]> git.donarmstrong.com Git - biopieces.git/commitdiff
fixed QA_Illumina_report.rb SEQ_LEN > 20
authormartinahansen <martinahansen@74ccb610-7750-0410-82ae-013aeee3265d>
Wed, 12 Dec 2012 08:38:37 +0000 (08:38 +0000)
committermartinahansen <martinahansen@74ccb610-7750-0410-82ae-013aeee3265d>
Wed, 12 Dec 2012 08:38:37 +0000 (08:38 +0000)
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2044 74ccb610-7750-0410-82ae-013aeee3265d

bp_scripts/QA_Illumina_report.rb

index d50238509b04e6e47900762cb9fa3d387a91cc8d..74d720a2c0a2e0334c8a94e799ec31d28e65af1e 100755 (executable)
@@ -70,7 +70,7 @@ system(
    progress_meter |
    analyze_vals -k SEQ -o #{analyze_vals_file} |
    trim_seq -l 3 -m 25 |
-   grab -e 'SEQ_LEN > 0' |
+   grab -e 'SEQ_LEN > 20' |
    analyze_vals -k SEQ -o #{analyze_vals_trim_file} |
    find_adaptor -l 6 -L 6 -f ACACGACGCTCTTCCGATCT -r AGATCGGAAGAGCACACGTC |
    clip_adaptor |