--- /dev/null
+SEQ_NAME: test1
+SEQ: AGCTTTTCATTCTGACTGCAACGGGCAATATGTCTCTGTGTGGATTAAAAAAAGAGTGTCTGATAGCAGCTTCTGAACTGGTTACCTGCCGTGAGTAAAT
+SEQ_LEN: 100
+---
+SEQ_NAME: test2
+SEQ: TGGGCGTTCAGGTAAATAGGCGTGTGAATTTAAATAACGAGTGGTGATGCCTTGTATAACACCCTATATTCGTTCTCGAATGTCCGACGTACTATAACGT
+SEQ_LEN: 100
+---
+SEQ_NAME: test3
+SEQ: ATAGTACTACAGTAACGAAAGTCGTGGTTGTATCTCCTTTATGGCCGGTCGTTGGGAATTAAAGACTCCACGTAGACGACGATTTTTCTGAAGAGCTTTA
+SEQ_LEN: 100
--- /dev/null
+SEQ_NAME: test1
+SEQ: AGCTTTTCATTCTGACTGCAACGGGCAATATGTCTCTGTGTGGATTAAAAAAAGAGTGTCTGATAGCAGCTTCTGAACTGGTTACCTGCCGTGAGTAAAT
+SEQ_LEN: 100
+---
+SEQ_NAME: test2
+SEQ: TGGGCGTTCAGGTAAATAGGCGTGTGAATTTAAATAACGAGTGGTGATGCCTTGTATAACACCCTATATTCGTTCTCGAATGTCCGACGTACTATAACGT
+SEQ_LEN: 100
+---
+SEQ_NAME: test3
+SEQ: ATAGTACTACAGTAACGAAAGTCGTGGTTGTATCTCCTTTATGGCCGGTCGTTGGGAATTAAAGACTCCACGTAGACGACGATTTTTCTGAAGAGCTTTA
+SEQ_LEN: 100
--- /dev/null
+BEG: 5
+LEN: 5
+SEQ_NAME: test1
+---
+BEG: 7
+LEN: 5
+SEQ_NAME: test2
+---
+BEG: 9
+LEN: 5
+SEQ_NAME: test3
+---
--- /dev/null
+>test1
+AGCTTTTCATTCTGACTGCAACGGGCAATATGTCTCTGTGTGGATTAAAAAAAGAGTGTCTGATAGCAGCTTCTGAACTGGTTACCTGCCGTGAGTAAAT
+>test2
+TGGGCGTTCAGGTAAATAGGCGTGTGAATTTAAATAACGAGTGGTGATGCCTTGTATAACACCCTATATTCGTTCTCGAATGTCCGACGTACTATAACGT
+>test3
+ATAGTACTACAGTAACGAAAGTCGTGGTTGTATCTCCTTTATGGCCGGTCGTTGGGAATTAAAGACTCCACGTAGACGACGATTTTTCTGAAGAGCTTTA
--- /dev/null
+SEQ: TTCTGACTGCAACGGGCAATATGTCTCTGTGTGGATTAAAAAAAGAGTGTCTGATAGCAGCTTCTGAACTGGTTACCTGCCGTGAGTAAAT
+SEQ_LEN: 91
+SEQ_NAME: test1
+---
--- /dev/null
+SEQ: AGCTTTTCAT
+SEQ_LEN: 10
+SEQ_NAME: test1
+---
--- /dev/null
+SEQ: AGCTTTTCAT
+SEQ_LEN: 10
+SEQ_NAME: test1
+---
--- /dev/null
+SEQ: TTCTGACTGC
+SEQ_LEN: 10
+SEQ_NAME: test1
+---
--- /dev/null
+BEG: 5
+SEQ: TTCAT
+SEQ_LEN: 5
+SEQ_NAME: test1
+LEN: 5
+---
+BEG: 7
+SEQ: TCAGG
+SEQ_LEN: 5
+SEQ_NAME: test2
+LEN: 5
+---
+BEG: 9
+SEQ: CAGTA
+SEQ_LEN: 5
+SEQ_NAME: test3
+LEN: 5
+---
--- /dev/null
+#!/bin/bash
+
+source "$BP_DIR/bp_test/lib/test.sh"
+
+run "$bp -I $in -d $tmp_dir -i test -x"
+assert_no_diff "$tmp_dir/test.seq" $out.1
+clean
+
+rm -rf $tmp_dir
--- /dev/null
+#!/bin/bash
+
+source "$BP_DIR/bp_test/lib/test.sh"
+
+run_quiet "create_seq_index -I $in.1 -d $tmp_dir -i test -x"
+
+run "$bp -i $tmp_dir/test -s test1 -b 10 -O $tmp"
+assert_no_diff $tmp $out.1
+clean
+
+run "$bp -i $tmp_dir/test -s test1 -e 10 -O $tmp"
+assert_no_diff $tmp $out.2
+clean
+
+run "$bp -i $tmp_dir/test -s test1 -l 10 -O $tmp"
+assert_no_diff $tmp $out.3
+clean
+
+run "$bp -i $tmp_dir/test -s test1 -b 10 -l 10 -O $tmp"
+assert_no_diff $tmp $out.4
+clean
+
+run "$bp -I $in.2 -i $tmp_dir/test -O $tmp"
+assert_no_diff $tmp $out.5
+clean
+
+rm -rf $tmp_dir