2009-09-22 |
westcott | removed line option |
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2009-08-01 |
westcott | bugs fixes while testing for 1.5 release |
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2009-06-25 |
westcott | added logfile feature |
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2009-06-18 |
westcott | fixed some bugs |
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2009-06-14 |
pschloss | merged pat's trim seqs edits with sarah's major overhau... |
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2009-06-12 |
westcott | broke up globaldata and moved error checking and help... |
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2009-06-08 |
westcott | added heatmap.sim command and changed heatmap to heatma... |
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2009-06-08 |
westcott | dist.seqs can now use n processors, and only outputs... |
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2009-06-07 |
pschloss | modified trim.seqs command |
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2009-06-06 |
pschloss | added trim.seqs command |
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2009-06-05 |
westcott | line and label no longer persist between commands.... |
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2009-06-04 |
westcott | removed readseqs, readfasta, readnexus, readclustal... |
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2009-06-04 |
westcott | fixed some bugs |
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2009-06-04 |
pschloss | pat's edits of screen.seqs and summary.seqs |
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2009-06-03 |
pschloss | added screen.seqs command - pds |
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2009-06-02 |
westcott | added smart distance feature and optimized all commands... |
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2009-06-01 |
westcott | fixed bug for windows users with read.dist |
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2009-05-27 |
westcott | fixed multiple bugs for 1.4 release |
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2009-05-24 |
pschloss | This contains Pat's bug fixes and updates. It represen... |
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2009-05-22 |
westcott | changed defaults for filter.seqs() |
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2009-05-22 |
westcott | changed defaults in allign.seqs command |
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2009-05-21 |
westcott | fixed bugs |
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2009-05-21 |
westcott | added ability to put # in front of any line in the... |
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2009-05-21 |
westcott | added dist.shared command |
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2009-05-20 |
westcott | added get.repseqs command, started matrix output command |
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2009-05-18 |
westcott | added shen calculator |
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2009-05-18 |
westcott | added boneh, efron, and solow calculators |
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2009-05-18 |
westcott | added alignment code |
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2009-05-14 |
westcott | fixed bug in venn command |
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2009-05-13 |
westcott | changed name of distance command to dist.seqs |
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2009-05-13 |
westcott | changed all shared commands so that they read the share... |
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2009-05-08 |
westcott | altered venn command to make use of sharedchao for... |
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2009-05-04 |
ryabin | *** empty log message *** |
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2009-05-04 |
westcott | fixed xp user bug with rarefact commands and cluster... |
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2009-04-23 |
pschloss | more calculator edits and added coverage and whittaker |
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2009-04-17 |
westcott | added bootstrap.shared command and fixed some bugs... |
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2009-04-14 |
westcott | removed "shared" from some of the calculator names... |
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2009-04-14 |
westcott | added log10 and log2 scalers for heatmap |
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2009-04-14 |
westcott | started shared utilities, updates to venn and heatmap... |
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2009-04-08 |
westcott | fixed bug in read.tree updates help and validparameters... |
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2009-04-03 |
westcott | venn command with up to 4 groups using sharedsobs,... |
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2009-03-30 |
westcott | made sorting optional but sort by default, in case... |
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2009-03-27 |
westcott | added heatmap command |
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2009-03-27 |
ryabin | added the Calculators Thomas made in the fall. Added... |
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2009-03-18 |
westcott | working on libshuff |
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2009-03-09 |
westcott | fixed bug with line and label parameters and added... |
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2009-03-09 |
westcott | deleted read.shared command and added its functionality... |
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2009-03-09 |
westcott | fixed memory issue with cluster command |
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2009-03-09 |
westcott | fixed valid parameters to include shared parameter... |
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2009-02-24 |
westcott | changed unifrac.weighted() |
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2009-02-18 |
ryabin | Added get.line command. |
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2009-02-18 |
westcott | minor bugs fixes and added line and label options to... |
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2009-02-13 |
westcott | minor error checking fixes |
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2009-02-13 |
westcott | added read.shared, broke up globaldata a bit |
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2009-02-12 |
westcott | fixed bug with displaying info for collect.shared(... |
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2009-02-11 |
westcott | added errorchecking and help info on new unifrac and... |
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2009-02-11 |
westcott | adding treeclimber and unifrac pieces |
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2009-01-28 |
westcott | fixed line and label bug. |
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2009-01-28 |
westcott | rarefaction default bug |
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2009-01-28 |
pschloss | I've changed the listfile, sabundfile, etc. option... |
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2009-01-26 |
westcott | fixed summary.shared bug and set jumble default to 1. |
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2009-01-22 |
westcott | finishing the container classes, combining read.otu... |
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2009-01-21 |
westcott | deconvolute command |
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2009-01-20 |
westcott | changed read.shared to read.list and incorporated the... |
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2009-01-16 |
westcott | Initial revision |
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