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Cleanup missed by earlier "includes cleanup" commit
[bamtools.git] / src / api / internal /
2011-10-11 derekRemoved index cache mode tree | commitdiff
2011-10-10 derekCleaned up intra-API includes & moved version numbers... tree | commitdiff
2011-10-09 derekConverted intervals from 0-based, CLOSED to 0-based... tree | commitdiff
2011-10-07 derekCleaned up output/exception/asserts, etc after last... tree | commitdiff
2011-10-07 derekMerge with earlier IODevice work tree | commitdiff
2011-10-07 derekRemoved STDERR pollution by API tree | commitdiff
2011-10-04 derekRemoved duplicated method that snuck past a prior merge... tree | commitdiff
2011-10-03 derekmerge conflict tree | commitdiff
2011-10-03 derekMultiReader (&MultiMerger) now using Algorithms::Sort... tree | commitdiff
2011-09-28 derekFix: unmapped reads now pushed to end of coordinate... tree | commitdiff
2011-09-27 derekFixed typo in error messages tree | commitdiff
2011-09-27 Derek BarnettMerge pull request #16 from gabeiscoding/patch-2 tree | commitdiff
2011-09-23 gabeiscodingIn standard indexed BAM files with with sparce coverage... tree | commitdiff
2011-09-10 derekMerge branches 'master' and 'iodevice' into iodevice tree | commitdiff
2011-09-10 derekMinor cleanup tree | commitdiff
2011-09-09 derekRemoved unnecessary peek-and-rewind behavior in BamMult... tree | commitdiff
2011-09-09 derekRemoved 'core mode' concept from BamMultiReader internals tree | commitdiff
2011-09-09 derekRefactored shared pipe/file behavior into ILocalIODevice tree | commitdiff
2011-09-09 derekMerge branches 'master' and 'iodevice' into iodevice tree | commitdiff
2011-09-09 derekBasic internal implementation of BamFile & BamPipe tree | commitdiff
2011-09-08 Derek BarnettMerge pull request #15 from gabeiscoding/patch-1 tree | commitdiff
2011-09-08 gabeiscodingBug discovered. The chunkStop was not being read from... tree | commitdiff
2011-09-02 derekAdded support for "-" as indicator for stdin/stdout tree | commitdiff
2011-07-27 derekImplemented binary search through bins in BAI tree | commitdiff
2011-06-17 derekRemoved pessimistic warnings when jumping to regions... tree | commitdiff
2011-06-17 derekAdded re-calculation of BamAlignment's BinID during tree | commitdiff
2011-05-10 derekFixed minimum offset error in BAI jumping tree | commitdiff
2011-04-27 derekRemoved debug statements that snuck into last commit tree | commitdiff
2011-04-27 derekFixed regression bug in index formats. Wasn't properly... tree | commitdiff
2011-04-19 derekBrought API up to compliance with recent SAM Format... tree | commitdiff
2011-04-05 derekMajor performance boost to startup & random-access... tree | commitdiff
2011-03-23 derekMajor update to BamTools version 1.0 tree | commitdiff
2011-02-24 derekAttempt to fix SamHeaderVersion compile bug tree | commitdiff
2011-01-19 derekBug fix in SamHeaderVersion::SetVersion() tree | commitdiff
2011-01-19 derekMissed bug fix in BamMultiMerger in early commit. Fixed... tree | commitdiff
2011-01-17 derekRemoved SamHeaderValidatorPrivate pimpl. No real need... tree | commitdiff
2011-01-17 derekAdded UNSORTED to BamMultiReader::SortOrder types.... tree | commitdiff
2011-01-13 derekMinor formatting cleanup tree | commitdiff
2011-01-12 derekMinor update to API version 0.9.3 - addition of SamHead... tree | commitdiff
2011-01-12 derekRemoved explicit keyword from SamHeader-related object... tree | commitdiff
2011-01-12 derekUpdate to BamTools API 0.9.2 with exposure of SamHeader... tree | commitdiff
2010-12-24 derekAdded SAM header-handling classes for read/write/validate. tree | commitdiff
2010-12-24 derekImplemented proper -byname sorting (finally). tree | commitdiff
2010-12-22 derekMoved BuildCharData() from BamReader to BamAlignment tree | commitdiff
2010-12-13 derekMinor formatting cleanup tree | commitdiff
2010-12-07 derekFixed: handling BamAlignments with limited char data tree | commitdiff
2010-12-03 derekFixed: bug in the BamReader::Jump() codepath, specifica... tree | commitdiff
2010-11-22 derekMoved private implementation API files to internal... tree | commitdiff
Branch of bamtools which has rudimentary Debian packaging