// Marth Lab, Department of Biology, Boston College
// All rights reserved.
// ---------------------------------------------------------------------------
-// Last modified: 19 November 2010
+// Last modified: 26 January 2011
// ---------------------------------------------------------------------------
// Provides general utilities used by BamTools sub-tools.
// ***************************************************************************
// Parses a region string, uses reader to do validation (valid ID's, positions), stores in Region struct
// Returns success (true/false)
- static bool ParseRegionString(const std::string& regionString, const BamReader& reader, BamRegion& region);
+ static bool ParseRegionString(const std::string& regionString,
+ const BamReader& reader,
+ BamRegion& region);
// Same as above, but accepts a BamMultiReader
- static bool ParseRegionString(const std::string& regionString, const BamMultiReader& reader, BamRegion& region);
+ static bool ParseRegionString(const std::string& regionString,
+ const BamMultiReader& reader,
+ BamRegion& region);
// sequence utilities
static void Reverse(std::string& sequence);