require 'test/unit'
require 'maasha/seq'
-include BackTrack
-
class BackTrackTest < Test::Unit::TestCase
def setup
# 0 1
end
def test_BackTrack_patscan_perfect_left_is_ok
- assert_equal("0:7:0:0:0:tacgatg", @seq.patscan("TACGATG").first.to_s)
+ assert_equal("0:7:tacgatg", @seq.patscan("TACGATG").first.to_s)
end
def test_BackTrack_patscan_perfect_right_is_ok
- assert_equal("13:7:0:0:0:tgcacgg", @seq.patscan("TGCACGG").first.to_s)
+ assert_equal("13:7:tgcacgg", @seq.patscan("TGCACGG").first.to_s)
end
def test_BackTrack_patscan_ambiguity_is_ok
- assert_equal("13:7:0:0:0:tgcacgg", @seq.patscan("TGCACNN").first.to_s)
+ assert_equal("13:7:tgcacgg", @seq.patscan("TGCACNN").first.to_s)
end
def test_BackTrack_patscan_pos_is_ok
- assert_equal("10:1:0:0:0:g", @seq.patscan("N", 10).first.to_s)
- assert_equal("19:1:0:0:0:g", @seq.patscan("N", 10).last.to_s)
+ assert_equal("10:1:g", @seq.patscan("N", 10).first.to_s)
+ assert_equal("19:1:g", @seq.patscan("N", 10).last.to_s)
end
def test_BackTrack_patscan_mis_left_is_ok
- assert_equal("0:7:1:0:0:tacgatg", @seq.patscan("Aacgatg", 0, 1).first.to_s)
+ assert_equal("0:7:tacgatg", @seq.patscan("Aacgatg", 0, 1).first.to_s)
end
def test_BackTrack_patscan_mis_right_is_ok
- assert_equal("13:7:1:0:0:tgcacgg", @seq.patscan("tgcacgA", 0, 1).first.to_s)
+ assert_equal("13:7:tgcacgg", @seq.patscan("tgcacgA", 0, 1).first.to_s)
end
def test_BackTrack_patscan_ins_left_is_ok
- assert_equal("0:7:0:1:0:tacgatg", @seq.patscan("Atacgatg", 0, 0, 1).first.to_s)
+ assert_equal("0:7:tacgatg", @seq.patscan("Atacgatg", 0, 0, 1).first.to_s)
end
def test_BackTrack_patscan_ins_right_is_ok
- assert_equal("13:7:0:1:0:tgcacgg", @seq.patscan("tgcacggA", 0, 0, 1).first.to_s)
+ assert_equal("13:7:tgcacgg", @seq.patscan("tgcacggA", 0, 0, 1).first.to_s)
end
def test_BackTrack_patscan_del_left_is_ok
- assert_equal("0:7:0:0:1:tacgatg", @seq.patscan("acgatg", 0, 0, 0, 1).first.to_s)
+ assert_equal("0:7:tacgatg", @seq.patscan("acgatg", 0, 0, 0, 1).first.to_s)
end
def test_BackTrack_patscan_del_right_is_ok
- assert_equal("12:8:0:0:1:atgcacgg", @seq.patscan("tgcacgg", 0, 0, 0, 1).first.to_s)
+ assert_equal("12:8:atgcacgg", @seq.patscan("tgcacgg", 0, 0, 0, 1).first.to_s)
end
def test_BackTrack_patscan_ambiguity_mis_ins_del_all_ok
- assert_equal("0:20:1:1:1:tacgatgctagcatgcacgg", @seq.patscan("tacatgcNagGatgcCacgg", 0, 1, 1, 1).first.to_s)
+ assert_equal("0:20:tacgatgctagcatgcacgg", @seq.patscan("tacatgcNagGatgcCacgg", 0, 1, 1, 1).first.to_s)
end
end