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(parent: 02a90ba) | patch
Added new PileupEngine to the toolkit. This is used by CoverageTool as well as Conver...
authorDerek <derekwbarnett@gmail.com>
Thu, 16 Sep 2010 05:37:28 +0000 (01:37 -0400)
committerDerek <derekwbarnett@gmail.com>
Thu, 16 Sep 2010 05:37:28 +0000 (01:37 -0400)
commit5f5d20647f918069e0b6dbc055ea184c37bd1196
treedce23de2ead0a667f7b9eaa04963759fa1e13a1etree | snapshot
parent02a90ba6b35ce74cbb5e9b49403c6f1cb046afaecommit | diff
Added new PileupEngine to the toolkit. This is used by CoverageTool as well as ConvertTool for pileup format. Pileup conversion output before was buggy and overall incorrect.  Now should match SAMtools output to the best of my knowledge
src/toolkit/bamtools_convert.cpp diff | blob | history
src/toolkit/bamtools_coverage.cpp diff | blob | history
src/toolkit/bamtools_coverage.h diff | blob | history
src/utils/Makefile diff | blob | history
src/utils/bamtools_pileup.cpp [deleted file] blob | history
src/utils/bamtools_pileup.h [deleted file] blob | history
src/utils/bamtools_pileup_engine.cpp [new file with mode: 0644] blob
src/utils/bamtools_pileup_engine.h [new file with mode: 0644] blob
Branch of bamtools which has rudimentary Debian packaging