(custom-set-variables ;; custom-set-variables was added by Custom. ;; If you edit it by hand, you could mess it up, so be careful. ;; Your init file should contain only one such instance. ;; If there is more than one, they won't work right. '(bibtex-user-optional-fields (quote (("annote" "Personal annotation (ignored)") ("abstract" "") ("pmid" "") ("doi" "")))) '(calendar-latitude [33 57 north]) '(calendar-longitude [117 24 west]) '(case-fold-search t) '(confirm-kill-emacs (quote y-or-n-p)) '(cperl-lazy-help-time nil) '(debian-changelog-mailing-address "don@debian.org" t) '(display-time t) '(display-time-24hr-format t) '(display-time-day-and-date t) '(display-time-mode t) '(font-latex-fontify-script nil) '(font-latex-fontify-sectioning (quote color)) '(font-latex-script-display (quote (nil))) '(global-auto-revert-mode t) '(global-font-lock-mode t nil (font-lock)) '(global-set-key "\347" t) '(iswitchb-mode t) '(iswitchb-prompt-newbuffer nil) '(log-edit-keep-buffer t) '(mail-user-agent (quote sendmail-user-agent)) '(markdown-enable-math t) '(markdown-follow-wiki-link-on-enter nil) '(mutt-alias-file-list (quote ("~/.mutt/aliases" "~/.mail_aliases"))) '(post-email-address "don@donarmstrong.com") '(post-kill-quoted-sig nil) '(post-mail-message "mutt\\(ng\\|\\)-[a-z0-9]+-[0-9]+-.*") '(post-uses-fill-mode nil) '(ps-footer-font-size (quote (8 . 10))) '(ps-header-font-size (quote (8 . 10))) '(ps-header-title-font-size (quote (10 . 10))) '(ps-line-number-color "blue") '(ps-print-footer t) '(ps-print-footer-frame nil) '(ps-print-only-one-header t) '(safe-local-variable-values (quote ((auto-save-default) (make-backup-files)))) '(sentence-end "[.?!][]\"')]*\\($\\| \\| \\)[ ]*") '(sentence-end-double-space nil) '(show-paren-mode t) '(tool-bar-mode nil nil (tool-bar)) '(user-mail-address "don@donarmstrong.com") '(vc-delete-logbuf-window nil) '(vc-follow-symlinks t)) ;; use git before SVN; use CVS earlier, because I have CVS ;; repositories inside of git directories (setq vc-handled-backends (quote (CVS Git RCS SVN SCCS Bzr Hg Mtn Arch))) ;; switch back to the old primary selection method (setq x-select-enable-clipboard nil) (setq x-select-enable-primary t) ; (setq mouse-drag-copy-region t) (fset 'perl-mode 'cperl-mode) ;;(load-file "cperl-mode.el") (add-to-list 'load-path '"~/lib/emacs_el/") ;; this is the tiny-tools module from https://github.com/jaalto/project--emacs-tiny-tools.git (add-to-list 'load-path '"~/lib/emacs_el/tiny-tools/lisp/tiny") (add-to-list 'load-path '"~/lib/emacs_el/tiny-tools/lisp/other") ;;(add-to-list 'Tex-style-path '"~/lib/emacs_el/auctex/") (setq tinyprocmail--procmail-version "v3.22") (add-hook 'tinyprocmail--load-hook 'tinyprocmail-install) (require 'tinyprocmail) (require 'vcl-mode) (require 'tex-site) ;;(require 'psvn) (require 'cperl-mode) ;;(require 'ecasound) ;;(require 'emacs-wiki) (require 'bibtex) (require 'post) ;;(require 'fixme) (require 'google-weather) (require 'org-google-weather) (setq-default org-google-weather-format "%i %c, [%l,%h] %s %C") ; http://julien.danjou.info/projects/emacs-packages#rainbow-mode ; this colorizes color strings (require 'rainbow-mode) ; add ess to the x major mode (add-to-list 'rainbow-x-colors-major-mode-list 'ESS[S]) (add-to-list 'rainbow-x-colors-major-mode-list 'ESS[R]) ; org mode agenda files (setq org-agenda-files (quote ("~/projects/debbugs/debbugs.org" "~/projects/notes/notes.org" "~/projects/origins_of_life/ool.org" "~/projects/sysadmin/sndservers/sndservers.org" "~/projects/chaim/chaim.org" "~/projects/chaim/papers/gwas_paper_2012/gwas_paper.org" "~/projects/reviews/reviews.org" "~/projects/fh/fh.org"))) (setq org-global-properties '(("Effort_ALL 0 0:10 0:30 1:00 2:00 3:00 4:00 5:00 6:00 7:00"))) (setq org-columns-default-format "%40ITEM(Task) %TAGS %PRIORITY %TODO %13SCHEDULED %13DEADLINE %6Effort{:} %CLOCKSUM") (setq org-default-notes-file "~/projects/notes/notes.org") (setq org-capture-templates ;; mail-specific note template, identified by "m" '(("m" "Mail" entry (file+headline "~/projects/notes/refile.org" "Mail") "* %?\n\n Source: %u, %c\n %i") ("t" "todo" entry (file "~/projects/notes/refile.org") "* TODO %?\n%U\n%a\n" :clock-in t :clock-resume t) ("r" "respond" entry (file "~/projects/notes/refile.org") "* NEXT Respond to %:from on %:subject\nSCHEDULED: %t\n%U\n%a\n" :clock-in t :clock-resume t :immediate-finish t) ("n" "note" entry (file "~/projects/notes/refile.org") "* %? :NOTE:\n%U\n%a\n" :clock-in t :clock-resume t) ("j" "Journal" entry (file+datetree "~/projects/notes/diary.org") "* %?\n%U\n" :clock-in t :clock-resume t) ("w" "org-protocol" entry (file "~/projects/notes/refile.org") "* TODO Review %c\n%U\n" :immediate-finish t) ("p" "Phone call" entry (file "~/projects/notes/refile.org") "* PHONE %? :PHONE:\n%U" :clock-in t :clock-resume t) ("h" "Habit" entry (file "~/projects/notes/refile.org") "* NEXT %?\n%U\n%a\nSCHEDULED: %(format-time-string \"<%Y-%m-%d %a .+1d/3d>\")\n:PROPERTIES:\n:STYLE: habit\n:REPEAT_TO_STATE: NEXT\n:END:\n") ) ) ;; Remove empty LOGBOOK drawers on clock out (defun bh/remove-empty-drawer-on-clock-out () (interactive) (save-excursion (beginning-of-line 0) (org-remove-empty-drawer-at "LOGBOOK" (point)))) (add-hook 'org-clock-out-hook 'bh/remove-empty-drawer-on-clock-out 'append) ; resolve clocks after 10 minutes of idle; use xprintidle (setq org-clock-idle-time 10) (setq org-clock-x11idle-program-name "xprintidle") ; this is from http://doc.norang.ca/org-mode.html#Capture ; use C-M-r for org mode capture (global-set-key (kbd "C-M-r") 'org-capture) ; Targets include this file and any file contributing to the agenda - up to 9 levels deep (setq org-refile-targets (quote ((nil :maxlevel . 9) (org-agenda-files :maxlevel . 9)))) ; Use full outline paths for refile targets - we file directly with IDO (setq org-refile-use-outline-path t) ; Targets complete directly with IDO (setq org-outline-path-complete-in-steps nil) ; Allow refile to create parent tasks with confirmation (setq org-refile-allow-creating-parent-nodes (quote confirm)) ; Use IDO for both buffer and file completion and ido-everywhere to t (setq org-completion-use-ido t) (setq ido-everywhere t) (setq ido-max-directory-size 100000) (ido-mode (quote both)) ;;;; Refile settings ; Exclude DONE state tasks from refile targets (defun bh/verify-refile-target () "Exclude todo keywords with a done state from refile targets" (not (member (nth 2 (org-heading-components)) org-done-keywords))) (setq org-refile-target-verify-function 'bh/verify-refile-target) ;; ensure that emacsclient will show just the note to be edited when invoked ;; from Mutt, and that it will shut down emacsclient once finished; ;; fallback to legacy behavior when not invoked via org-protocol. (require 'org-protocol) (add-hook 'org-capture-mode-hook 'delete-other-windows) (setq my-org-protocol-flag nil) (defadvice org-capture-finalize (after delete-frame-at-end activate) "Delete frame at remember finalization" (progn (if my-org-protocol-flag (delete-frame)) (setq my-org-protocol-flag nil))) (defadvice org-capture-refile (around delete-frame-after-refile activate) "Delete frame at remember refile" (if my-org-protocol-flag (progn (setq my-org-protocol-flag nil) ad-do-it (delete-frame)) ad-do-it) ) (defadvice org-capture-kill (after delete-frame-at-end activate) "Delete frame at remember abort" (progn (if my-org-protocol-flag (delete-frame)) (setq my-org-protocol-flag nil))) (defadvice org-protocol-capture (before set-org-protocol-flag activate) (setq my-org-protocol-flag t)) ;; org modules (add-to-list 'org-modules 'org-habit) ; this comes from http://upsilon.cc/~zack/blog/posts/2010/02/integrating_Mutt_with_Org-mode/ (defun open-mail-in-mutt (message) "Open a mail message in Mutt, using an external terminal. Message can be specified either by a path pointing inside a Maildir, or by Message-ID." (interactive "MPath or Message-ID: ") (shell-command (format "xterm -e \"%s %s\"" (substitute-in-file-name "$HOME/bin/mutt_open") message))) ;; add support for "mutt:ID" links (org-add-link-type "mutt" 'open-mail-in-mutt) (global-set-key "\C-xp" 'server-edit) (setq-default auto-mode-alist (cons '("\.wml$" . (lambda () (html-mode) (auto-fill-mode))) auto-mode-alist)) ;; Use c-mode for perl .xs files (add-to-list 'auto-mode-alist '("\\.xs\\'" . c-mode)) (add-to-list 'auto-mode-alist '("\\.\\([pP][Llm]\\|al\\)\\'" . cperl-mode)) (add-to-list 'interpreter-mode-alist '("perl" . cperl-mode)) (add-to-list 'interpreter-mode-alist '("perl5" . cperl-mode)) (add-to-list 'interpreter-mode-alist '("miniperl" . cperl-mode)) ; use markdown mode for mdwn files (add-to-list 'auto-mode-alist '("\\.mdwn$" . markdown-mode)) ; mail configuration (add-to-list 'auto-mode-alist '("muttng-[a-z0-9]+-[0-9]+-" . message-mode)) (add-to-list 'auto-mode-alist '("muttngrc" . muttrc-mode)) (add-to-list 'auto-mode-alist '("mutt-[a-z0-9]+-[0-9]+-" . message-mode)) (add-to-list 'auto-mode-alist '("muttrc" . muttrc-mode)) (defun my-message-mode-settings () (font-lock-add-keywords nil '(("^[ \t]*>[ \t]*>[ \t]*>.*$" (0 'message-multiply-quoted-text-face)) ("^[ \t]*>[ \t]*>.*$" (0 'message-double-quoted-text-face)))) (local-set-key (kbd "C-c C-a") 'my-post-attach-file) ) (add-hook 'message-mode-hook 'my-message-mode-settings) (defun my-post-attach-file () "Prompt for an attachment." (interactive) (let ((file (read-file-name "Attach file: " nil nil t nil)) (description (string-read "Description: "))) (my-header-attach-file file description))) (symbol-function 'my-post-attach-file) (defun my-header-attach-file (file description) "Attach a FILE to the current message (works with Mutt). Argument DESCRIPTION MIME description." (interactive "fAttach file: \nsDescription: ") (when (> (length file) 0) (save-excursion (save-match-data (save-restriction (widen) (goto-char (point-min)) (search-forward-regexp "^$") (insert (concat "Attach: " (replace-regexp-in-string "\\([[:space:]\\]\\)" "\\\\\\1" (file-truename file)) " " description "\n")) (message (concat "Attached '" file "'.")) (setq post-has-attachment t)))))) (setq mail-yank-prefix "> ") (global-unset-key "\M-g") (global-set-key "\M-g" 'goto-line) ;;(autoload 'perl-mode "cperl-mode" ;; "alternate mode for editing Perl programs" t) ;; self-insert-command hack. ;; Without this, "if" expands to ;; if ( -!-) { ;; } ;; which really should be, ;; if (-!-) { ;; } (setq cperl-hairy t cperl-indent-level 4 cperl-auto-newline nil cperl-auto-newline-after-colon nil cperl-continued-statement-offset 4 cperl-brace-offset -1 cperl-continued-brace-offset 0 cperl-label-offset -4 cperl-highlight-variables-indiscriminately t cperl-electric-lbrace-space nil cperl-indent-parens-as-block nil cperl-close-paren-offset -1 cperl-tab-always-indent t) ;(add-hook 'cperl-mode-hook (lambda () (cperl-set-style "PerlStyle"))) ;(load-library "php-mode") (setq-default c-indent-level 4) (setq-default c-brace-imaginary-offset 0) (setq-default c-brace-offset -4) (setq-default c-argdecl-indent 4) (setq-default c-label-offset -4) (setq-default c-continued-statement-offset 4) ; tabs are annoying (setq-default indent-tabs-mode nil) (setq-default tab-width 4) ;; (autoload 'php-mode "php-mode" "PHP editing mode" t) ;; (add-to-list 'auto-mode-alist '("\\.php3?\\'" . php-mode)) ;; (add-to-list 'auto-mode-alist '("\\.phtml?\\'" . php-mode)) ;; (add-to-list 'auto-mode-alist '("\\.php?\\'" . php-mode)) ;; (add-to-list 'auto-mode-alist '("\\.php4?\\'" . php-mode)) ;; REFTEX (much enhanced management of cross-ref, labels, etc) ;; http://www.strw.leidenuniv.nl/~dominik/Tools/reftex/ (autoload 'reftex-mode "reftex" "RefTeX Minor Mode" t) (autoload 'turn-on-reftex "reftex" "RefTeX Minor Mode" nil) (autoload 'reftex-citation "reftex-cite" "Make citation" nil) (autoload 'reftex-index-phrase-mode "reftex-index" "Phrase mode" t) (add-hook 'LaTeX-mode-hook 'turn-on-reftex) ; with AUCTeX LaTeX mode (add-hook 'latex-mode-hook 'turn-on-reftex) ; with Emacs latex mode (add-hook 'LaTeX-mode-hook 'outline-minor-mode) ; with AUCTeX LaTeX mode (add-hook 'latex-mode-hook 'outline-minor-mode) ; with Emacs latex mode ; use smart quotes by default instead of `` and '' ; taken from http://kieranhealy.org/esk/kjhealy.html (setq TeX-open-quote "“") (setq TeX-close-quote "”") ;; (TeX-add-style-hook ;; "latex" ;; (lambda () ;; (TeX-add-symbols ;; '("DLA" 1)))) ;; (custom-set-variables ;; '(font-latex-user-keyword-classes ;; '(("fixme" ;; ("DLA" "RZ") ;; font-lock-function-name-face 2 (command 1 t)))) ;; ) (require 'font-latex) (setq font-latex-match-reference-keywords '( ("fref" "{") ("Fref" "{") ("citep" "{") ("citet" "{") ("acs" "{") ("acsp" "{") ("ac" "{") ("acp" "{") ("acl" "{") ("aclp" "{") ("acsu" "{") ("aclu" "{") ("acused" "{") ; )) ; (setq font-latex-match-warning-keywords ; '( ("DLA" "{") ("RZ" "{") ("OM" "{") ("DL" "{") ("fixme" "{"))) (setq-default TeX-parse-self t) (setq-default TeX-auto-save t) (setq-default TeX-master nil) ;; this doesn't seem to work; not currently sure why ; (setq font-latex-user-keyword-classes ; '(("my-warning-commands" ; (("DLA" "{") ; ("RZ" "{") ; ("OM" "{") ; ("DL" "{") ; ("fixme" "{") ; ) ; (:foreground "red" :weight bold :underline (:color foreground-color :style line))) ; )) (defun insert-date () "Insert date at point." (interactive) (insert (format-time-string "%A, %B %e, %Y %k:%M:%S %Z"))) (global-set-key "\C-[d" 'insert-date) (defun unfill-paragraph (arg) "Pull this whole paragraph up onto one line." (interactive "*p") (let ((fill-column 10000)) (fill-paragraph arg)) ) ;(iswitchb-default-keybindings) (column-number-mode t) (setq-default reftex-plug-into-AUCTeX t) (server-start) (require 'mode-compile) (setq-default reftex-default-bibliography '("references.bib")) (defadvice server-process-filter (after post-mode-message first activate) "If the buffer is in post mode, overwrite the server-edit message with a post-save-current-buffer-and-exit message." (if (eq major-mode 'post-mode) (message (substitute-command-keys "Type \\[describe-mode] for help composing; \\[post-save-current-buffer-and-exit] when done.")))) ; This is also needed to see the magic message. Set to a higher ; number if you have a faster computer or read slower than me. '(font-lock-verbose 1000) ;(setq-default server-temp-file-regexp "mutt\(-\|ng-\)") ; (add-hook 'server-switch-hook ; (function (lambda() ; (cond ((string-match "Post" mode-name) ; (post-goto-body))) ; set-buffer-file-coding-system 'utf-8 ; ))) ; (add-hook 'post-mode-hook (auto-fill-mode nil) ) ; abbrev mode settings ; load abbreviations from (setq abbrev-file-name "~/.emacs_abbrev_def") ; read the abbrev file if it exists (if (file-exists-p abbrev-file-name) (quietly-read-abbrev-file)) ; for now, use abbrev mode everywhere (setq default-abbrev-mode t) (defun insert-function-documentation () "Insert function documentation" (interactive) (insert-file-contents "/home/don/lib/templates/perl_function_documentation" nil)) (global-set-key "\M-f" 'insert-function-documentation) (eval-after-load "lilypond-mode" '(progn (load-library "lyqi-mode") (define-key LilyPond-mode-map "\C-cq" 'lyqi-mode))) (autoload 'spamassassin-mode "spamassassin-mode" nil t) (desktop-load-default) (desktop-read) '(iswitchb-mode on) (custom-set-faces ;; custom-set-faces was added by Custom. ;; If you edit it by hand, you could mess it up, so be careful. ;; Your init file should contain only one such instance. ;; If there is more than one, they won't work right. '(menu ((((type x-toolkit)) (:background "black" :foreground "grey90"))))) (defun ess-change-directory (path) "Set the current working directory to PATH for both *R* and Emacs." (interactive "DDirectory to change to: ") (when (file-exists-p path) (ess-command (concat "setwd(\"" path "\")\n")) ;; use file-name-as-directory to ensure it has trailing / (setq default-directory (file-name-as-directory path)))) (put 'upcase-region 'disabled nil) (put 'downcase-region 'disabled nil) (put 'narrow-to-region 'disabled nil) ;; The following lines are always needed. Choose your own keys. (add-to-list 'auto-mode-alist '("\\.org\\'" . org-mode)) (add-hook 'org-mode-hook 'turn-on-font-lock) ; not needed when global-font-lock-mode is on (global-set-key "\C-cl" 'org-store-link) (global-set-key "\C-ca" 'org-agenda) (global-set-key "\C-cb" 'org-iswitchb) (setq-default org-log-done 'time) (setq-default org-agenda-ndays 5) (autoload 'flyspell-mode "flyspell" "On-the-fly spelling checker." t) (add-hook 'message-mode-hook 'turn-on-flyspell) (add-hook 'text-mode-hook 'turn-on-flyspell) (add-hook 'c-mode-common-hook 'flyspell-prog-mode) (add-hook 'cperl-mode-hook 'flyspell-prog-mode) (add-hook 'tcl-mode-hook 'flyspell-prog-mode) (add-hook 'ess-mode-hook 'flyspell-prog-mode) (defun turn-on-flyspell () "Force flyspell-mode on using a positive arg. For use in hooks." (interactive) (flyspell-mode 1)) ;;; outlining support for ess modes (add-hook 'ess-mode-hook '(lambda () (outline-minor-mode) (setq outline-regexp "\\(^#\\{4,5\\} \\)\\|\\(^[a-zA-Z0-9_\.]+ ?<- ?function\\)") (defun outline-level () (cond ((looking-at "^##### ") 1) ((looking-at "^#### ") 2) ((looking-at "^[a-zA-Z0-9_\.]+ ?<- ?function(.*{") 3) (t 1000))) )) ; Outline-minor-mode key map (define-prefix-command 'cm-map nil "Outline-") ; HIDE (define-key cm-map "q" 'hide-sublevels) ; Hide everything but the top-level headings (define-key cm-map "t" 'hide-body) ; Hide everything but headings (all body lines) (define-key cm-map "o" 'hide-other) ; Hide other branches (define-key cm-map "c" 'hide-entry) ; Hide this entry's body (define-key cm-map "l" 'hide-leaves) ; Hide body lines in this entry and sub-entries (define-key cm-map "d" 'hide-subtree) ; Hide everything in this entry and sub-entries ; SHOW (define-key cm-map "a" 'show-all) ; Show (expand) everything (define-key cm-map "e" 'show-entry) ; Show this heading's body (define-key cm-map "i" 'show-children) ; Show this heading's immediate child sub-headings (define-key cm-map "k" 'show-branches) ; Show all sub-headings under this heading (define-key cm-map "s" 'show-subtree) ; Show (expand) everything in this heading & below ; MOVE (define-key cm-map "u" 'outline-up-heading) ; Up (define-key cm-map "n" 'outline-next-visible-heading) ; Next (define-key cm-map "p" 'outline-previous-visible-heading) ; Previous (define-key cm-map "f" 'outline-forward-same-level) ; Forward - same level (define-key cm-map "b" 'outline-backward-same-level) ; Backward - same level (global-set-key "\M-o" cm-map) (defun my-org-mode-setup () (load-library "reftex") (and (buffer-file-name) (file-exists-p (buffer-file-name)) (progn (reftex-parse-all) (reftex-set-cite-format '((?b . "[[bib::%l][%l-bib]]") (?n . "[[note::%l][%l-notes]]") (?c . "\\cite{%l}") (?h . "*** %t\n:PROPERTIES:\n:Custom_ID: %l\n:END:\n[[papers:%l][%l paper]]"))) )) (define-key org-mode-map (kbd "C-c )") 'reftex-citation) (define-key org-mode-map (kbd "C-c [") 'reftex-citation) (define-key org-mode-map (kbd "C-c (") 'org-mode-reftex-search) (define-key org-mode-map (kbd "C-c 0") 'reftex-view-crossref) ) (add-hook 'org-mode-hook 'my-org-mode-setup) (defun org-mode-reftex-search () (interactive) (org-open-link-from-string (format "[[notes:%s]]" (reftex-citation t)))) (defun open-research-paper (bibtexkey) "Open a paper by bibtex key" (interactive "bibtex key: ") (shell-command (format "%s %s" (substitute-in-file-name "$HOME/bin/bibtex_to_paper") bibtexkey))) (org-add-link-type "papers" 'open-research-paper) ;; stolen from ;; http://www-public.it-sudparis.eu/~berger_o/weblog/2012/03/23/how-to-manage-and-export-bibliographic-notesrefs-in-org-mode/ (defun my-rtcite-export-handler (path desc format) (message "my-rtcite-export-handler is called : path = %s, desc = %s, format = %s" path desc format) (let* ((search (when (string-match "::#?\\(.+\\)\\'" path) (match-string 1 path))) (path (substring path 0 (match-beginning 0)))) (cond ((eq format 'latex) (if (or (not desc) (equal 0 (search "rtcite:" desc))) (format "\\cite{%s}" search) (format "\\cite[%s]{%s}" desc search)))))) (org-add-link-type "rtcite" 'org-bibtex-open 'my-rtcite-export-handler) (setq-default org-mobile-directory "/rzlab.ucr.edu:/sites/dav.donarmstrong.com/root/org/") (setq-default org-directory "/home/don/org-mode/") (setq-default org-mobile-inbox-for-pull "/home/don/org-mode/from-mobile.org") ;; org mode ical export (setq org-icalendar-timezone "America/Los_Angeles") (setq org-icalendar-use-scheduled '(todo-start event-if-todo)) (setq org-icalendar-store-UID t) ;; org babel support (org-babel-do-load-languages 'org-babel-load-languages '((emacs-lisp . t ) (R . t) (latex . t))) ;; org-babel-by-backend (defmacro org-babel-by-backend (&rest body) `(case (if (boundp 'backend) (org-export-backend-name backend) nil) ,@body)) ;; org latex ;; stolen from http://kieranhealy.org/esk/kjhealy.html (require 'org-latex) ;; Choose either listings or minted for exporting source code blocks. ;; Using minted (as here) requires pygments be installed. To use the ;; default listings package instead, use ;; (setq org-latex-listings t) ;; and change references to "minted" below to "listings" ; (setq org-latex-listings 'minted) ;; default settings for minted code blocks (setq org-latex-minted-options '(;("frame" "single") ("bgcolor" "bg") ; bg will need to be defined in the preamble of your document. It's defined in org-preamble-pdflatex.sty and org-preamble-xelatex.sty below. ("fontsize" "\\small") )) ;; turn off the default toc behavior; deal with it properly in headers to files. (defun org-latex-no-toc (depth) (when depth (format "%% Org-mode is exporting headings to %s levels.\n" depth))) (setq org-latex-format-toc-function 'org-latex-no-toc) (require 'ox-latex) (add-to-list 'org-latex-classes '("memarticle" "\\documentclass[11pt,oneside,article]{memoir}\n" ("\\section{%s}" . "\\section*{%s}") ("\\subsection{%s}" . "\\subsection*{%s}") ("\\subsubsection{%s}" . "\\subsubsection*{%s}") ("\\paragraph{%s}" . "\\paragraph*{%s}") ("\\subparagraph{%s}" . "\\subparagraph*{%s}"))) (add-to-list 'org-latex-classes '("membook" "\\documentclass[11pt,oneside]{memoir}\n" ("\\chapter{%s}" . "\\chapter*{%s}") ("\\section{%s}" . "\\section*{%s}") ("\\subsection{%s}" . "\\subsection*{%s}") ("\\subsubsection{%s}" . "\\subsubsection*{%s}"))) (add-to-list 'org-latex-classes '("letter" "\\documentclass[11pt]{letter}" ("\\section{%s}" . "\\section*{%s}") ("\\subsection{%s}" . "\\subsection*{%s}") ("\\subsubsection{%s}" . "\\subsubsection*{%s}") ("\\paragraph{%s}" . "\\paragraph*{%s}") ("\\subparagraph{%s}" . "\\subparagraph*{%s}"))) ;; Originally taken from Bruno Tavernier: http://thread.gmane.org/gmane.emacs.orgmode/31150/focus=31432 ;; but adapted to use latexmk 4.22 or higher. (setq org-latex-pdf-process '("latexmk -pdflatex=xelatex -bibtex -use-make -pdf %f")) ;; Default packages included in /every/ tex file, latex, pdflatex or xelatex (setq org-latex-default-packages-alist '(("" "fontspec" t) ("" "xunicode" t) )) (setq org-latex-packages-alist '(("" "graphicx" t) ("" "fontspec" t) ("" "xunicode" t) ("" "hyperref" t) ("" "url" t) ("" "rotating" t) ("" "longtable" nil) ("" "float" ))) ; support ignoring headers in org mode export to latex ; from http://article.gmane.org/gmane.emacs.orgmode/67692 (defadvice org-latex-headline (around my-latex-skip-headlines (headline contents info) activate) (if (member "ignoreheading" (org-element-property :tags headline)) (setq ad-return-value contents) ad-do-it)) ; debian stuff (setq-default debian-changelog-mailing-address "don@debian.org") (setq-default debian-changelog-full-name "Don Armstrong") ; ediff configuration ; don't use the multi-window configuration (setq ediff-window-setup-function 'ediff-setup-windows-plain) ; use iedit (require 'iedit) (define-key global-map (kbd "C-;") 'iedit-mode) (global-set-key (kbd "C-;") 'iedit-mode) ; fix up css mode to not be silly ; from http://www.stokebloke.com/wordpress/2008/03/21/css-mode-indent-buffer-fix/ (setq cssm-indent-level 4) (setq cssm-newline-before-closing-bracket t) (setq cssm-indent-function #'cssm-c-style-indenter) (setq cssm-mirror-mode nil) (require 'multi-web-mode) (setq mweb-default-major-mode 'html-mode) (setq mweb-tags '((php-mode "<\\?php\\|<\\? \\|<\\?=" "\\?>") (js-mode "") (css-mode ""))) (setq mweb-filename-extensions '("php" "htm" "html" "ctp" "phtml" "php4" "php5")) (multi-web-global-mode 1) ; clean-mode-line from http://www.masteringemacs.org/articles/2012/09/10/hiding-replacing-modeline-strings/ (defvar mode-line-cleaner-alist `((auto-complete-mode . " α") (yas/minor-mode . " υ") (paredit-mode . " π") (eldoc-mode . "") (abbrev-mode . "") (my-keys-minor-mode . "") ;; Major modes (lisp-interaction-mode . "λ") (hi-lock-mode . "") (python-mode . "Py") (cperl-mode . "ρ") (auctex-mode . "Lχ") (org-agenda-mode . "øα") (org-mode . "ø") (emacs-lisp-mode . "EL") (nxhtml-mode . "nx")) "Alist for `clean-mode-line'. When you add a new element to the alist, keep in mind that you must pass the correct minor/major mode symbol and a string you want to use in the modeline *in lieu of* the original.") (defun clean-mode-line () (interactive) (loop for cleaner in mode-line-cleaner-alist do (let* ((mode (car cleaner)) (mode-str (cdr cleaner)) (old-mode-str (cdr (assq mode minor-mode-alist)))) (when old-mode-str (setcar old-mode-str mode-str)) ;; major mode (when (eq mode major-mode) (setq mode-name mode-str))))) (add-hook 'after-change-major-mode-hook 'clean-mode-line) ;;; alias the new `flymake-report-status-slim' to ;;; `flymake-report-status' (defalias 'flymake-report-status 'flymake-report-status-slim) (defun flymake-report-status-slim (e-w &optional status) "Show \"slim\" flymake status in mode line." (when e-w (setq flymake-mode-line-e-w e-w)) (when status (setq flymake-mode-line-status status)) (let* ((mode-line " Φ")) (when (> (length flymake-mode-line-e-w) 0) (setq mode-line (concat mode-line ":" flymake-mode-line-e-w))) (setq mode-line (concat mode-line flymake-mode-line-status)) (setq flymake-mode-line mode-line) (force-mode-line-update))) ; load sql-indent when sql is loaded (eval-after-load "sql" '(load-library "sql-indent")) ; fix up tmux xterm keys ; stolen from http://unix.stackexchange.com/questions/24414/shift-arrow-not-working-in-emacs-within-tmux (if (getenv "TMUX") (progn (let ((x 2) (tkey "")) (while (<= x 8) ;; shift (if (= x 2) (setq tkey "S-")) ;; alt (if (= x 3) (setq tkey "M-")) ;; alt + shift (if (= x 4) (setq tkey "M-S-")) ;; ctrl (if (= x 5) (setq tkey "C-")) ;; ctrl + shift (if (= x 6) (setq tkey "C-S-")) ;; ctrl + alt (if (= x 7) (setq tkey "C-M-")) ;; ctrl + alt + shift (if (= x 8) (setq tkey "C-M-S-")) ;; arrows (define-key key-translation-map (kbd (format "M-[ 1 ; %d A" x)) (kbd (format "%s" tkey))) (define-key key-translation-map (kbd (format "M-[ 1 ; %d B" x)) (kbd (format "%s" tkey))) (define-key key-translation-map (kbd (format "M-[ 1 ; %d C" x)) (kbd (format "%s" tkey))) (define-key key-translation-map (kbd (format "M-[ 1 ; %d D" x)) (kbd (format "%s" tkey))) ;; home (define-key key-translation-map (kbd (format "M-[ 1 ; %d H" x)) (kbd (format "%s" tkey))) ;; end (define-key key-translation-map (kbd (format "M-[ 1 ; %d F" x)) (kbd (format "%s" tkey))) ;; page up (define-key key-translation-map (kbd (format "M-[ 5 ; %d ~" x)) (kbd (format "%s" tkey))) ;; page down (define-key key-translation-map (kbd (format "M-[ 6 ; %d ~" x)) (kbd (format "%s" tkey))) ;; insert (define-key key-translation-map (kbd (format "M-[ 2 ; %d ~" x)) (kbd (format "%s" tkey))) ;; delete (define-key key-translation-map (kbd (format "M-[ 3 ; %d ~" x)) (kbd (format "%s" tkey))) ;; f1 (define-key key-translation-map (kbd (format "M-[ 1 ; %d P" x)) (kbd (format "%s" tkey))) ;; f2 (define-key key-translation-map (kbd (format "M-[ 1 ; %d Q" x)) (kbd (format "%s" tkey))) ;; f3 (define-key key-translation-map (kbd (format "M-[ 1 ; %d R" x)) (kbd (format "%s" tkey))) ;; f4 (define-key key-translation-map (kbd (format "M-[ 1 ; %d S" x)) (kbd (format "%s" tkey))) ;; f5 (define-key key-translation-map (kbd (format "M-[ 15 ; %d ~" x)) (kbd (format "%s" tkey))) ;; f6 (define-key key-translation-map (kbd (format "M-[ 17 ; %d ~" x)) (kbd (format "%s" tkey))) ;; f7 (define-key key-translation-map (kbd (format "M-[ 18 ; %d ~" x)) (kbd (format "%s" tkey))) ;; f8 (define-key key-translation-map (kbd (format "M-[ 19 ; %d ~" x)) (kbd (format "%s" tkey))) ;; f9 (define-key key-translation-map (kbd (format "M-[ 20 ; %d ~" x)) (kbd (format "%s" tkey))) ;; f10 (define-key key-translation-map (kbd (format "M-[ 21 ; %d ~" x)) (kbd (format "%s" tkey))) ;; f11 (define-key key-translation-map (kbd (format "M-[ 23 ; %d ~" x)) (kbd (format "%s" tkey))) ;; f12 (define-key key-translation-map (kbd (format "M-[ 24 ; %d ~" x)) (kbd (format "%s" tkey))) ;; f13 (define-key key-translation-map (kbd (format "M-[ 25 ; %d ~" x)) (kbd (format "%s" tkey))) ;; f14 (define-key key-translation-map (kbd (format "M-[ 26 ; %d ~" x)) (kbd (format "%s" tkey))) ;; f15 (define-key key-translation-map (kbd (format "M-[ 28 ; %d ~" x)) (kbd (format "%s" tkey))) ;; f16 (define-key key-translation-map (kbd (format "M-[ 29 ; %d ~" x)) (kbd (format "%s" tkey))) ;; f17 (define-key key-translation-map (kbd (format "M-[ 31 ; %d ~" x)) (kbd (format "%s" tkey))) ;; f18 (define-key key-translation-map (kbd (format "M-[ 32 ; %d ~" x)) (kbd (format "%s" tkey))) ;; f19 (define-key key-translation-map (kbd (format "M-[ 33 ; %d ~" x)) (kbd (format "%s" tkey))) ;; f20 (define-key key-translation-map (kbd (format "M-[ 34 ; %d ~" x)) (kbd (format "%s" tkey))) (setq x (+ x 1)) )) ) ) ; apparently things like to step on C-;, so we'll use a hack from ; http://stackoverflow.com/questions/683425/globally-override-key-binding-in-emacs/5340797#5340797 to fix this (defvar my-keys-minor-mode-map (make-keymap) "my-keys-minor-mode keymap.") ; use iedit everywhere (define-key my-keys-minor-mode-map (kbd "C-;") 'iedit-mode) (define-minor-mode my-keys-minor-mode "A minor mode so that my key settings override annoying major modes." t " my-keys" 'my-keys-minor-mode-map) (my-keys-minor-mode 1) (defun my-minibuffer-setup-hook () (my-keys-minor-mode 0)) (add-hook 'minibuffer-setup-hook 'my-minibuffer-setup-hook) (defadvice load (after give-my-keybindings-priority) "Try to ensure that my keybindings always have priority." (if (not (eq (car (car minor-mode-map-alist)) 'my-keys-minor-mode)) (let ((mykeys (assq 'my-keys-minor-mode minor-mode-map-alist))) (assq-delete-all 'my-keys-minor-mode minor-mode-map-alist) (add-to-list 'minor-mode-map-alist mykeys)))) (ad-activate 'load)