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adding bzip2 support in ruby
[biopieces.git] / code_ruby / test /
2013-09-18 martinahansenimplemented hamming_dist in inline C tree | commitdiff
2013-09-18 martinahansenfixed broken tests not workin with Ruby2 tree | commitdiff
2013-09-18 martinahansenadded ambiguity to hamming_distance tree | commitdiff
2013-06-21 martinahansenadded edit_distance method to seq.rb tree | commitdiff
2013-06-20 martinahansenadded levenshtein edit distance calculator tree | commitdiff
2013-06-04 martinahansenadded missing files tree | commitdiff
2013-06-04 martinahansenrevamped find_homopolymers tree | commitdiff
2013-03-16 martinahansenchanged upper/lower case output in assemble_pairs tree | commitdiff
2013-03-13 martinahansenfixed minor upcase bug in assemble.rb tree | commitdiff
2013-03-13 martinahansenupgraded assemble.rb to chose proper residue when mismatch tree | commitdiff
2013-03-12 martinahansenadded seq/assemble.rb tree | commitdiff
2013-03-11 martinahansenadded [] og []= to seq.rb tree | commitdiff
2013-03-08 martinahansenadded new Biopiece merge_pair_seq tree | commitdiff
2013-03-08 martinahansenrefactoring of ruby code converting sequences types... tree | commitdiff
2013-03-08 martinahansenadded << method to Seq.rb tree | commitdiff
2013-03-08 martinahansenrewrite of FASTQ internals tree | commitdiff
2013-02-28 martinahansenrefactoring of revcomp in seq.rb tree | commitdiff
2013-02-28 martinahansenadded Seq.shuffle method and tests tree | commitdiff
2013-02-08 martinahansenfixed quality score validity check tree | commitdiff
2013-02-04 martinahansenadded qual_valid? method to Seq.rb tree | commitdiff
2013-01-16 martinahansenfixed bad tests in match.rb tree | commitdiff
2013-01-02 martinahansenadded new match.rb and tests tree | commitdiff
2013-01-02 martinahansenadded test for align dir tree | commitdiff
2012-12-11 martinahansenadded unit test to backtrack code tree | commitdiff
2012-12-10 martinahansenfixed unit tests for backtrack.rb tree | commitdiff
2012-12-06 martinahansenfixed unit tests tree | commitdiff
2012-12-05 martinahansenrenamed patternmatcher to dynamic tree | commitdiff
2012-12-05 martinahansenfixing name space collision tree | commitdiff
2012-12-05 martinahansenrefactorying PatternMatcher to Dynamic tree | commitdiff
2012-12-05 martinahansenrefactor match->patmatch scan->patscan tree | commitdiff
2012-12-04 martinahansenfixed unit tests for patternmatcher tree | commitdiff
2012-12-04 martinahansenadded some text tree | commitdiff
2012-11-30 martinahansenfinished backtrack drama tree | commitdiff
2012-11-30 martinahansendone revert of test_backtrack.rb tree | commitdiff
2012-11-30 martinahansenreverted test_backtrack.rb to r1827 tree | commitdiff
2012-11-28 martinahansenfixing up backtrack code tree | commitdiff
2012-11-28 martinahansenadded output of mis ind and del to backtrack code tree | commitdiff
2012-09-11 martinahansenworking on pair.rb tree | commitdiff
2012-09-04 martinahansenadded test_math_aux.rb tree | commitdiff
2012-06-29 martinahansenclean-up of ruby code to remove rake warnings tree | commitdiff
2012-06-29 martinahansenadded scores_mean method to seq.rb tree | commitdiff
2012-06-08 martinahansenfixed unit tests for test_trim.rb tree | commitdiff
2012-05-24 martinahansenmoved backtrack.rb tree | commitdiff
2012-05-24 martinahansenmoved patternmatcher.rb tree | commitdiff
2012-05-24 martinahansenmoving digest.rb tree | commitdiff
2012-05-23 martinahansenrefactored SeqError/TrimError tree | commitdiff
2012-05-23 martinahansenrewrite of seq.rb and addition of seq/trim.rb tree | commitdiff
2012-04-11 martinahansenported write_fastq to ruby and allowed different encodi... tree | commitdiff
2012-02-03 martinahansenrounding up work on denoise_seq tree | commitdiff
2012-01-23 martinahansenrewrote mask_seq_hard and mask_seq_soft methods to... tree | commitdiff
2012-01-11 martinahansenadded remove_indels method tree | commitdiff
2011-12-12 martinahansensplit off locator stuff from genbank.rb to locator.rb tree | commitdiff
2011-11-23 martinahansenremoved stale unit tests from test_biopieces.rb tree | commitdiff
2011-11-23 martinahansenfixed glob unit test in test_biopieces.rb tree | commitdiff
2011-11-22 martinahansengot rid of nasty to_sym in biopieces.rb tree | commitdiff
2011-11-22 martinahansengot rid of type in filesys.rb tree | commitdiff
2011-11-17 martinahansenadded requirement of RubyInline tree | commitdiff
2011-11-16 martinahansenfixed bug in backtrack.rb tree | commitdiff
2011-11-15 martinahansenfixed digest.rb tree | commitdiff
2011-11-15 martinahansenadded backtrack.rb tree | commitdiff
2011-11-13 martinahansencleaning up digest.rb tree | commitdiff
2011-11-09 martinahansenfixed bug in seq.to_fasta tree | commitdiff
2011-11-01 martinahansenadded quality_trim to seq.rb along with unit tests tree | commitdiff
2011-11-01 martinahansenfixed unit tests for reverse and revcomp in seq.rb tree | commitdiff
2011-10-19 martinahansenrevoked to old working version of each_interval in... tree | commitdiff
2011-10-19 martinahansenspeed optimized interval_set and interval_unset in... tree | commitdiff
2011-10-17 martinahansenadded more methods to bitarray.rb tree | commitdiff
2011-10-17 martinahansenadded methods to bitarray.rb tree | commitdiff
2011-10-13 martinahansenadded Class method Seq.new_bp to seq.rb tree | commitdiff
2011-10-13 martinahansenadded to_fastq method seq.rb tree | commitdiff
2011-10-06 martinahansenfixed alignment descriptors in sam.rb tree | commitdiff
2011-09-23 martinahansenfixed mistakes in test_fasta.rb tree | commitdiff
2011-09-06 martinahansenfixed typo in test_biopieces.rb tree | commitdiff
2011-09-05 martinahansenadded hamming_distance method to seq.rb tree | commitdiff
2011-09-05 martinahansenpolishing on sam.rb tree | commitdiff
2011-09-05 martinahansenspeedup of bits.rb tree | commitdiff
2011-09-05 martinahansenpolished test_cigar.rb tree | commitdiff
2011-08-31 martinahansensam update tree | commitdiff
2011-08-29 martinahansenadded cigar.rb and test_cigar.rb tree | commitdiff
2011-08-24 martinahansenworked on unit tests for sam.rb tree | commitdiff
2011-08-24 martinahansenworked on unit tests for sam.rb tree | commitdiff
2011-08-24 martinahansenworked on unit tests for sam.rb tree | commitdiff
2011-08-24 martinahansenworked on unit tests for sam.rb tree | commitdiff
2011-08-24 martinahansenworked on unit tests for sam.rb tree | commitdiff
2011-08-23 martinahansenworked on unit tests for sam.rb tree | commitdiff
2011-08-23 martinahansenworked on unit tests for sam.rb tree | commitdiff
2011-08-23 martinahansenworked on unit tests for sam.rb tree | commitdiff
2011-08-23 martinahansenworked on unit tests for sam.rb tree | commitdiff
2011-08-22 martinahansenworked on sam.rb tree | commitdiff
2011-06-17 martinahansenadded sam.rb to ruby trunk tree | commitdiff
2011-06-13 martinahansenadded Seq.type_guess to ruby code tree | commitdiff
2011-05-23 martinahansencommitting major ruby overhaul tree | commitdiff
2011-05-19 martinahansenpreparing biopieces.rb rewrite tree | commitdiff
2011-05-13 martinahansenchanged layout of ruby source tree | commitdiff
Mirror (and my branches) of biopieces http://www.biopieces.org/