4))
1914 (org-clock-in '(16))
1915 (bh/clock-in-organization-task-as-default)))))
1917 (defun bh/punch-out ()
1919 (setq bh/keep-clock-running nil)
1920 (when (org-clock-is-active)
1922 (org-agenda-remove-restriction-lock))
1924 (defun bh/clock-in-default-task ()
1926 (org-with-point-at org-clock-default-task
1929 (defun bh/clock-in-parent-task ()
1930 "Move point to the parent (project) task if any and clock in"
1931 (let ((parent-task))
1935 (while (and (not parent-task) (org-up-heading-safe))
1936 (when (member (nth 2 (org-heading-components)) org-todo-keywords-1)
1937 (setq parent-task (point))))
1939 (org-with-point-at parent-task
1941 (when bh/keep-clock-running
1942 (bh/clock-in-default-task)))))))
1944 (defvar bh/organization-task-id "e22cb8bf-07c7-408b-8f60-ff3aadac95e4")
1946 (defun bh/clock-in-organization-task-as-default ()
1948 (org-with-point-at (org-id-find bh/organization-task-id 'marker)
1949 (org-clock-in '(16))))
1951 (defun bh/clock-out-maybe ()
1952 (when (and bh/keep-clock-running
1953 (not org-clock-clocking-in)
1954 (marker-buffer org-clock-default-task)
1955 (not org-clock-resolving-clocks-due-to-idleness))
1956 (bh/clock-in-parent-task)))
1958 ; (add-hook 'org-clock-out-hook 'bh/clock-out-maybe 'append)
1961 (defun bh/clock-in-task-by-id (id)
1962 "Clock in a task by id"
1963 (org-with-point-at (org-id-find id 'marker)
1964 (org-clock-in nil)))
1966 (defun bh/clock-in-last-task (arg)
1967 "Clock in the interrupted task if there is one
1968 Skip the default task and get the next one.
1969 A prefix arg forces clock in of the default task."
1971 (let ((clock-in-to-task
1973 ((eq arg 4) org-clock-default-task)
1974 ((and (org-clock-is-active)
1975 (equal org-clock-default-task (cadr org-clock-history)))
1976 (caddr org-clock-history))
1977 ((org-clock-is-active) (cadr org-clock-history))
1978 ((equal org-clock-default-task (car org-clock-history)) (cadr org-clock-history))
1979 (t (car org-clock-history)))))
1981 (org-with-point-at clock-in-to-task
1982 (org-clock-in nil))))
1985 (defun org-export-to-ods ()
1987 (let ((csv-file "data.csv"))
1988 (org-table-export csv-file "orgtbl-to-csv")
1989 (org-odt-convert csv-file "ods" 'open)))
1991 ; allow for zero-width-space to be a break in regexp too
1992 ; (setcar org-emphasis-regexp-components " [:space:] \t('\"{")
1993 ; (setcar (nthcdr 1 org-emphasis-regexp-components) " [:space:]- \t.,:!?;'\")}\\")
1994 ; (org-set-emph-re 'org-emphasis-regexp-components org-emphasis-regexp-components)
1996 ;; support inserting screen shots
1997 (defun my/org-insert-screenshot ()
1998 "Take a screenshot into a time stamped unique-named file in the
1999 same directory as the org-buffer and insert a link to this file."
2001 (defvar my/org-insert-screenshot/filename)
2002 (setq my/org-insert-screenshot/filename
2004 "Screenshot to insert: "
2006 (concat (buffer-file-name) "_" (format-time-string "%Y%m%d_%H%M%S") ".png")
2009 (call-process "import" nil nil nil my/org-insert-screenshot/filename)
2010 (insert (concat "[[" my/org-insert-screenshot/filename "]]"))
2011 (org-display-inline-images))
2013 (defun my/fix-inline-images ()
2014 (when org-inline-image-overlays
2015 (org-redisplay-inline-images)))
2017 (add-hook 'org-babel-after-execute-hook 'my/fix-inline-images)
2019 ;; use xelatex to preview with imagemagick
2020 (add-to-list 'org-preview-latex-process-alist
2021 '(xelateximagemagick
2022 :programs ("xelatex" "convert")
2023 :description "pdf > png"
2024 :message "you need to install xelatex and imagemagick"
2026 :image-input-type "pdf"
2027 :image-output-type "png"
2028 :image-size-adjust (1.0 . 1.0)
2029 :latex-compiler ("xelatex -interaction nonstopmode -output-directory %o %f")
2030 :image-converter ("convert -density %D -trim -antialias %f -quality 100 %O"))
2032 ;; use xelatex by default
2033 (setq org-preview-latex-default-process 'xelateximagemagick)
2035 ; from http://orgmode.org/Changes.html
2036 (defun my/org-repair-property-drawers ()
2037 "Fix properties drawers in current buffer.
2038 Ignore non Org buffers."
2040 (when (eq major-mode 'org-mode)
2041 (org-with-wide-buffer
2042 (goto-char (point-min))
2043 (let ((case-fold-search t)
2044 (inline-re (and (featurep 'org-inlinetask)
2045 (concat (org-inlinetask-outline-regexp)
2049 (unless (and inline-re (org-looking-at-p inline-re))
2051 (let ((end (save-excursion (outline-next-heading) (point))))
2053 (when (org-looking-at-p org-planning-line-re) (forward-line))
2054 (when (and (< (point) end)
2055 (not (org-looking-at-p org-property-drawer-re))
2057 (and (re-search-forward org-property-drawer-re end t)
2058 (eq (org-element-type
2059 (save-match-data (org-element-at-point)))
2061 (insert (delete-and-extract-region
2063 (min (1+ (match-end 0)) end)))
2064 (unless (bolp) (insert "\n"))))))))))))
2068 #+BEGIN_SRC emacs-lisp
2072 (use-package calfw-org
2075 (use-package org-gcal
2077 :config '((if (file-readable-p "~/.hide/org_gcal.el")
2078 (load-file "~/.hide/org_gcal.el"))
2083 #+BEGIN_SRC emacs-lisp
2087 ;; Show notification 10 minutes before event
2088 (setq appt-message-warning-time 10)
2089 ;; Disable multiple reminders
2090 (setq appt-display-interval appt-message-warning-time)
2091 (setq appt-display-mode-line nil)
2093 ;; add automatic reminders for appointments
2094 (defun my/org-agenda-to-appt ()
2096 (setq appt-time-msg-list nil)
2097 (org-agenda-to-appt))
2098 ;; add reminders when starting emacs
2099 (my/org-agenda-to-appt)
2100 ;; when rebuilding the agenda
2101 (defadvice org-agenda-redo (after org-agenda-redo-add-appts)
2102 "Pressing `r' on the agenda will also add appointments."
2103 (my/org-agenda-to-appt)
2105 ;; when saving all org buffers
2106 (defadvice org-save-all-org-buffers (after org-save-all-org-buffers-add-appts)
2107 "Re-add appts after saving all org buffers"
2108 (my/org-agenda-to-appt))
2109 ;; Display appointments as a window manager notification
2110 (setq appt-disp-window-function 'my/appt-display)
2111 (setq appt-delete-window-function (lambda () t))
2113 (setq my/appt-notification-app (concat (getenv "HOME") "/bin/appt_notification"))
2115 (defun my/appt-display (min-to-app new-time msg)
2116 (if (atom min-to-app)
2117 (start-process "my/appt-notification-app" nil my/appt-notification-app min-to-app msg)
2118 (dolist (i (number-sequence 0 (1- (length min-to-app))))
2119 (start-process "my/appt-notification-app" nil my/appt-notification-app
2120 (nth i min-to-app) (nth i msg))))
2127 #+BEGIN_SRC emacs-lisp
2132 #+BEGIN_SRC emacs-lisp
2133 (global-unset-key "\M-g")
2134 (global-set-key (kbd "M-g l") 'goto-line)
2138 #+BEGIN_SRC emacs-lisp
2139 (use-package debian-changelog
2141 :mode "debian/changelog"
2143 (setq debian-changelog-mailing-address "don@debian.org")
2144 (setq debian-changelog-full-name "Don Armstrong"))
2146 * Misc (uncharacterized)
2147 #+BEGIN_SRC emacs-lisp
2148 (setq calendar-latitude 38.6)
2149 (setq calendar-longitude -121.5)
2150 (setq case-fold-search t)
2151 (setq confirm-kill-emacs (quote y-or-n-p))
2152 (setq cperl-lazy-help-time nil)
2154 (setq display-time-24hr-format t)
2155 (setq display-time-day-and-date t)
2156 (display-time-mode 1)
2157 (global-font-lock-mode 1)
2159 (setq log-edit-keep-buffer t)
2160 (setq mail-user-agent (quote sendmail-user-agent))
2161 (setq markdown-enable-math t)
2162 (setq markdown-follow-wiki-link-on-enter nil)
2163 (setq mutt-alias-file-list (quote ("~/.mutt/aliases" "~/.mail_aliases")))
2164 (setq ps-footer-font-size (quote (8 . 10)))
2165 (setq ps-header-font-size (quote (8 . 10)))
2166 (setq ps-header-title-font-size (quote (10 . 10)))
2167 (setq ps-line-number-color "blue")
2168 (setq ps-print-footer t)
2169 (setq ps-print-footer-frame nil)
2170 (setq ps-print-only-one-header t)
2171 (setq sentence-end "[.?!][]\"')]*\\($\\| \\| \\)[
2173 (setq sentence-end-double-space nil)
2174 ; enable matching parenthesis
2177 (setq user-mail-address "don@donarmstrong.com")
2178 (setq vc-delete-logbuf-window nil)
2179 (setq vc-follow-symlinks t)
2181 ;; use git before SVN; use CVS earlier, because I have CVS
2182 ;; repositories inside of git directories
2183 (setq vc-handled-backends (quote (CVS Git RCS SVN SCCS Bzr Hg Mtn Arch)))
2185 ;; switch back to the old primary selection method
2186 (setq x-select-enable-clipboard nil)
2187 (setq x-select-enable-primary t)
2188 ; (setq mouse-drag-copy-region t)
2190 (fset 'perl-mode 'cperl-mode)
2191 ;;(load-file "cperl-mode.el")
2193 ;; tramp configuration
2194 (setq tramp-use-ssh-controlmaster-options nil)
2196 (setq-default c-indent-level 4)
2197 (setq-default c-brace-imaginary-offset 0)
2198 (setq-default c-brace-offset -4)
2199 (setq-default c-argdecl-indent 4)
2200 (setq-default c-label-offset -4)
2201 (setq-default c-continued-statement-offset 4)
2203 (setq-default indent-tabs-mode nil)
2204 (setq-default tab-width 4)
2207 ;; (autoload 'php-mode "php-mode" "PHP editing mode" t)
2208 ;; (add-to-list 'auto-mode-alist '("\\.php3?\\'" . php-mode))
2209 ;; (add-to-list 'auto-mode-alist '("\\.phtml?\\'" . php-mode))
2210 ;; (add-to-list 'auto-mode-alist '("\\.php?\\'" . php-mode))
2211 ;; (add-to-list 'auto-mode-alist '("\\.php4?\\'" . php-mode))
2214 (defun insert-date ()
2215 "Insert date at point."
2217 (insert (format-time-string "%A, %B %e, %Y %k:%M:%S %Z")))
2218 (global-set-key "\C-[d" 'insert-date)
2220 (defun unfill-paragraph (arg)
2221 "Pull this whole paragraph up onto one line."
2223 (let ((fill-column 10000))
2224 (fill-paragraph arg))
2227 (column-number-mode t)
2230 ** Desktop-save-mode
2231 If the envvar EMACS_SERVER_NAME is set, consider this a separate
2232 emacs, and use a different desktop file to restore history
2233 #+BEGIN_SRC emacs-lisp
2237 (setq desktop-base-file-name
2238 (convert-standard-filename
2240 (or (getenv "EMACS_SERVER_NAME")
2244 (setq desktop-base-lock-name
2245 (convert-standard-filename
2246 (concat desktop-base-file-name
2248 (setq desktop-auto-save-timeout 60)
2249 (setq desktop-restore-eager 5)
2250 (setq desktop-lazy-verbose nil)
2251 (desktop-save-mode 1)
2255 ** Misc (Uncharacterized)
2256 #+BEGIN_SRC emacs-lisp
2257 '(icomplete-mode on)
2259 ;; custom-set-faces was added by Custom.
2260 ;; If you edit it by hand, you could mess it up, so be careful.
2261 ;; Your init file should contain only one such instance.
2262 ;; If there is more than one, they won't work right.
2263 '(menu ((((type x-toolkit)) (:background "black" :foreground "grey90")))))
2266 (put 'upcase-region 'disabled nil)
2267 (put 'downcase-region 'disabled nil)
2268 (put 'narrow-to-region 'disabled nil)
2270 ; (defun turn-on-flyspell ()
2271 ; "Force flyspell-mode on using a positive arg. For use in hooks."
2273 ; (flyspell-mode 1))
2276 ; Outline-minor-mode key map
2277 (define-prefix-command 'cm-map nil "Outline-")
2279 (define-key cm-map "q" 'outline-hide-sublevels) ; Hide everything but the top-level headings
2280 (define-key cm-map "t" 'outline-hide-body) ; Hide everything but headings (all body lines)
2281 (define-key cm-map "o" 'outline-hide-other) ; Hide other branches
2282 (define-key cm-map "c" 'outline-hide-entry) ; Hide this entry's body
2283 (define-key cm-map "l" 'outline-hide-leaves) ; Hide body lines in this entry and sub-entries
2284 (define-key cm-map "d" 'outline-hide-subtree) ; Hide everything in this entry and sub-entries
2286 (define-key cm-map "a" 'outline-show-all) ; Show (expand) everything
2287 (define-key cm-map "e" 'outline-show-entry) ; Show this heading's body
2288 (define-key cm-map "i" 'outline-show-children) ; Show this heading's immediate child sub-headings
2289 (define-key cm-map "k" 'outline-show-branches) ; Show all sub-headings under this heading
2290 (define-key cm-map "s" 'outline-show-subtree) ; Show (expand) everything in this heading & below
2292 (define-key cm-map "u" 'outline-up-heading) ; Up
2293 (define-key cm-map "n" 'outline-next-visible-heading) ; Next
2294 (define-key cm-map "p" 'outline-previous-visible-heading) ; Previous
2295 (define-key cm-map "f" 'outline-forward-same-level) ; Forward - same level
2296 (define-key cm-map "b" 'outline-backward-same-level) ; Backward - same level
2297 (global-set-key "\M-o" cm-map)
2298 ; fix up tmux xterm keys
2299 ; stolen from http://unix.stackexchange.com/questions/24414/shift-arrow-not-working-in-emacs-within-tmux
2300 (defun fix-up-tmux-keys ()
2301 "Fix up tmux xterm keys"
2304 (let ((x 2) (tkey ""))
2324 ;; ctrl + alt + shift
2326 (setq tkey "C-M-S-"))
2329 (define-key key-translation-map (kbd (format "M-[ 1 ; %d A" x)) (kbd (format "%s<up>" tkey)))
2330 (define-key key-translation-map (kbd (format "M-[ 1 ; %d B" x)) (kbd (format "%s<down>" tkey)))
2331 (define-key key-translation-map (kbd (format "M-[ 1 ; %d C" x)) (kbd (format "%s<right>" tkey)))
2332 (define-key key-translation-map (kbd (format "M-[ 1 ; %d D" x)) (kbd (format "%s<left>" tkey)))
2334 (define-key key-translation-map (kbd (format "M-[ 1 ; %d H" x)) (kbd (format "%s<home>" tkey)))
2336 (define-key key-translation-map (kbd (format "M-[ 1 ; %d F" x)) (kbd (format "%s<end>" tkey)))
2338 (define-key key-translation-map (kbd (format "M-[ 5 ; %d ~" x)) (kbd (format "%s<prior>" tkey)))
2340 (define-key key-translation-map (kbd (format "M-[ 6 ; %d ~" x)) (kbd (format "%s<next>" tkey)))
2342 (define-key key-translation-map (kbd (format "M-[ 2 ; %d ~" x)) (kbd (format "%s<delete>" tkey)))
2344 (define-key key-translation-map (kbd (format "M-[ 3 ; %d ~" x)) (kbd (format "%s<delete>" tkey)))
2346 (define-key key-translation-map (kbd (format "M-[ 1 ; %d P" x)) (kbd (format "%s<f1>" tkey)))
2348 (define-key key-translation-map (kbd (format "M-[ 1 ; %d Q" x)) (kbd (format "%s<f2>" tkey)))
2350 (define-key key-translation-map (kbd (format "M-[ 1 ; %d R" x)) (kbd (format "%s<f3>" tkey)))
2352 (define-key key-translation-map (kbd (format "M-[ 1 ; %d S" x)) (kbd (format "%s<f4>" tkey)))
2354 (define-key key-translation-map (kbd (format "M-[ 15 ; %d ~" x)) (kbd (format "%s<f5>" tkey)))
2356 (define-key key-translation-map (kbd (format "M-[ 17 ; %d ~" x)) (kbd (format "%s<f6>" tkey)))
2358 (define-key key-translation-map (kbd (format "M-[ 18 ; %d ~" x)) (kbd (format "%s<f7>" tkey)))
2360 (define-key key-translation-map (kbd (format "M-[ 19 ; %d ~" x)) (kbd (format "%s<f8>" tkey)))
2362 (define-key key-translation-map (kbd (format "M-[ 20 ; %d ~" x)) (kbd (format "%s<f9>" tkey)))
2364 (define-key key-translation-map (kbd (format "M-[ 21 ; %d ~" x)) (kbd (format "%s<f10>" tkey)))
2366 (define-key key-translation-map (kbd (format "M-[ 23 ; %d ~" x)) (kbd (format "%s<f11>" tkey)))
2368 (define-key key-translation-map (kbd (format "M-[ 24 ; %d ~" x)) (kbd (format "%s<f12>" tkey)))
2370 (define-key key-translation-map (kbd (format "M-[ 25 ; %d ~" x)) (kbd (format "%s<f13>" tkey)))
2372 (define-key key-translation-map (kbd (format "M-[ 26 ; %d ~" x)) (kbd (format "%s<f14>" tkey)))
2374 (define-key key-translation-map (kbd (format "M-[ 28 ; %d ~" x)) (kbd (format "%s<f15>" tkey)))
2376 (define-key key-translation-map (kbd (format "M-[ 29 ; %d ~" x)) (kbd (format "%s<f16>" tkey)))
2378 (define-key key-translation-map (kbd (format "M-[ 31 ; %d ~" x)) (kbd (format "%s<f17>" tkey)))
2380 (define-key key-translation-map (kbd (format "M-[ 32 ; %d ~" x)) (kbd (format "%s<f18>" tkey)))
2382 (define-key key-translation-map (kbd (format "M-[ 33 ; %d ~" x)) (kbd (format "%s<f19>" tkey)))
2384 (define-key key-translation-map (kbd (format "M-[ 34 ; %d ~" x)) (kbd (format "%s<f20>" tkey)))
2391 ; (add-hook 'tty-setup-hook 'fix-up-tmux-keys)
2393 (defadvice ask-user-about-supersession-threat (around ask-user-about-supersession-threat-if-necessary)
2394 "Call ask-user-about-supersession-threat only if the buffer is actually obsolete."
2395 (if (or (buffer-modified-p)
2396 (verify-visited-file-modtime)
2397 (< (* 8 1024 1024) (buffer-size))
2398 (/= 0 (call-process-region 1 (+ 1 (buffer-size)) "diff" nil nil nil "-q" (buffer-file-name) "-")))
2400 (clear-visited-file-modtime)
2402 (ad-activate 'ask-user-about-supersession-threat)
2406 #+BEGIN_SRC emacs-lisp
2410 (or (getenv "EMACS_SERVER_NAME")
2412 (unless (server-running-p)
2413 (global-set-key "\C-xp" 'server-edit)
2420 #+BEGIN_SRC emacs-lisp
2421 (provide 'don-configuration)