\documentclass[ignorenonframetext]{beamer} \usepackage{fontspec} \setmainfont{FreeSerif} \setsansfont{FreeSans} \setmonofont{FreeMono} \usepackage{url} \usepackage{fancyhdr} \usepackage{graphicx} \usepackage[bf]{caption} \usepackage{rotating} \usepackage{wrapfig} \usepackage{fancybox} \usepackage{booktabs} % \usepackage{multirow} \usepackage{acronym} \usepackage{qrcode} \usepackage[backend=biber,natbib=true,hyperref=true,style=nature]{biblatex} \addbibresource{references.bib} % \usepackage[nomargin,inline,draft]{fixme} % \newcommand{\DLA}[1]{\textcolor{red}{\fxnote{DLA: #1}}} % \usepackage[hyperfigures,bookmarks,colorlinks,citecolor=black,filecolor=black,linkcolor=black,urlcolor=black]{hyperref} \usepackage{texshade} \usepackage{tikz} \usepackage{nameref} \usepackage{zref-xr,zref-user} \renewcommand*{\bibfont}{\tiny} % The textpos package is necessary to position textblocks at arbitary % places on the page. Use showboxes option to show outlines of textboxes. % \usepackage[absolute]{textpos} \usepackage[absolute,showboxes]{textpos} \usepackage{multirow} \usepackage{array} \mode{ \usetheme{CambridgeUS} % http://identitystandards.illinois.edu/graphicstandardsmanual/generalguidelines/colors.html \definecolor{ilboldblue}{HTML}{002058} \definecolor{ilboldorange}{HTML}{E87722} \definecolor{ilblue}{HTML}{606EB2} \definecolor{ilorange}{HTML}{D45D00} \setbeamercolor{alerted text}{fg=ilboldorange} \setbeamercolor*{palette primary}{fg=ilblue,bg=ilorange} \setbeamercolor*{palette secondary}{fg=ilblue!20!white,bg=ilorange} \setbeamercolor*{palette tertiary}{bg=ilblue,fg=ilorange} \setbeamercolor*{palette quaternary}{fg=ilblue,bg=ilorange} \setbeamercolor*{sidebar}{fg=ilorange,bg=ilboldblue} \setbeamercolor*{palette sidebar primary}{fg=ilblue!10!white,bg=ilorange} \setbeamercolor*{palette sidebar secondary}{fg=ilorange} \setbeamercolor*{palette sidebar tertiary}{fg=ilblue} \setbeamercolor*{palette sidebar quaternary}{fg=ilorange} % \setbeamercolor*{titlelike}{parent=palette primary} \setbeamercolor{titlelike}{parent=palette primary,fg=ilboldblue,bg=ilorange} \setbeamercolor{frametitle}{fg=ilboldorange,bg=ilblue!80!white} \setbeamercolor{frametitle right}{fg=ilboldblue,bg=ilorange} \setbeamercolor*{separation line}{} \setbeamercolor*{fine separation line}{} \setbeamercovered{transparent} \logo{\begin{tikzpicture}% Pale figure {\node[opacity=0.8]{\IfFileExists{figures/igb_wordmark.pdf}{\includegraphics[width=2cm,height=1cm,keepaspectratio]{figures/igb_wordmark}}{}% };}% \end{tikzpicture}} } \title[DIAMOND]{DIAMOND: Fast protein alignment} \author[Don Armstrong]{Don L. Armstrong} \institute[IGB]{Institute for Genomic Biology, Computing Genomes for Reproductive Health, University of Illinois, Urbana-Champaign} \begin{document} <>= opts_chunk$set(dev="cairo_pdf",out.width="\\textwidth",out.height="0.8\\textheight",out.extra="keepaspectratio") #opts_chunk$set(cache=TRUE, autodep=TRUE) options(device = function(file, width = 8, height = 7, ...) { cairo_pdf(tempfile(), width = width, height = height, ...) }) options(digits=2) library("data.table") library("ggplot2") library("reshape2") library("grid") library("xtable") @ \IfFileExists{figures/relevant_xkcd.png}{\frame[plain]{\centering \includegraphics[width=\textwidth,height=0.8\textheight,keepaspectratio]{figures/relevant_xkcd.png} \url{https://xkcd.com/1513/}}} \frame[plain]{\titlepage} \section{The Problem} \section{The Previous Contenders} \section{Diamond Methodology} \section{Comparison} \subsection{Speed} \subsection{Accuracy} \section*{References} \begin{frame}[plain]{References} \begin{center} \mbox{}\vspace{-\baselineskip} \printbibliography[heading=none] \end{center} \end{frame} \end{document}