2012-11-09 |
Kathryn Iverson | fixed rf memory issue in constructure |
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2012-11-02 |
Sarah Westcott | fix to summary.tax for 1.28.0 |
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2012-10-30 |
Sarah Westcott | Merge remote-tracking branch 'origin/master' |
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2012-10-30 |
Sarah Westcott | classify.seqs allows sequences to be in taxonomy file... |
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2012-10-26 |
Kathryn Iverson | restructuring random forest implementation |
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2012-10-26 |
Kathryn Iverson | changed random forest's inheritance |
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2012-10-26 |
Kathryn Iverson | added new class forest |
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2012-10-22 |
Sarah Westcott | Merge remote-tracking branch 'origin/master' |
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2012-10-22 |
Sarah Westcott | added sets to amova and homova commands. added oligos... |
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2012-10-22 |
Pat Schloss | Merge remote-tracking branch 'mothur/master' |
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2012-10-22 |
Pat Schloss | PDS: update citation fields |
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2012-10-09 |
Sarah Westcott | changed dups parameter to dereplicate in chimera.uchime. |
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2012-10-09 |
Sarah Westcott | added dups parameter to chimera.uchime. working on... |
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2012-10-03 |
Sarah Westcott | added zap method to classify.seqs and changed bayesian... |
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2012-10-02 |
Sarah Westcott | added classify.shared command and random forest files... |
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2012-09-25 |
Sarah Westcott | added count file to get.oturep, pre.cluster, screen... |
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2012-09-14 |
Sarah Westcott | added count file to trim.seqs, get.groups, get.lineage... |
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2012-09-12 |
Sarah Westcott | optimizing classify.seqs calculating of template probab... |
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2012-09-11 |
Sarah Westcott | added count file to get.groups and remove.groups. added... |
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2012-09-07 |
Sarah Westcott | major change to the tree class to use the count table... |
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2012-08-24 |
Sarah Westcott | added sff.multiple command. fixed issue with windows... |
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2012-08-21 |
Sarah Westcott | added oligos, pdiffs, bdiffs, ldiffs, sdiffs, tiffs... |
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2012-08-14 |
Sarah Westcott | added code to format fast files for uchime. started... |
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2012-08-13 |
Sarah Westcott | added count file to chimera.uchime. found issue with... |
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2012-08-08 |
Sarah Westcott | added count parameter to chimera.slayer command |
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2012-08-08 |
Sarah Westcott | added SequenceCountParser class to parse the count... |
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2012-08-06 |
Sarah Westcott | changes while testing 1.27 |
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2012-08-01 |
Sarah Westcott | paralellized chop.seqs |
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2012-07-31 |
Sarah Westcott | added count file to cluster.classic and cluster.split... |
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2012-07-30 |
Pat Schloss | Merge remote-tracking branch 'mothur/master' |
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2012-07-30 |
Sarah Westcott | fixed subsample name file name issue. added count... |
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2012-07-27 |
Sarah Westcott | added sparseDistanceMatrix class. Modified cluster... |
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2012-07-11 |
Sarah Westcott | working on adding count file to mgcluster |
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2012-07-11 |
Sarah Westcott | working on mgcluster count file change |
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2012-07-11 |
Sarah Westcott | Merge remote-tracking branch 'origin/master' |
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2012-07-11 |
Sarah Westcott | added debug statements to trim.seqs |
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2012-07-11 |
Kathryn Iverson | merged mgcluster. kw files added, but not working in... |
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2012-07-10 |
Sarah Westcott | changes while testing 1.26 |
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2012-07-03 |
Kathryn Iverson | fixed pointers in mgcluster |
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2012-07-03 |
Kathryn Iverson | fixed kw parameter types |
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2012-07-03 |
Kathryn Iverson | updated mgcluster to take count file |
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2012-07-03 |
Kathryn Iverson | updated parameters for kw |
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2012-07-03 |
Kathryn Iverson | Merge branch 'master' of https://github.com/mothur... |
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2012-07-03 |
Sarah Westcott | changes while testing 1.26 |
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2012-07-02 |
Kathryn Iverson | updated getgroupnames |
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2012-07-02 |
kdiverson | fixed io |
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2012-07-02 |
kdiverson | cleaned up code2 |
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2012-06-29 |
kdiverson | cleaned up code |
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2012-06-29 |
kiverson | removed comments |
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2012-06-28 |
Kathryn Iverson | updated kruskalwallis struct |
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2012-06-28 |
Kathryn Iverson | updated kruskalwallis struct |
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2012-06-28 |
Sarah Westcott | added countable class to read and store count file... |
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2012-06-28 |
Kathryn Iverson | updated kruskalwallis command |
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2012-06-26 |
Kathryn Iverson | added kruskalwallis command |
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2012-06-26 |
Sarah Westcott | Merge remote-tracking branch 'origin/master' |
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2012-06-26 |
Sarah Westcott | made make.table alias to count.seqs command. added... |
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2012-06-26 |
Kathryn Iverson | removed print statements from testing |
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2012-06-22 |
Kathryn Iverson | added large parameter to mgcluster along with new rabun... |
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2012-06-22 |
kiverson | removed comments |
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2012-06-21 |
Kathryn Iverson | edited createRabund function |
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2012-06-20 |
Kathryn Iverson | edited createRabund function |
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2012-06-20 |
Kathryn Iverson | added createRabund function to mgcluster |
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2012-06-20 |
Kathryn Iverson | added ifelse for rabund |
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2012-06-20 |
Kathryn Iverson | testing new devel branch |
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2012-06-19 |
Sarah Westcott | added phylip as output file type for commands that... |
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2012-06-19 |
Sarah Westcott | added load.logfile command. changed summary.single... |
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2012-06-12 |
Sarah Westcott | changed reading of name file to use buffered reads... |
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2012-06-11 |
Sarah Westcott | fixed bug with dist.shared subsampling. added mode... |
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2012-06-07 |
Pat Schloss | Merge remote-tracking branch 'mothur/master' |
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2012-06-07 |
Pat Schloss | dunno |
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2012-06-05 |
Sarah Westcott | added forward and reverse barcodes to trim.seqs to... |
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2012-06-04 |
Sarah Westcott | fixed classify.seqs output file name - had issue if... |
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2012-06-04 |
Sarah Westcott | added check to make sure shhh.flows child processes... |
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2012-05-31 |
Pat Schloss | Merge remote-tracking branch 'mothur/master' |
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2012-05-31 |
Pat Schloss | change to .gitignore |
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2012-05-29 |
Sarah Westcott | added code to check path for uchime and catchall execut... |
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2012-05-24 |
Sarah Westcott | forced rarefaction.single to output ending line for... |
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2012-05-24 |
Sarah Westcott | fixed bug in sffinfo when ~ was used in the sff filenam... |
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2012-05-23 |
Sarah Westcott | added metadata parameter to otu.association |
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2012-05-23 |
Sarah Westcott | added design and sets parameters to the rarefaction... |
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2012-05-22 |
Sarah Westcott | added debug output classify.seqs. worked on make.contig... |
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2012-05-21 |
Sarah Westcott | added get.otulabels and remove.otulabels commands per... |
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2012-05-18 |
Sarah Westcott | added threshold parameter to make.contigs command. |
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2012-05-18 |
Sarah Westcott | Merge remote-tracking branch 'origin/master' |
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2012-05-18 |
Sarah Westcott | added check to cluster.classic to make sure file type... |
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2012-05-16 |
Kathryn Iverson | added check for numOTUS, will skip if < 2. |
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2012-05-16 |
Kathryn Iverson | Merge branch 'master' of https://github.com/mothur... |
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2012-05-16 |
Kathryn Iverson | updated output to include standard deviation |
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2012-05-16 |
Kathryn Iverson | replaced p-value with zscore for lookup in ztable. |
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2012-05-16 |
Sarah Westcott | added classic parameter to cluster.split. working... |
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2012-05-15 |
Kathryn Iverson | added functions to calculate standard deviation and... |
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2012-05-15 |
Sarah Westcott | added list.labels command. started work on make.contigs... |
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2012-05-14 |
Sarah Westcott | last checkin for 1.25.1 |
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2012-05-14 |
Sarah Westcott | fixed bug in make.biom that occurred if some taxonomies... |
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2012-05-14 |
Sarah Westcott | Merge remote-tracking branch 'origin/master' |
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2012-05-14 |
Sarah Westcott | added debug info to engines function to get mother... |
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2012-05-14 |
John Westcott | trying to clean up project files path issues |
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2012-05-14 |
Pat Schloss | fixing pbxproj |
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2012-05-14 |
Pat Schloss | Merge remote-tracking branch 'mothur/master' |
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2012-05-14 |
Pat Schloss | small mods to sensspec command |
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next |