From ddbb577ec991c2a466b6c1230cc241f649753f09 Mon Sep 17 00:00:00 2001 From: martinahansen Date: Wed, 13 Mar 2013 11:46:21 +0000 Subject: [PATCH] upgraded tests of read_sff git-svn-id: http://biopieces.googlecode.com/svn/trunk@2148 74ccb610-7750-0410-82ae-013aeee3265d --- bp_test/out/read_sff.out.1 | 20 ++++++++++---------- bp_test/out/read_sff.out.2 | 2 +- bp_test/out/read_sff.out.3 | 2 +- bp_test/out/read_sff.out.4 | 2 +- 4 files changed, 13 insertions(+), 13 deletions(-) diff --git a/bp_test/out/read_sff.out.1 b/bp_test/out/read_sff.out.1 index ed88d7c..d1c35ce 100644 --- a/bp_test/out/read_sff.out.1 +++ b/bp_test/out/read_sff.out.1 @@ -5,7 +5,7 @@ CLIP_QUAL_LEFT: 4 CLIP_QUAL_RIGHT: 277 CLIP_ADAPTOR_LEFT: -1 CLIP_ADAPTOR_RIGHT: -1 -SCORES: aaa`[[[_[NNNNNNTUP[[__`abbcccddddeeeeeeedddcdcccc``bbbbaaaba_`````bbbbba````____\\\\``_aabbbbbbbba````_WVV\\bbbb``\\`^_bXbbb_`_``bbbbbaaabbb___aabbaaa[[UUUbbbZZZZZabbbbbcaa[[UUU[[[[aabbbac____aPPNNNNPP]PPPWWabaaaabbbbbbbaaabbbbbaaabbbXXX__XXXXXXXXXXUYYUUUY[UUUYUUUUYXXMMMMRKMMMMM +SCORES: BBBA<<<@11188BCBBBBCCCCCCCBBBCCCCCBBBCCC999@@99999999996::666:<666:6666:99....3,..... X_POS: 1426 Y_POS: 1923 --- @@ -16,7 +16,7 @@ CLIP_QUAL_LEFT: 4 CLIP_QUAL_RIGHT: 69 CLIP_ADAPTOR_LEFT: -1 CLIP_ADAPTOR_RIGHT: -1 -SCORES: ```````````UUU\\`[[[]Wa]XXMMMMKKIIIRKMMMMRIIYY[[QQNSQ[[^^\]]][[XXRNNMXYZ\ZZZ[[XWXX[[[\[^JJRW\\WVVVV\\ZUUUUUUOOOMMMMVZSSRSSPPPPYXXXWVVWMMMSKMMMMMMMMMSVVVXXXSUOOOO\\UUUSOOOUUWWURSSUSMMMMMRRMMMUUMLIIRPTRRLLLLOOSRRRWWUUUOOMOOOSTTTTQQQKKIIKKKQKKKKKKMMKKKKKKKKKRUUUUUUVVVVVUTTUUURRPOKKKMMMKHKHHR +SCORES: AAAAAAAAAAA666==A<<<>8B>99....,,***3,....3**::<<22/42<>><<993//.9:;=;;;<<9899<<<=>>EEFFFFFFFFFFFFFFFFFFEEEFEE>>>>EEEFFFFFFFFFFFFFFFFFEEEFFFEEEEEFFFFFFFFFFFFFFFFFFFFFFEE===EEEEFFFFFFFEEEEEEEEFFFFFFFFFFFFEEEEEEEFEEEEEEEEEEEBBBEEEEE773:@@>:11.0 X_POS: 1058 Y_POS: 1859 --- @@ -38,7 +38,7 @@ CLIP_QUAL_LEFT: 4 CLIP_QUAL_RIGHT: 253 CLIP_ADAPTOR_LEFT: -1 CLIP_ADAPTOR_RIGHT: -1 -SCORES: eeeeeeeeeeeeeeeeedddddfhhfffffhfhhhhhhhhhhhhhhhhfeeeeeeddcccceeeeeeeeeeeeecccc```ddeeeedddddddeeddddeedd```eeeeeeeeeeeeeeeeeeeeeeeecccddeeee\\\deeeeeeeeeeeeeeeeeeeeeeeeeccceeeeeeeeeeeeeeeeed\\\ccceeeeeeeeeeeedddeeeeeeeeedddddddeefeddddddddddaaaddddd____^YYY +SCORES: FFFFFFFFFFFFFFFFFEEEEEGIIGGGGGIGIIIIIIIIIIIIIIIIGFFFFFFEEDDDDFFFFFFFFFFFFFDDDDAAAEEFFFFEEEEEEEFFEEEEFFEEAAAFFFFFFFFFFFFFFFFFFFFFFFFDDDEEFFFF===EFFFFFFFFFFFFFFFFFFFFFFFFFDDDFFFFFFFFFFFFFFFFFE===DDDFFFFFFFFFFFFEEEFFFFFFFFFEEEEEEEFFGFEEEEEEEEEEBBBEEEEE@@@@?::: X_POS: 873 Y_POS: 3104 --- @@ -49,7 +49,7 @@ CLIP_QUAL_LEFT: 4 CLIP_QUAL_RIGHT: 248 CLIP_ADAPTOR_LEFT: -1 CLIP_ADAPTOR_RIGHT: -1 -SCORES: eeeeeeeeeeeeeeeeeeeeeehgffaaahheggeddddddddegggfgeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeddddeeeeeeeeeeeeeeeeeedddeeedddddeeeeeeeeeeeeeeeeeeeeeeedd\\\adeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee`_____aaaddaaadddddd[[[[dZZZZ^ +SCORES: FFFFFFFFFFFFFFFFFFFFFFIHGGBBBIIFHHFEEEEEEEEFHHHGHFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFEEEEFFFFFFFFFFFFFFFFFFEEEFFFEEEEEFFFFFFFFFFFFFFFFFFFFFFFEE===BEFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFA@@@@@BBBEEBBBEEEEEE<<<>>93333??<<=99788:998899=B=??<<<=????=>>==99997791117688>;===?????A??868AAAA???AA@@????A??<<<@=======611111.799;9266777;;?=9666666:;600...88666....+..833...//////33863---31135666-----3.66632044955.00088888550222,,,2,,,,,,,,,,0,,,1,,,,13301,,,13100!,,11-,,, X_POS: 673 Y_POS: 1172 --- @@ -71,7 +71,7 @@ CLIP_QUAL_LEFT: 4 CLIP_QUAL_RIGHT: 242 CLIP_ADAPTOR_LEFT: -1 CLIP_ADAPTOR_RIGHT: -1 -SCORES: eeeeeeeeeeeeedddeeeeeehhhhhhhhhhhhhhhhhhhhhhhhff__ff__eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeedddeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeaafddddaaadddddddeddddddddd +SCORES: FFFFFFFFFFFFFEEEFFFFFFIIIIIIIIIIIIIIIIIIIIIIIIGG@@GG@@FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFEEEFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFBBGEEEEBBBEEEEEEEFEEEEEEEEE X_POS: 662 Y_POS: 880 --- @@ -82,7 +82,7 @@ CLIP_QUAL_LEFT: 4 CLIP_QUAL_RIGHT: 261 CLIP_ADAPTOR_LEFT: -1 CLIP_ADAPTOR_RIGHT: -1 -SCORES: ```^OOO[ULLLLLLS[[IIIIII[[`````bbbccddcccddddddddbbbbbbbbbbb__^_^[TTT__`bbbb`^_^bbbbbbbbb``YY^^Y`JJJJJZZZ]]XXZ``[TTTZ``]bbb`___ZZZ_]bb````^__b_^_^^`````bbbbbbbbb```b`````bbbb``]]]bb`]YSRRR`````]QQQR]]]`]]]]`b``XXX]`XXXXYYVVMVSZZZXSNNNNKKNNVXXSSSV][VPPPYYYYYYYYYYYY +SCORES: AAA?000<6------4<<******<>99;AA<555;AA>CCCA@@@;;;@>CCAAAA?@@C@?@??AAAAACCCCCCCCCAAACAAAAACCCCAA>>>CCA>:4333AAAAA>2223>>>A>>>>ACAA999>A9999::77.74;;;94////,,//7994447><7111:::::::::::: X_POS: 324 Y_POS: 1762 --- @@ -93,7 +93,7 @@ CLIP_QUAL_LEFT: 4 CLIP_QUAL_RIGHT: 278 CLIP_ADAPTOR_LEFT: -1 CLIP_ADAPTOR_RIGHT: -1 -SCORES: eeeeeeeeeeeeeeeeeeeeeeggfffffhffffffffffefeeeefeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeddddddeeeeeeeeeeeeeeeeedddeeeeeeeeee``\\\``eeddddeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeccccdddeeeeeedccccdeeeee```ceeee````WWceeeeeccccceedddddddddddddda\[[[^]]]adaaad_____________^^^_\\\\^___\\\\\\ +SCORES: FFFFFFFFFFFFFFFFFFFFFFHHGGGGGIGGGGGGGGGGFGFFFFGFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFEEEEEEFFFFFFFFFFFFFFFFFEEEFFFFFFFFFFAA===AAFFEEEEFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFDDDDEEEFFFFFFEDDDDEFFFFFAAADFFFFAAAA88DFFFFFDDDDDFFEEEEEEEEEEEEEEB=<<>>BEBBBE@@@@@@@@@@@@@???@====?@@@====== X_POS: 173 Y_POS: 2792 --- @@ -104,7 +104,7 @@ CLIP_QUAL_LEFT: 4 CLIP_QUAL_RIGHT: 260 CLIP_ADAPTOR_LEFT: -1 CLIP_ADAPTOR_RIGHT: -1 -SCORES: cccc```ccbbb___bXXXXbbcccegeeddffffffedddecdddccccbbbccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccbbbccccccccbbbbccccccccccccccccccccccccccccccccccccccVVVVVVaccbbbcccccccccccccccccccccccccccccccccccaaaaccccccccccccaWRR\YVVVVVVYYYY +SCORES: DDDDAAADDCCC@@@C9999CCDDDFHFFEEGGGGGGFEEEFDEEEDDDDCCCDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDCCCDDDDDDDDCCCCDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD777777BDDCCCDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDBBBBDDDDDDDDDDDDB833=:777777:::: X_POS: 515 Y_POS: 2361 --- diff --git a/bp_test/out/read_sff.out.2 b/bp_test/out/read_sff.out.2 index 7f9a466..da58230 100644 --- a/bp_test/out/read_sff.out.2 +++ b/bp_test/out/read_sff.out.2 @@ -5,7 +5,7 @@ CLIP_QUAL_LEFT: 4 CLIP_QUAL_RIGHT: 277 CLIP_ADAPTOR_LEFT: -1 CLIP_ADAPTOR_RIGHT: -1 -SCORES: aaa`[[[_[NNNNNNTUP[[__`abbcccddddeeeeeeedddcdcccc``bbbbaaaba_`````bbbbba````____\\\\``_aabbbbbbbba````_WVV\\bbbb``\\`^_bXbbb_`_``bbbbbaaabbb___aabbaaa[[UUUbbbZZZZZabbbbbcaa[[UUU[[[[aabbbac____aPPNNNNPP]PPPWWabaaaabbbbbbbaaabbbbbaaabbbXXX__XXXXXXXXXXUYYUUUY[UUUYUUUUYXXMMMMRKMMMMM +SCORES: BBBA<<<@11188BCBBBBCCCCCCCBBBCCCCCBBBCCC999@@99999999996::666:<666:6666:99....3,..... X_POS: 1426 Y_POS: 1923 --- diff --git a/bp_test/out/read_sff.out.3 b/bp_test/out/read_sff.out.3 index b42ba33..c198cb9 100644 --- a/bp_test/out/read_sff.out.3 +++ b/bp_test/out/read_sff.out.3 @@ -5,7 +5,7 @@ CLIP_QUAL_LEFT: 4 CLIP_QUAL_RIGHT: 277 CLIP_ADAPTOR_LEFT: -1 CLIP_ADAPTOR_RIGHT: -1 -SCORES: aaa`[[[_[NNNNNNTUP[[__`abbcccddddeeeeeeedddcdcccc``bbbbaaaba_`````bbbbba````____\\\\``_aabbbbbbbba````_WVV\\bbbb``\\`^_bXbbb_`_``bbbbbaaabbb___aabbaaa[[UUUbbbZZZZZabbbbbcaa[[UUU[[[[aabbbac____aPPNNNNPP]PPPWWabaaaabbbbbbbaaabbbbbaaabbbXXX__XXXXXXXXXXUYYUUUY[UUUYUUUUYXXMMMMRKMMMMM +SCORES: BBBA<<<@11188BCBBBBCCCCCCCBBBCCCCCBBBCCC999@@99999999996::666:<666:6666:99....3,..... X_POS: 1426 Y_POS: 1923 --- diff --git a/bp_test/out/read_sff.out.4 b/bp_test/out/read_sff.out.4 index 386e11d..404eed8 100644 --- a/bp_test/out/read_sff.out.4 +++ b/bp_test/out/read_sff.out.4 @@ -5,7 +5,7 @@ CLIP_QUAL_LEFT: 4 CLIP_QUAL_RIGHT: 277 CLIP_ADAPTOR_LEFT: -1 CLIP_ADAPTOR_RIGHT: -1 -SCORES: [[[_[NNNNNNTUP[[__`abbcccddddeeeeeeedddcdcccc``bbbbaaaba_`````bbbbba````____\\\\``_aabbbbbbbba````_WVV\\bbbb``\\`^_bXbbb_`_``bbbbbaaabbb___aabbaaa[[UUUbbbZZZZZabbbbbcaa[[UUU[[[[aabbbac____aPPNNNNPP]PPPWWabaaaabbbbbbbaaabbbbbaaabbbXXX__XXXXXXXXXXUYYUUUY[UUUYUUUUYXXMMMMRKMMMM +SCORES: <<<@11188BCBBBBCCCCCCCBBBCCCCCBBBCCC999@@99999999996::666:<666:6666:99....3,.... X_POS: 1426 Y_POS: 1923 --- -- 2.39.2