git.donarmstrong.com Git - bamtools.git/commit

]> git.donarmstrong.com Git - bamtools.git/commit

author	derek <derekwbarnett@gmail.com>
	Wed, 23 Mar 2011 06:37:39 +0000 (02:37 -0400)
committer	derek <derekwbarnett@gmail.com>
	Wed, 23 Mar 2011 06:37:39 +0000 (02:37 -0400)
commit	8c80d760637f8df39262683cd2570f0589423d36
tree	09624102556172fc2b584bd22fedc4a5d35133c6	tree \| snapshot
parent	577b6032aa3d85616047c8aba6061dd8dad20cfc	commit \| diff

Major update to BamTools version 1.0

71 files changed:

CMakeLists.txt		diff \| blob \| history
README		diff \| blob \| history
docs/Doxyfile	[new file with mode: 0644]	blob
src/api/BGZF.cpp	[deleted file]	blob \| history
src/api/BGZF.h	[deleted file]	blob \| history
src/api/BamAlignment.cpp		diff \| blob \| history
src/api/BamAlignment.h		diff \| blob \| history
src/api/BamAux.h		diff \| blob \| history
src/api/BamConstants.h		diff \| blob \| history
src/api/BamIndex.cpp		diff \| blob \| history
src/api/BamIndex.h		diff \| blob \| history
src/api/BamMultiReader.cpp		diff \| blob \| history
src/api/BamMultiReader.h		diff \| blob \| history
src/api/BamReader.cpp		diff \| blob \| history
src/api/BamReader.h		diff \| blob \| history
src/api/BamWriter.cpp		diff \| blob \| history
src/api/BamWriter.h		diff \| blob \| history
src/api/CMakeLists.txt		diff \| blob \| history
src/api/SamHeader.cpp		diff \| blob \| history
src/api/SamHeader.h		diff \| blob \| history
src/api/SamReadGroup.cpp		diff \| blob \| history
src/api/SamReadGroup.h		diff \| blob \| history
src/api/SamReadGroupDictionary.cpp		diff \| blob \| history
src/api/SamReadGroupDictionary.h		diff \| blob \| history
src/api/SamSequence.cpp		diff \| blob \| history
src/api/SamSequence.h		diff \| blob \| history
src/api/SamSequenceDictionary.cpp		diff \| blob \| history
src/api/SamSequenceDictionary.h		diff \| blob \| history
src/api/internal/BamHeader_p.cpp		diff \| blob \| history
src/api/internal/BamHeader_p.h		diff \| blob \| history
src/api/internal/BamIndexFactory_p.cpp	[new file with mode: 0644]	blob
src/api/internal/BamIndexFactory_p.h	[new file with mode: 0644]	blob
src/api/internal/BamMultiMerger_p.h		diff \| blob \| history
src/api/internal/BamMultiReader_p.cpp		diff \| blob \| history
src/api/internal/BamMultiReader_p.h		diff \| blob \| history
src/api/internal/BamRandomAccessController_p.cpp	[new file with mode: 0644]	blob
src/api/internal/BamRandomAccessController_p.h	[new file with mode: 0644]	blob
src/api/internal/BamReader_p.cpp		diff \| blob \| history
src/api/internal/BamReader_p.h		diff \| blob \| history
src/api/internal/BamStandardIndex_p.cpp		diff \| blob \| history
src/api/internal/BamStandardIndex_p.h		diff \| blob \| history
src/api/internal/BamToolsIndex_p.cpp		diff \| blob \| history
src/api/internal/BamToolsIndex_p.h		diff \| blob \| history
src/api/internal/BamWriter_p.cpp		diff \| blob \| history
src/api/internal/BamWriter_p.h		diff \| blob \| history
src/api/internal/BgzfStream_p.cpp	[new file with mode: 0644]	blob
src/api/internal/BgzfStream_p.h	[new file with mode: 0644]	blob
src/api/internal/SamFormatParser_p.cpp		diff \| blob \| history
src/api/internal/SamFormatPrinter_p.cpp		diff \| blob \| history
src/api/internal/SamHeaderValidator_p.cpp		diff \| blob \| history
src/shared/bamtools_global.h		diff \| blob \| history
src/toolkit/CMakeLists.txt		diff \| blob \| history
src/toolkit/bamtools.cpp		diff \| blob \| history
src/toolkit/bamtools_convert.cpp		diff \| blob \| history
src/toolkit/bamtools_count.cpp		diff \| blob \| history
src/toolkit/bamtools_coverage.cpp		diff \| blob \| history
src/toolkit/bamtools_filter.cpp		diff \| blob \| history
src/toolkit/bamtools_header.cpp		diff \| blob \| history
src/toolkit/bamtools_index.cpp		diff \| blob \| history
src/toolkit/bamtools_index.h		diff \| blob \| history
src/toolkit/bamtools_merge.cpp		diff \| blob \| history
src/toolkit/bamtools_random.cpp		diff \| blob \| history
src/toolkit/bamtools_revert.cpp		diff \| blob \| history
src/toolkit/bamtools_sort.cpp		diff \| blob \| history
src/toolkit/bamtools_split.cpp		diff \| blob \| history
src/toolkit/bamtools_split.h		diff \| blob \| history
src/toolkit/bamtools_stats.cpp		diff \| blob \| history
src/toolkit/bamtools_tool.h		diff \| blob \| history
src/utils/CMakeLists.txt		diff \| blob \| history
src/utils/bamtools_utilities.cpp		diff \| blob \| history
src/utils/bamtools_utilities.h		diff \| blob \| history

Branch of bamtools which has rudimentary Debian packaging

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