"~/projects/sysadmin/sndservers/sndservers.org"
"~/projects/chaim/chaim.org"
"~/projects/chaim/papers/gwas_paper_2012/gwas_paper.org"
+ "~/projects/reviews/reviews.org"
"~/projects/fh/fh.org")))
(setq org-global-properties '(("Effort_ALL 0 0:10 0:30 1:00 2:00 3:00 4:00 5:00 6:00 7:00")))
-(setq org-columns-default-format "%40ITEM(Task) %TAGS %PRIORITY %TODO %13SCHEDULED %17Effort(Estimated Effort){:} %CLOCKSUM")
+(setq org-columns-default-format "%40ITEM(Task) %TAGS %PRIORITY %TODO %13SCHEDULED %13DEADLINE %6Effort{:} %CLOCKSUM")
(setq org-default-notes-file "~/projects/notes/notes.org")
(setq org-capture-templates ;; mail-specific note template, identified by "m"
(add-hook 'org-clock-out-hook 'bh/remove-empty-drawer-on-clock-out 'append)
+; resolve clocks after 10 minutes of idle; use xprintidle
+(setq org-clock-idle-time 10)
+(setq org-clock-x11idle-program-name "xprintidle")
+
; this is from http://doc.norang.ca/org-mode.html#Capture
; use C-M-r for org mode capture
(global-set-key (kbd "C-M-r") 'org-capture)
(setq my-org-protocol-flag t))
+;; org modules
+(add-to-list 'org-modules 'org-habit)
+
; this comes from http://upsilon.cc/~zack/blog/posts/2010/02/integrating_Mutt_with_Org-mode/
(defun open-mail-in-mutt (message)
"Open a mail message in Mutt, using an external terminal.
cperl-auto-newline nil
cperl-auto-newline-after-colon nil
cperl-continued-statement-offset 4
- cperl-brace-offset -4
+ cperl-brace-offset -1
cperl-continued-brace-offset 0
cperl-label-offset -4
cperl-highlight-variables-indiscriminately t
cperl-electric-lbrace-space nil
- cperl-indent-parens-as-block t
+ cperl-indent-parens-as-block nil
+ cperl-close-paren-offset -1
cperl-tab-always-indent t)
;(add-hook 'cperl-mode-hook (lambda () (cperl-set-style "PerlStyle")))
(?h . "*** %t\n:PROPERTIES:\n:Custom_ID: %l\n:END:\n[[papers:%l][%l paper]]")))
))
(define-key org-mode-map (kbd "C-c )") 'reftex-citation)
+ (define-key org-mode-map (kbd "C-c [") 'reftex-citation)
(define-key org-mode-map (kbd "C-c (") 'org-mode-reftex-search)
(define-key org-mode-map (kbd "C-c 0") 'reftex-view-crossref)
)
(shell-command
(format "%s %s"
(substitute-in-file-name "$HOME/bin/bibtex_to_paper") bibtexkey)))
+(org-add-link-type "papers" 'open-research-paper)
+
;; stolen from
;; http://www-public.it-sudparis.eu/~berger_o/weblog/2012/03/23/how-to-manage-and-export-bibliographic-notesrefs-in-org-mode/
(setq-default org-directory "/home/don/org-mode/")
(setq-default org-mobile-inbox-for-pull "/home/don/org-mode/from-mobile.org")
+;; org mode ical export
+(setq org-icalendar-timezone "America/Los_Angeles")
+(setq org-icalendar-use-scheduled '(todo-start event-if-todo))
+(setq org-icalendar-store-UID t)
+
+;; org babel support
+(org-babel-do-load-languages
+ 'org-babel-load-languages
+ '((emacs-lisp . t )
+ (R . t)
+ (latex . t)))
+;; org-babel-by-backend
+(defmacro org-babel-by-backend (&rest body)
+ `(case (if (boundp 'backend)
+ (org-export-backend-name backend)
+ nil) ,@body))
+
+
+
;; org latex
;; stolen from http://kieranhealy.org/esk/kjhealy.html
(require 'org-latex)
;; default listings package instead, use
;; (setq org-latex-listings t)
;; and change references to "minted" below to "listings"
-(setq org-latex-listings 'minted)
+; (setq org-latex-listings 'minted)
;; default settings for minted code blocks
(setq org-latex-minted-options
("\\subsection{%s}" . "\\subsection*{%s}")
("\\subsubsection{%s}" . "\\subsubsection*{%s}")))
+(add-to-list 'org-latex-classes
+ '("letter"
+ "\\documentclass[11pt]{letter}"
+ ("\\section{%s}" . "\\section*{%s}")
+ ("\\subsection{%s}" . "\\subsection*{%s}")
+ ("\\subsubsection{%s}" . "\\subsubsection*{%s}")
+ ("\\paragraph{%s}" . "\\paragraph*{%s}")
+ ("\\subparagraph{%s}" . "\\subparagraph*{%s}")))
+
;; Originally taken from Bruno Tavernier: http://thread.gmane.org/gmane.emacs.orgmode/31150/focus=31432
;; but adapted to use latexmk 4.22 or higher.
-(defun my-auto-tex-cmd ()
- "When exporting from .org with latex, automatically run latex,
- pdflatex, or xelatex as appropriate, using latexmk."
- (let ((texcmd)))
- ;; default command: pdflatex
- (setq texcmd "latexmk -pdflatex='pdflatex -synctex=1 --shell-escape --' -pdf %f")
- ;; pdflatex -> .pdf
- (if (string-match "LATEX_CMD: pdflatex" (buffer-string))
- (setq texcmd "latexmk -pdflatex='pdflatex -synctex=1 --shell-escape' -pdf %f"))
- ;; xelatex -> .pdf
- (if (string-match "LATEX_CMD: xelatex" (buffer-string))
- (setq texcmd "latexmk -pdflatex='xelatex -syntex=1 --shell-escape' -bibtex -use-make -pdf %f"))
- ;; LaTeX compilation command
- (setq org-latex-to-pdf-process (list texcmd)))
-
-(add-hook 'org-latex-after-initial-vars-hook 'my-auto-tex-cmd)
+(setq org-latex-pdf-process '("latexmk -pdflatex=xelatex -bibtex -use-make -pdf %f"))
;; Default packages included in /every/ tex file, latex, pdflatex or xelatex
+(setq org-latex-default-packages-alist
+ '(("" "fontspec" t)
+ ("" "xunicode" t)
+ ))
(setq org-latex-packages-alist
'(("" "graphicx" t)
+ ("" "fontspec" t)
+ ("" "xunicode" t)
+ ("" "hyperref" t)
+ ("" "url" t)
+ ("" "rotating" t)
("" "longtable" nil)
("" "float" )))
-;; Custom packages
-(defun my-auto-tex-parameters ()
- "Automatically select the tex packages to include. See https://github.com/kjhealy/latex-custom-kjh for the support files included here."
- ;; default packages for ordinary latex or pdflatex export
- (setq org-latex-default-packages-alist
- '(("AUTO" "inputenc" t)
- ("minted,minion" "org-preamble-pdflatex" t)))
- ;; Packages to include when xelatex is used
- (if (string-match "LATEX_CMD: xelatex" (buffer-string))
- (setq org-latex-default-packages-alist
- '(("minted" "org-preamble-xelatex" t) ))))
-
-(add-hook 'org-latex-after-initial-vars-hook 'my-auto-tex-parameters)
-
; support ignoring headers in org mode export to latex
; from http://article.gmane.org/gmane.emacs.orgmode/67692
(defadvice org-latex-headline (around my-latex-skip-headlines
(setq-default debian-changelog-mailing-address "don@debian.org")
(setq-default debian-changelog-full-name "Don Armstrong")
+; ediff configuration
+; don't use the multi-window configuration
+(setq ediff-window-setup-function 'ediff-setup-windows-plain)
+
; use iedit
(require 'iedit)
(define-key global-map (kbd "C-;") 'iedit-mode)
projects / emacs.git / blobdiff