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(parent: 9cf5096) | patch
Brought API up to compliance with recent SAM Format Spec (v1.4-r962)
authorderek <derekwbarnett@gmail.com>
Tue, 19 Apr 2011 23:01:01 +0000 (19:01 -0400)
committerderek <derekwbarnett@gmail.com>
Tue, 19 Apr 2011 23:01:01 +0000 (19:01 -0400)
commitcdf4bbcb19025398d429035fe672661a8c8d1a80
tree12633405754033b4eed0e69893adb2422e4ca758tree | snapshot
parent9cf50963514decd5c272f52a0a019c6289d43c63commit | diff
Brought API up to compliance with recent SAM Format Spec (v1.4-r962)

 * Added support for new "binary array" tag type
 * Added support for '=' and 'X' CIGAR ops
 * Added support for multiple PG entries in header
 * Added support for new RG fields
27 files changed:
docs/Doxyfile diff | blob | history
src/api/BamAlignment.cpp diff | blob | history
src/api/BamAlignment.h diff | blob | history
src/api/BamConstants.h diff | blob | history
src/api/CMakeLists.txt diff | blob | history
src/api/SamConstants.h diff | blob | history
src/api/SamHeader.cpp diff | blob | history
src/api/SamHeader.h diff | blob | history
src/api/SamProgram.cpp [new file with mode: 0644] blob
src/api/SamProgram.h [new file with mode: 0644] blob
src/api/SamProgramChain.cpp [new file with mode: 0644] blob
src/api/SamProgramChain.h [new file with mode: 0644] blob
src/api/SamReadGroup.cpp diff | blob | history
src/api/SamReadGroup.h diff | blob | history
src/api/SamReadGroupDictionary.cpp diff | blob | history
src/api/SamReadGroupDictionary.h diff | blob | history
src/api/SamSequence.cpp diff | blob | history
src/api/SamSequence.h diff | blob | history
src/api/SamSequenceDictionary.cpp diff | blob | history
src/api/SamSequenceDictionary.h diff | blob | history
src/api/internal/BamWriter_p.cpp diff | blob | history
src/api/internal/SamFormatParser_p.cpp diff | blob | history
src/api/internal/SamFormatPrinter_p.cpp diff | blob | history
src/api/internal/SamHeaderValidator_p.cpp diff | blob | history
src/api/internal/SamHeaderValidator_p.h diff | blob | history
src/toolkit/bamtools_resolve.cpp [new file with mode: 0644] blob
src/toolkit/bamtools_resolve.h [new file with mode: 0644] blob
Branch of bamtools which has rudimentary Debian packaging