diamond_presentation_2015.Rnw

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   6 \usepackage{url}
   7 \usepackage{fancyhdr}
   8 \usepackage{graphicx}
   9 \usepackage[bf]{caption}
  10 \usepackage{rotating}
  11 \usepackage{wrapfig}
  12 \usepackage{fancybox}
  13 \usepackage{booktabs}
  14 % \usepackage{multirow}
  15 \usepackage{acronym}
  16 \usepackage{qrcode}
  17 \usepackage[backend=biber,natbib=true,hyperref=true,style=nature]{biblatex}
  18 \addbibresource{references.bib}
  19 % \usepackage[nomargin,inline,draft]{fixme}
  20 % \newcommand{\DLA}[1]{\textcolor{red}{\fxnote{DLA: #1}}}
  21 % \usepackage[hyperfigures,bookmarks,colorlinks,citecolor=black,filecolor=black,linkcolor=black,urlcolor=black]{hyperref}
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  23 \usepackage{tikz}
  24 \usepackage{nameref}
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  27
  28 % The textpos package is necessary to position textblocks at arbitary
  29 % places on the page.  Use showboxes option to show outlines of textboxes.
  30 % \usepackage[absolute]{textpos}
  31 \usepackage[absolute,showboxes]{textpos}
  32
  33 \usepackage{multirow}
  34 \usepackage{array}
  35
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  64   \logo{\begin{tikzpicture}% Pale figure
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  68 }
  69
  70 \title[DIAMOND]{DIAMOND: Fast protein alignment}
  71 \author[Don Armstrong]{Don L. Armstrong}
  72 \institute[IGB]{Institute for Genomic Biology, Computing Genomes
  73   for Reproductive Health, University of Illinois, Urbana-Champaign}
  74
  75 \begin{document}
  76
  77 <<load.libraries,echo=FALSE,results="hide",warning=FALSE,message=FALSE,error=FALSE,cache=FALSE>>=
  78 opts_chunk$set(dev="cairo_pdf",out.width="\\textwidth",out.height="0.8\\textheight",out.extra="keepaspectratio")
  79 #opts_chunk$set(cache=TRUE, autodep=TRUE)
  80 options(device = function(file, width = 8, height = 7, ...) {
  81   cairo_pdf(tempfile(), width = width, height = height, ...)
  82 })
  83 options(digits=2)
  84 library("data.table")
  85 library("ggplot2")
  86 library("reshape2")
  87 library("grid")
  88 library("xtable")
  89
  90 @
  91
  92 \IfFileExists{figures/relevant_xkcd.png}{\frame[plain]{\centering \includegraphics[width=\textwidth,height=0.8\textheight,keepaspectratio]{figures/relevant_xkcd.png}
  93
  94     \url{https://xkcd.com/1513/}}}
  95
  96 \frame[plain]{\titlepage}
  97
  98
  99
 100 \section{The Problem}
 101
 102 \section{The Previous Contenders}
 103
 104 \section{Diamond Methodology}
 105
 106 \section{Comparison}
 107
 108 \subsection{Speed}
 109
 110 \subsection{Accuracy}
 111
 112
 113 \section*{References}
 114
 115 \begin{frame}[plain]{References}
 116   \begin{center}
 117     \mbox{}\vspace{-\baselineskip}
 118     \printbibliography[heading=none]
 119   \end{center}
 120 \end{frame}
 121
 122 \end{document}