]>
git.donarmstrong.com Git - biopieces.git/log
martinahansen [Mon, 6 May 2013 09:17:39 +0000 (09:17 +0000)]
fixed QA_Illumina_report.rb encoding
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2169
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Mon, 29 Apr 2013 09:52:27 +0000 (09:52 +0000)]
fixed missing BP_TMP dir feature
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2167
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Thu, 18 Apr 2013 08:17:30 +0000 (08:17 +0000)]
fixed divide bug in compute
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2162
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Thu, 11 Apr 2013 17:29:24 +0000 (17:29 +0000)]
fixed bug in index_vals
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2157
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Thu, 11 Apr 2013 17:10:35 +0000 (17:10 +0000)]
added index_vals biopiece
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2155
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Wed, 20 Mar 2013 06:42:06 +0000 (06:42 +0000)]
corrected pcr_seq revcomp of patterns
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2153
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Sat, 16 Mar 2013 18:47:24 +0000 (18:47 +0000)]
changed upper/lower case output in assemble_pairs
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2151
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Wed, 13 Mar 2013 12:03:13 +0000 (12:03 +0000)]
dropped pandaseq requirement
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2150
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Wed, 13 Mar 2013 11:51:30 +0000 (11:51 +0000)]
fixed minor upcase bug in assemble.rb
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2149
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Wed, 13 Mar 2013 11:46:21 +0000 (11:46 +0000)]
upgraded tests of read_sff
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2148
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Wed, 13 Mar 2013 11:41:49 +0000 (11:41 +0000)]
finish assemble_pairs revamp
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2147
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Wed, 13 Mar 2013 11:33:46 +0000 (11:33 +0000)]
assemble_pairs revamp
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2145
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Wed, 13 Mar 2013 10:30:54 +0000 (10:30 +0000)]
added comments to code
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2142
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Wed, 13 Mar 2013 10:20:58 +0000 (10:20 +0000)]
added name check to assemble_pairs2
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2141
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Wed, 13 Mar 2013 09:59:23 +0000 (09:59 +0000)]
added check for minimum seq length
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2140
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Wed, 13 Mar 2013 09:58:08 +0000 (09:58 +0000)]
added check for minimum seq length
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2139
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Wed, 13 Mar 2013 09:25:30 +0000 (09:25 +0000)]
fixed defaults and key names
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2138
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Wed, 13 Mar 2013 09:12:52 +0000 (09:12 +0000)]
upgraded assemble.rb to chose proper residue when mismatch
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2137
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Wed, 13 Mar 2013 06:58:56 +0000 (06:58 +0000)]
added hacky thing to avoid warning from zlib
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2136
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Tue, 12 Mar 2013 21:33:40 +0000 (21:33 +0000)]
added keys to assemble_pairs2
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2135
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Tue, 12 Mar 2013 18:13:17 +0000 (18:13 +0000)]
added assemble_pairs2
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2134
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Tue, 12 Mar 2013 18:12:29 +0000 (18:12 +0000)]
added seq/assemble.rb
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2133
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Tue, 12 Mar 2013 10:44:52 +0000 (10:44 +0000)]
fixed score base bug in sff.rb
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2132
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Mon, 11 Mar 2013 18:15:08 +0000 (18:15 +0000)]
added word_size switch to blast_seq_pair
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2127
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Mon, 11 Mar 2013 14:49:14 +0000 (14:49 +0000)]
changed blast_seq_pair to do multiple pairs
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2125
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Mon, 11 Mar 2013 06:52:14 +0000 (06:52 +0000)]
added [] og []= to seq.rb
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2124
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Fri, 8 Mar 2013 18:42:08 +0000 (18:42 +0000)]
added split_pair_seq biopiece
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2122
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Fri, 8 Mar 2013 14:41:32 +0000 (14:41 +0000)]
added new Biopiece merge_pair_seq
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2121
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Fri, 8 Mar 2013 14:39:37 +0000 (14:39 +0000)]
added new Biopiece merge_pair_seq
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2120
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Fri, 8 Mar 2013 13:10:10 +0000 (13:10 +0000)]
dropped cat_seq Biopieces since join_seq exists
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2118
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Fri, 8 Mar 2013 12:35:17 +0000 (12:35 +0000)]
added pair-end power to read_fastq
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2117
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Fri, 8 Mar 2013 12:24:12 +0000 (12:24 +0000)]
added eof? method to filesys.rb
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2115
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Fri, 8 Mar 2013 10:43:05 +0000 (10:43 +0000)]
refactoring of ruby code converting sequences types to symbols
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2114
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Fri, 8 Mar 2013 10:09:02 +0000 (10:09 +0000)]
added << method to Seq.rb
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2113
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Fri, 8 Mar 2013 09:29:16 +0000 (09:29 +0000)]
rewrite of FASTQ internals
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2111
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Fri, 1 Mar 2013 11:23:46 +0000 (11:23 +0000)]
fixed bug in plot_scores
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2110
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Thu, 28 Feb 2013 14:34:26 +0000 (14:34 +0000)]
finished refactoring s/has_key?/[]/
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2109
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Thu, 28 Feb 2013 14:17:03 +0000 (14:17 +0000)]
refactoring of ruby code s/has_key?/[]/
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2108
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Thu, 28 Feb 2013 13:56:09 +0000 (13:56 +0000)]
fixed global SCORE_BASE in mean_scores
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2107
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Thu, 28 Feb 2013 12:36:22 +0000 (12:36 +0000)]
refactoring of revcomp in seq.rb
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2106
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Thu, 28 Feb 2013 10:21:22 +0000 (10:21 +0000)]
added Seq.shuffle method and tests
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2105
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Thu, 28 Feb 2013 08:46:32 +0000 (08:46 +0000)]
updated find_SNPs tests
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2104
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Mon, 25 Feb 2013 19:17:08 +0000 (19:17 +0000)]
fixed SCORE_BASE global var
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2101
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Thu, 21 Feb 2013 18:57:55 +0000 (18:57 +0000)]
added coverage to find_SNPs
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2100
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Thu, 21 Feb 2013 13:46:28 +0000 (13:46 +0000)]
fixed nasty bug in grab where -E and pattern 0 failed
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2099
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Thu, 21 Feb 2013 13:45:21 +0000 (13:45 +0000)]
fixed nasty bug in grab where -E and pattern 0 failed
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2098
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Wed, 20 Feb 2013 10:07:15 +0000 (10:07 +0000)]
made find_adaptor ignore too short sequences
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2096
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Tue, 19 Feb 2013 14:08:15 +0000 (14:08 +0000)]
added write_sam biopiece
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2095
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Tue, 19 Feb 2013 13:51:25 +0000 (13:51 +0000)]
disabled encoding validity check
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2094
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Tue, 19 Feb 2013 13:40:46 +0000 (13:40 +0000)]
added provisional write sam support
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2093
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Tue, 19 Feb 2013 13:40:21 +0000 (13:40 +0000)]
polished read_sam
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2092
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Fri, 8 Feb 2013 07:48:39 +0000 (07:48 +0000)]
fixed quality score validity check
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2091
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Wed, 6 Feb 2013 14:23:13 +0000 (14:23 +0000)]
disable validity check
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2090
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Mon, 4 Feb 2013 13:50:07 +0000 (13:50 +0000)]
added quality score check to read_fastq
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2089
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Mon, 4 Feb 2013 13:37:39 +0000 (13:37 +0000)]
added qual_valid? method to Seq.rb
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2088
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Sat, 2 Feb 2013 21:37:11 +0000 (21:37 +0000)]
fixed minor bug in error handling
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2087
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Tue, 22 Jan 2013 13:52:35 +0000 (13:52 +0000)]
fixed axis titles
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2086
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Tue, 22 Jan 2013 11:50:56 +0000 (11:50 +0000)]
added plot_stacked_histogram biopiece
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2085
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Mon, 21 Jan 2013 13:45:03 +0000 (13:45 +0000)]
added pandaseq prerequisite
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2084
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Mon, 21 Jan 2013 13:42:13 +0000 (13:42 +0000)]
added tests for assemble_pairs biopiece
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2083
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Mon, 21 Jan 2013 13:37:11 +0000 (13:37 +0000)]
added assemble_pairs biopiece
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2081
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Sun, 20 Jan 2013 19:03:41 +0000 (19:03 +0000)]
added substitute_vals biopiece
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2079
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Wed, 16 Jan 2013 09:47:10 +0000 (09:47 +0000)]
fixed bad tests in match.rb
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2078
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Tue, 15 Jan 2013 12:16:44 +0000 (12:16 +0000)]
added png term to plot_matches
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2076
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Mon, 14 Jan 2013 18:33:13 +0000 (18:33 +0000)]
added tests for create_seq_index and get_seq
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2075
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Mon, 14 Jan 2013 17:38:28 +0000 (17:38 +0000)]
fixed apparent change in Carp yielding an extra . after error msg
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2074
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Mon, 14 Jan 2013 17:27:06 +0000 (17:27 +0000)]
removed error check
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2072
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Fri, 11 Jan 2013 14:36:57 +0000 (14:36 +0000)]
added bowtie2 biopieces
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2071
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Wed, 9 Jan 2013 14:24:28 +0000 (14:24 +0000)]
adding kmer to contigs
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2069
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Wed, 9 Jan 2013 11:20:20 +0000 (11:20 +0000)]
fixed up assemble_seq_velvet
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2067
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Wed, 9 Jan 2013 10:19:07 +0000 (10:19 +0000)]
rewrote assemble_seq_velvet
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2066
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Wed, 9 Jan 2013 09:38:45 +0000 (09:38 +0000)]
fixed pair end issue
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2065
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Wed, 9 Jan 2013 09:15:41 +0000 (09:15 +0000)]
set cutoff to auto in velvet
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2064
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Wed, 9 Jan 2013 09:10:53 +0000 (09:10 +0000)]
renamed assemle_seq_idba assemble_seq_idba
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2060
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Wed, 9 Jan 2013 09:09:55 +0000 (09:09 +0000)]
renamed assemble_seq_idba_ud assemle_seq_idba
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2059
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Wed, 9 Jan 2013 09:09:18 +0000 (09:09 +0000)]
removed old assemle_seq_idba
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2058
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Fri, 4 Jan 2013 10:53:03 +0000 (10:53 +0000)]
fixed to_i bug in pcr_seq
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2057
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Fri, 4 Jan 2013 10:25:24 +0000 (10:25 +0000)]
updated report
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2056
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Fri, 4 Jan 2013 10:23:15 +0000 (10:23 +0000)]
updated pcr_seq and added tests
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2054
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Thu, 3 Jan 2013 15:15:12 +0000 (15:15 +0000)]
polished pairwise alignment code
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2053
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Wed, 2 Jan 2013 11:12:51 +0000 (11:12 +0000)]
added new match.rb and tests
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2052
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Wed, 2 Jan 2013 11:10:11 +0000 (11:10 +0000)]
added new match.rb and tests
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2051
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Wed, 2 Jan 2013 09:51:15 +0000 (09:51 +0000)]
added test for align dir
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2050
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Wed, 2 Jan 2013 09:49:50 +0000 (09:49 +0000)]
renaming match.rb to matches.rb
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2049
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Wed, 2 Jan 2013 09:40:08 +0000 (09:40 +0000)]
moved mum.rb
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2048
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Thu, 20 Dec 2012 21:25:23 +0000 (21:25 +0000)]
clearnup of pair align code
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2047
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Thu, 13 Dec 2012 10:44:37 +0000 (10:44 +0000)]
fixed minor bug in grab for exact_in where no key would give undef warning
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2045
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Wed, 12 Dec 2012 08:38:37 +0000 (08:38 +0000)]
fixed QA_Illumina_report.rb SEQ_LEN > 20
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2044
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Wed, 12 Dec 2012 08:33:01 +0000 (08:33 +0000)]
changed to new find_adaptor
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2043
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Tue, 11 Dec 2012 08:52:30 +0000 (08:52 +0000)]
added unit test to backtrack code
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2042
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Mon, 10 Dec 2012 18:38:02 +0000 (18:38 +0000)]
removed debug code from find_adaptor
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2041
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Mon, 10 Dec 2012 18:34:35 +0000 (18:34 +0000)]
unrolling new find_adaptor
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2039
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Mon, 10 Dec 2012 18:28:52 +0000 (18:28 +0000)]
fixed bug in backtrack.rb
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2038
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Mon, 10 Dec 2012 08:42:53 +0000 (08:42 +0000)]
fixed unit tests for backtrack.rb
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2037
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Thu, 6 Dec 2012 11:15:19 +0000 (11:15 +0000)]
fixed unit tests
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2036
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Wed, 5 Dec 2012 10:24:11 +0000 (10:24 +0000)]
renamed patternmatcher to dynamic
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2035
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Wed, 5 Dec 2012 10:22:29 +0000 (10:22 +0000)]
renamed patternmatcher to dynamic
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2034
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Wed, 5 Dec 2012 10:22:01 +0000 (10:22 +0000)]
fixing name space collision
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2033
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Wed, 5 Dec 2012 10:21:36 +0000 (10:21 +0000)]
refactorying PatternMatcher to Dynamic
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2032
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Wed, 5 Dec 2012 10:20:05 +0000 (10:20 +0000)]
renamed patternmatcher to dynamic
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2031
74ccb610-7750-0410-82ae-
013aeee3265d