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Removed unnecessary peek-and-rewind behavior in BamMultiReader
[bamtools.git] / src /
2010-09-19 DerekAdded GetTagType() to BamAlignment tree | commitdiff
2010-09-18 DerekUpdated to match new BamAlignment.h includes tree | commitdiff
2010-09-18 DerekMissed api/Makefile in last commit. tree | commitdiff
2010-09-18 DerekMoved BamAlignment data structure out to its own .h... tree | commitdiff
2010-09-18 Erik GarrisonMerge branch 'master' of http://github.com/pezmaster31... tree | commitdiff
2010-09-18 DerekFixed: bug related to accessing data (or regions with... tree | commitdiff
2010-09-17 Erik GarrisonMerge branch 'master' of http://github.com/pezmaster31... tree | commitdiff
2010-09-16 DerekOn second thought, moved the (non-indexing) constants... tree | commitdiff
2010-09-16 DerekDid some housekeeping in BamAux.h - moved some constant... tree | commitdiff
2010-09-16 DerekMissed an update to BamToolsIndex code in a previous... tree | commitdiff
2010-09-16 DerekAdded new PileupEngine to the toolkit. This is used... tree | commitdiff
2010-09-15 DerekAdded option for users to specifiy half-open (1-based... tree | commitdiff
2010-09-13 Erik GarrisonMerge branch 'master' of http://github.com/pezmaster31... tree | commitdiff
2010-09-13 DerekFixed off-by-one error in BamAlignment::GetEndPosition() tree | commitdiff
2010-09-11 Erik Garrisonupdated debugging output in BamIndex, seek vs. calculat... tree | commitdiff
2010-09-11 Erik GarrisonAdded more verbose debugging output to BamMultiReader... tree | commitdiff
2010-09-10 DerekReimplemented BamToolsIndex for bug fix and performance... tree | commitdiff
2010-09-10 DerekRemoved debug output statement that slipped into last... tree | commitdiff
2010-09-10 DerekReorganizing index/jumping calls. Now all BamReader... tree | commitdiff
2010-09-08 Erik Garrisonprefer bamtools index in BamMultiReader tree | commitdiff
2010-09-08 Erik GarrisonMerge branch 'master' of git://github.com/pezmaster31... tree | commitdiff
2010-09-07 DerekRelicensed the source code used in bamtools_options... tree | commitdiff
2010-09-07 DerekDocumentation update tree | commitdiff
2010-09-07 DerekAdded -region option to bamtools_merge tree | commitdiff
2010-09-07 DerekPreviously missed a line in BamReader.cpp with the... tree | commitdiff
2010-09-03 DerekLarge-scale API indexing re-organization: tree | commitdiff
2010-09-03 DerekModified Utilities::FileExists() so it doesnt rely... tree | commitdiff
2010-09-03 DerekCleaned up index file handling throughout toolkit.... tree | commitdiff
2010-09-03 DerekAdded IsIndexLoaded() public method to BamReader. Allow... tree | commitdiff
2010-09-02 DerekModified help description for -bti option tree | commitdiff
2010-09-01 DerekAdded uncompressed output as default behavior for Filte... tree | commitdiff
2010-08-30 DerekPosted implementation of FilterTool. tree | commitdiff
2010-08-30 DerekMinor formatting & commenting update tree | commitdiff
2010-08-30 DerekUpdated bamtools_utilities with #defines tree | commitdiff
2010-08-30 DerekUpdating bamtools_options tree | commitdiff
2010-08-30 DerekAdded bamtools_filter_engine.* tree | commitdiff
2010-08-30 DerekForgot to add jsoncpp/json.h in a previous commit tree | commitdiff
2010-08-30 DerekFixed: Calls to GetEndPosition() rely on CIGAR data... tree | commitdiff
2010-08-30 DerekAdded JsonCPP code to repo. Will be used by FilterTool... tree | commitdiff
2010-08-20 Erik Garrisonchange printf's to fprint(stderr, tree | commitdiff
2010-08-18 DerekMissed a Makefile in last commit - just adding header... tree | commitdiff
2010-08-18 DerekAdded simple header comments to all Makefiles, to help... tree | commitdiff
2010-08-18 DerekReorganized source tree & build system tree | commitdiff
Branch of bamtools which has rudimentary Debian packaging