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Regression fixed: wasn't properly merging from multiple BAMs
[bamtools.git] / src / api /
2011-10-14 derekRegression fixed: wasn't properly merging from multiple... tree | commitdiff
2011-10-13 derekAdded GetSoftClips() method to BamAlignment tree | commitdiff
2011-10-12 derekMajor speedup in SamSequenceDictionary & SamReadGroupDi... tree | commitdiff
2011-10-11 derekBug fix in BgzfStream I/O tree | commitdiff
2011-10-11 derekFixed typo tree | commitdiff
2011-10-11 derekCleanup missed by earlier "includes cleanup" commit tree | commitdiff
2011-10-11 derekRemoved index cache mode tree | commitdiff
2011-10-10 derekCleaned up intra-API includes & moved version numbers... tree | commitdiff
2011-10-10 derekUpdated Doxygen comments tree | commitdiff
2011-10-09 derekConverted intervals from 0-based, CLOSED to 0-based... tree | commitdiff
2011-10-07 derekCleaned up output/exception/asserts, etc after last... tree | commitdiff
2011-10-07 derekMerge with earlier IODevice work tree | commitdiff
2011-10-07 derekRemoved STDERR pollution by API tree | commitdiff
2011-10-04 derekFirst stab at templated tag access in BamAlignment tree | commitdiff
2011-10-04 derekRemoved duplicated method that snuck past a prior merge... tree | commitdiff
2011-10-03 derekmerge conflict tree | commitdiff
2011-10-03 derekMultiReader (&MultiMerger) now using Algorithms::Sort... tree | commitdiff
2011-09-30 derekInitial test run of new BamAlgorithms tree | commitdiff
2011-09-28 derekFix: unmapped reads now pushed to end of coordinate... tree | commitdiff
2011-09-27 derekFixed typo in error messages tree | commitdiff
2011-09-27 Derek BarnettMerge pull request #16 from gabeiscoding/patch-2 tree | commitdiff
2011-09-23 gabeiscodingIn standard indexed BAM files with with sparce coverage... tree | commitdiff
2011-09-10 derekMerge branches 'master' and 'iodevice' into iodevice tree | commitdiff
2011-09-10 derekMinor cleanup tree | commitdiff
2011-09-09 derekRemoved unnecessary peek-and-rewind behavior in BamMult... tree | commitdiff
2011-09-09 derekRemoved 'core mode' concept from BamMultiReader internals tree | commitdiff
2011-09-09 derekRefactored shared pipe/file behavior into ILocalIODevice tree | commitdiff
2011-09-09 derekMerge branches 'master' and 'iodevice' into iodevice tree | commitdiff
2011-09-09 derekBasic internal implementation of BamFile & BamPipe tree | commitdiff
2011-09-08 Derek BarnettMerge pull request #15 from gabeiscoding/patch-1 tree | commitdiff
2011-09-08 gabeiscodingBug discovered. The chunkStop was not being read from... tree | commitdiff
2011-09-07 derekAdded empty IBamIODevice.h tree | commitdiff
2011-09-02 derekAdded support for "-" as indicator for stdin/stdout tree | commitdiff
2011-07-27 derekImplemented binary search through bins in BAI tree | commitdiff
2011-06-28 Derek BarnettMerge pull request #13 from alecchap/master tree | commitdiff
2011-06-28 Alec ChapmanFix Visual Studio compiler errors. tree | commitdiff
2011-06-23 derekFixed -fPIC issue for CentOS users. tree | commitdiff
2011-06-17 derekRemoved pessimistic warnings when jumping to regions... tree | commitdiff
2011-06-17 derekAdded re-calculation of BamAlignment's BinID during tree | commitdiff
2011-05-10 derekFixed minimum offset error in BAI jumping tree | commitdiff
2011-04-27 derekRemoved debug statements that snuck into last commit tree | commitdiff
2011-04-27 derekFixed regression bug in index formats. Wasn't properly... tree | commitdiff
2011-04-22 derekAdditional attempt to force -fPIC on CentOS tree | commitdiff
2011-04-22 derekModified BamAlignment in attempt to resolve symbol... tree | commitdiff
2011-04-19 derekBrought API up to compliance with recent SAM Format... tree | commitdiff
2011-04-05 derekRolled back the BGZF buffer size to the original 64K... tree | commitdiff
2011-04-05 derekMajor performance boost to startup & random-access... tree | commitdiff
2011-03-23 derekMajor update to BamTools version 1.0 tree | commitdiff
2011-02-24 derekAttempt to fix SamHeaderVersion compile bug tree | commitdiff
2011-01-19 derekBug fix in SamHeaderVersion::SetVersion() tree | commitdiff
2011-01-19 derekMissed bug fix in BamMultiMerger in early commit. Fixed... tree | commitdiff
2011-01-17 derekAdded ExportHeader command for BamConstants.h tree | commitdiff
2011-01-17 derekRemoved SamHeaderValidatorPrivate pimpl. No real need... tree | commitdiff
2011-01-17 derekAdded UNSORTED to BamMultiReader::SortOrder types.... tree | commitdiff
2011-01-13 derekMinor formatting cleanup tree | commitdiff
2011-01-12 derekMinor update to API version 0.9.3 - addition of SamHead... tree | commitdiff
2011-01-12 derekAdded BamConstants.h tree | commitdiff
2011-01-12 derekRemoved explicit keyword from SamHeader-related object... tree | commitdiff
2011-01-12 derekUpdate to BamTools API 0.9.2 with exposure of SamHeader... tree | commitdiff
2011-01-12 derekAdded explicit copy ctors to SamHeader data structures tree | commitdiff
2010-12-24 derekAdded SAM header-handling classes for read/write/validate. tree | commitdiff
2010-12-24 derekUpdated to 0.9.1 tree | commitdiff
2010-12-24 derekImplemented proper -byname sorting (finally). tree | commitdiff
2010-12-24 derekAdded static library to build step. tree | commitdiff
2010-12-22 derekMoved BuildCharData() from BamReader to BamAlignment tree | commitdiff
2010-12-15 derekAdded creation of include/ folder in bamtools root... tree | commitdiff
2010-12-13 derekMinor formatting cleanup tree | commitdiff
2010-12-13 derekMade BamAlignment flag queries symmetrical tree | commitdiff
2010-12-07 derekFixed: handling BamAlignments with limited char data tree | commitdiff
2010-12-03 derekFixed: bug in the BamReader::Jump() codepath, specifica... tree | commitdiff
2010-11-22 derekMoved private implementation API files to internal... tree | commitdiff
2010-11-22 derekFixed BamRegion bug: previously only checked if refID... tree | commitdiff
2010-11-19 derekContinued breaking up of monolithic classes: extracted... tree | commitdiff
2010-11-19 derekExtracted BamReaderPrivate & BamWriterPrivate from... tree | commitdiff
2010-11-19 derekAdded API_EXPORT macro to classes in BamTools API tree | commitdiff
2010-11-19 derekMigrated to CMake build system. tree | commitdiff
2010-10-27 derekRemoved more non-standard STL calls from BamIndex.cpp tree | commitdiff
2010-10-27 derekMerge branch 'master' of git://github.com/ekg/bamtools tree | commitdiff
2010-10-27 derekRemoved non-standard stl::map method calls tree | commitdiff
2010-10-27 Erik GarrisonMerge branch 'master' of http://github.com/pezmaster31... tree | commitdiff
2010-10-27 Erik Garrisonclarified no-index behavior in bam multi reader tree | commitdiff
2010-10-21 DerekMerge branch 'master' of git://github.com/ekg/bamtools tree | commitdiff
2010-10-21 Erik Garrisonadd index caching mode setter to BamMultiReader tree | commitdiff
2010-10-21 DerekFixed NoIndexCaching behavior tree | commitdiff
2010-10-21 DerekImplemented index cache mode for both BAI & BTI formats tree | commitdiff
2010-10-21 DerekImplemented index cache mode for both BAI & BTI formats tree | commitdiff
2010-10-09 DerekChanged BamAlignment::SupportData from private to public. tree | commitdiff
2010-10-09 DerekFixed: bug(s) related to empty references and regions. tree | commitdiff
2010-09-20 Erik GarrisonMerge branch 'master' of http://github.com/pezmaster31... tree | commitdiff
2010-09-19 DerekRemoved a backup text file that snuck into an earlier... tree | commitdiff
2010-09-19 DerekAdded GetTagType() to BamAlignment tree | commitdiff
2010-09-18 DerekMissed api/Makefile in last commit. tree | commitdiff
2010-09-18 DerekMoved BamAlignment data structure out to its own .h... tree | commitdiff
2010-09-18 Erik GarrisonMerge branch 'master' of http://github.com/pezmaster31... tree | commitdiff
2010-09-18 DerekFixed: bug related to accessing data (or regions with... tree | commitdiff
2010-09-17 Erik GarrisonMerge branch 'master' of http://github.com/pezmaster31... tree | commitdiff
2010-09-16 DerekOn second thought, moved the (non-indexing) constants... tree | commitdiff
2010-09-16 DerekDid some housekeeping in BamAux.h - moved some constant... tree | commitdiff
2010-09-16 DerekMissed an update to BamToolsIndex code in a previous... tree | commitdiff
2010-09-15 DerekAdded option for users to specifiy half-open (1-based... tree | commitdiff
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Branch of bamtools which has rudimentary Debian packaging