fixed read_454 tests

git-svn-id: http://biopieces.googlecode.com/svn/trunk@2263 74ccb610-7750-0410-82ae-013aeee3265d

diff --git a/bp_test/out/read_454.out.1 b/bp_test/out/read_454.out.1
index ebcebffb94e61dd3863326f142ce7474535e1c6e..6453ff8019236509d5d92b22aa967c0ce14bf9cc 100644 (file)
--- a/bp_test/out/read_454.out.1
+++ b/bp_test/out/read_454.out.1
@@ -1,24 +1,24 @@
-SCORES: eecVVZZ\\eeeeeeeee\\\dZVRPPPPed_VVVVaceeeeeehhhhheeeeeeeeeee````eccceeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeddddeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeedddeeeeeedc_VVVVV_cdccceeeedddeeeeeeeedddddddd^^]PPPPPPPXPPPXXXXXX^][YPPPPVVVV@
+SCORES: FFD77;;==FFFFFFFFF===E;731111FE@7777BDFFFFFFIIIIIFFFFFFFFFFFAAAAFDDDFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFEEEEFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFEEEFFFFFFED@77777@DEDDDFFFFEEEFFFFFFFFEEEEEEEE??>11111119111999999?><:11117777!
 SEQ: tcagGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACCTCACTCAAAATAAATTTCACTATCCGTAAAATAAATAACTAACTATTTAAGTATCATCTCTCCCCTAATTAACAATTATAAAAATAAGAACCAATATTCGAGACAACCTAATTAATTGTGTTGTCTGTCATACTGGTTCATTTTTGTTTGACTAAATACtactctgagacacgcaacaggggataggcaaggcacacaggggatagn
 SEQ_LEN: 261
 SEQ_NAME: FQIBXOY01DP5Y0
 ---
-SCORES: ^^\\QQQQ\Q]RRRR[QV^^^^^dedaYYYd```____YaQ_[[[[\OXXUUW[UUTTQQQQMZZZZ]\YYWWS[[]]^XXXZ[[]]^[WWW^^^^\\\\\\\VQQOOOOSZRRMMMMMMMMMSMMMMMRRMMMMM@IIIMMMRMMMQQSQMMMMMMMMMMKMKMMMMMIIIIMMMMJMMMRRRMMMSSPMQSRRPPPLLLLLLLLLLRRRLLLRWWRRLKKKKKKKKKOKKKKKKKKKKKTQQQQPOKK@KK@@
+SCORES: ??==2222=2>3333<27?????EFEB:::EAAA@@@@:B2@<<<<=099668<66552222.;;;;>=::884<<>>?999;<<>>?<888????=======72200004;33.........4.....33.....!***...3...2242..........,.,.....****....+...333...441.2433111----------333---38833-,,,,,,,,,0,,,,,,,,,,,5222210,,!,,!!
 SEQ: tcagAAAAGACAAAAGAAGATTTGAAGAAATATTAAAAAGATAAAATAGGAAGTCCCCAAAGATGAAACGGGCGTCAATGAAAGGTTCTGGAGAACGGAGCAGAGTTTCTTCTCAAAAAAtcccttattaagttttntttagtaggaggtgacttaaatttagtggggcggggtaacgtaacctaaaggaagttctttttgaactaaacttcctgagacacgacaacgagggatgacaagcacagaggganagnn
 SEQ_LEN: 255
 SEQ_NAME: FQIBXOY01CJUZC
 ---
-SCORES: ddcZZZZ`cdddddc_a_dddddddUUUU_ceddddd``\\\\dddddeddddddddddddddddddddddddddddddddddddddddcc\\\\cddddddddddddddddddddddc`\\\\`ccddddddddddddddddddddccccccdddddddddcZZTTTTccdddddddddddddddddddddddddcc_____ddddddddccc___ccd@
+SCORES: EED;;;;ADEEEEED@B@EEEEEEE6666@DFEEEEEAA====EEEEEFEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEDD====DEEEEEEEEEEEEEEEEEEEEEEDA====ADDEEEEEEEEEEEEEEEEEEEEDDDDDDEEEEEEEEED;;5555DDEEEEEEEEEEEEEEEEEEEEEEEEEDD@@@@@EEEEEEEEDDD@@@DDE!
 SEQ: tcagAAATCGATGGTAAAGGTTGGCAAAAGATAAATCTTGGGGTGGTTACAACGTTACAAGATATGAAGTGGTAAATGGTAATATCGACTTAAAACAAGCAATAGAATCATCAGATAACATTTCTTTGCTAGAGTAGCACTCGAATTAGGCAGTAAGAAATTTGAAAAAGGCAtgactgagacacgcaacaggggataggcaaggcacacaggggataggn
 SEQ_LEN: 221
 SEQ_NAME: FQIBXOY01DFZRV
 ---
-SCORES: ````````^_YYY^^Z^^^^^[[^^^^^^^`]aade``ea``aad`````````a`^^_^[[[UUUUT\MWUWXV\QQOOOZYYXOOOOOOOXXKOOOOOOOOUUOOKOOOMSVWRMMMMSSMMMMMRMMMMMMMMVWXXSMMMMMMMMRPSRMMMMMMMMMXRMMMMMMSMM@@@
+SCORES: AAAAAAAA?@:::??;?????<<???????A>BBEFAAFBAABBEAAAAAAAAABA??@?<<<66665=.86897=22000;::9000000099,000000006600,000.4783....44.....3........78994........3143.........93......4..!!!
 SEQ: tcagTTATTCAAACCATTTAATTGATTTAAATCAGTAACCGCATGTTGTTTATCGTCTGCAAGTTTTTGTATCACCGTCGTAGGTTAtctttagtcttggtttaacgtaagcttgttgtcaattagttccttcgagacacgcaacagggagtagcaaggcacacagggagtagnnn
 SEQ_LEN: 176
 SEQ_NAME: FQIBXOY01A7OGA
 ---
-SCORES: bbbbbbbbbhbbbbbbbbbbbhhhhhhhhhhhhhhggghhhgggfedddb^^^[Z[[VTTT`_bbbbbbbbbbbbbbbbbbbbbbbbcbbbbbbbb``ZZZZZbbbbbbbbb^ZZZZZZ_`QQOOQQ[[VYVVYY[[\VPNNNPP[][VNNNPPLLLON[]`]VVVV[[VPPPPONVYYQQVXXYYXXX]`^^XUNNNNNNNNLUUNNNNNNNNNU\[[USSSSMVVNN@@@
+SCORES: CCCCCCCCCICCCCCCCCCCCIIIIIIIIIIIIIIHHHIIIHHHGFEEEC???<;<<7555A@CCCCCCCCCCCCCCCCCCCCCCCCDCCCCCCCCAA;;;;;CCCCCCCCC?;;;;;;@A220022<<7:77::<<=71///11<><7///11---0/<>A>7777<<711110/7::22799::999>A??96////////-66/////////6=<<64444.77//!!!
 SEQ: tcagGGTTAGCGATTCTTTCGTCGGATGCATTATCTTCAGTGGCTTACGGTCCCGAACAAATACTGATTACACTATCAGTAGTGGGTGCAGTTGCAACTTGGTATACTTTACCGATTGCAGGTGGCTGTTCTTGATCTTAtttagctgctttaatttatgtcttataggcaattatttattgcactgagacacgcaacagggagtaggcaaggcacacaggggagtaggnnn
 SEQ_LEN: 232
 SEQ_NAME: FQIBXOY01A5ATT

diff --git a/bp_test/out/read_454.out.2 b/bp_test/out/read_454.out.2
index 08844c91d86204393b58f878d5d25af6430cb87a..4917298d3268c63ded6f5549425a8b6bf175d85f 100644 (file)
--- a/bp_test/out/read_454.out.2
+++ b/bp_test/out/read_454.out.2
@@ -1,4 +1,4 @@
-SCORES: eecVVZZ\\eeeeeeeee\\\dZVRPPPPed_VVVVaceeeeeehhhhheeeeeeeeeee````eccceeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeddddeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeedddeeeeeedc_VVVVV_cdccceeeedddeeeeeeeedddddddd^^]PPPPPPPXPPPXXXXXX^][YPPPPVVVV@
+SCORES: FFD77;;==FFFFFFFFF===E;731111FE@7777BDFFFFFFIIIIIFFFFFFFFFFFAAAAFDDDFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFEEEEFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFEEEFFFFFFED@77777@DEDDDFFFFEEEFFFFFFFFEEEEEEEE??>11111119111999999?><:11117777!
 SEQ: tcagGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACCTCACTCAAAATAAATTTCACTATCCGTAAAATAAATAACTAACTATTTAAGTATCATCTCTCCCCTAATTAACAATTATAAAAATAAGAACCAATATTCGAGACAACCTAATTAATTGTGTTGTCTGTCATACTGGTTCATTTTTGTTTGACTAAATACtactctgagacacgcaacaggggataggcaaggcacacaggggatagn
 SEQ_LEN: 261
 SEQ_NAME: FQIBXOY01DP5Y0