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convert BLAT psl to SAM.
2009-07-30 Heng Liconvert BLAT psl to SAM.
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2009-07-30 Heng Li * samtools-0.1.5-17 (r422)
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2009-07-30 Heng Li * samtools-0.1.5-16 (r421)
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2009-07-29 Heng Lido not set "read 1" if reads are not mapped in the...
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2009-07-28 Heng Li * samtools-0.1.5-15 (r419)
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2009-07-24 Heng Liskip @header lines in SAM
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2009-07-24 Heng Li * samtools-0.1.5-14 (r417)
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2009-07-24 Heng Li * samtools-0.1.5-17 (r416)
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2009-07-24 Heng Li * samtools-0.1.5-12 (r415)
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2009-07-22 Heng Lifixed a compiling error (thank Ken for fixing it)
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2009-07-21 Heng LiImplemented Boyer-Moore search in the kstring library.
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2009-07-17 Heng Lido not include knetfile.h when _USE_KNETFILE is not...
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2009-07-17 Heng Li * samtools-0.1.5-11 (r408)
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2009-07-17 Heng Li * samtools-0.1.5-10 (r407)
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2009-07-16 Heng LiSorry. The old Makefile is for PDCurses...
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2009-07-16 Heng Li * samtools-0.1.5-9 (r405)
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2009-07-16 Heng Li * samtools-0.1.5-8 (r404)
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2009-07-16 Heng Li * samtools-0.1.5-7 (r403)
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2009-07-16 Heng Li * samtools-0.1.5-6 (r402)
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2009-07-13 Heng Li * move bam_lite.c to bam-lite
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2009-07-13 Heng Li * samtools-0.1.5-5 (r395)
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2009-07-12 Heng Li * samtools-0.1.5-4 (r394)
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2009-07-12 Heng Li * samtools-0.1.5-3 (r393)
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2009-07-12 Heng LiRemove the warning in tview
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2009-07-12 Heng Li * samtools-0.1.5-2 (r391)
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2009-07-09 Heng Li * samtools-0.1.5-1 (r390)
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2009-07-07 Heng LiRelease samtools-0.1.5c (fixed a bug in piping)
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2009-07-07 Heng LiRelease samtools-0.1.5b (BUG! so embarrassing!)
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2009-07-07 Heng LiRelease samtools-0.1.5a (for compatibility with Bio...
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2009-07-07 Heng LiRelease samtools-0.1.5
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2009-07-07 Heng Li * samtools-0.1.4-23 (r372)
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2009-07-07 Heng Liupdate documentation
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2009-07-02 Heng Li * samtools-0.1.4-22 (r369)
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2009-07-02 Heng Li * samtools-0.1.4-21 (r368)
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2009-06-30 Heng Lireduce the chance of blocking in FTP connection
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2009-06-30 Heng Liminor changes to knetfile: invalid fd equals -1 rather...
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2009-06-30 Heng Li * samtools-0.1.4-20 (r365)
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2009-06-30 Heng Li * samtools-0.1.4-19 (r364)
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2009-06-29 Heng Li * samtools-0.1.4-18 (r363)
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2009-06-25 Heng Liwrite changelog
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2009-06-25 Heng Li * samtools-0.1.4-17 (r361)
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2009-06-25 Heng Li * samtools-0.1.4-16 (r360)
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2009-06-25 Heng Lifixed bugs in knetfile.*
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2009-06-25 Heng Lithis is the header file
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2009-06-25 Heng Li * open a file at FTP
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2009-06-24 Heng Li * samtools-0.1.4-15 (r354)
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2009-06-17 Heng Li * samtools-0.1.4-13 (r351)
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2009-06-16 Heng Li * samtools-0.1.4-13 (r350)
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2009-06-13 Heng Li * samtools-0.1.4-12 (r347)
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2009-06-13 Heng Li * samtools-0.1.4-11 (r346)
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2009-06-13 Heng Liadded more comments
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2009-06-13 Heng Linothing really
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2009-06-13 Heng Liadded an example of calculating read depth
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2009-06-13 Heng Li * samtools-0.1.4-10 (r341)
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2009-06-13 Heng Li * samtools-0.1.4-9 (r340)
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2009-06-13 Heng Liupdate INSTALL
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2009-06-12 Heng Li * samtools-0.1.4-8 (r338)
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2009-06-12 Heng Li * samtools-0.1.4-7 (r337)
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2009-06-12 Heng Li * no changes to samtools itself
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2009-06-12 Heng Liremove zlib for simplification...
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2009-06-12 Heng Li * samtools-0.1.4-6 (r334)
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2009-06-12 Heng Liupdate ChangeLog
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2009-06-12 Heng Lifixed minor things in Makefile
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2009-06-12 Heng Li * samtools-0.1.4-5 (r3310
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2009-06-12 Heng Liupdate information...
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2009-06-12 Heng Li * updated novoalign converter by Colin Hercus et al.
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2009-06-12 Heng Li * update Makefile
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2009-06-12 Heng Li * added zlib-1.2.3 as razip requires that
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2009-06-12 Heng LiUnfinished
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2009-06-10 Heng Li * samtools-0.1.4-4 (r325)
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2009-06-10 Heng Li * samtools-0.1.4-3 (r324)
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2009-06-10 Heng Li * samtools.pl-0.3.2 (r322)
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2009-06-10 Heng Lifixed a typo
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2009-06-09 Heng Lijust typo. no real change
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2009-06-08 Heng Lia little bit code cleanup
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2009-06-08 Heng Li * samtools.pl-0.3.1
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2009-06-08 Heng Li * samtools.pl-0.3.0
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2009-06-08 Heng Li * samtools.pl-0.2.3
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2009-06-08 Heng Li * samtools-0.1.4-2 (r316)
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2009-06-04 Heng Li * samtools.pl-0.2.2
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2009-06-03 Heng Li * in snpFilter, suppress non-SNP sites
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2009-06-01 Heng Li * samtools.pl-0.2.1
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2009-06-01 Heng Li * samtools.pl-0.2.0
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2009-05-28 Heng Li * minor changes to bgzf: return NULL if fd == -1
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2009-05-28 Heng LiScript for paired-end pileup, contributed by Stephen...
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2009-05-28 Heng Li * samtools-0.1.4-1 (r304)
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2009-05-21 Heng LiRelease samtools-0.1.4
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2009-05-21 Heng Li * samtools-0.1.3-24 (r296)
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2009-05-21 Heng Li * samtools-0.1.3-23 (r295)
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2009-05-20 Heng Liadded a missing header file
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2009-05-19 Heng Li * samtools-0.1.3-22 (r293)
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2009-05-18 Heng LiAdded a note to the manual. Currently SAMtools used...
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2009-05-14 Heng Li * samtools-0.1.3-21 (286)
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2009-05-13 Heng Li * samtools-0.1.3-20 (r276)
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2009-05-12 Heng Li * samtools-0.1.3-19 (r275)
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2009-05-12 Heng Li * samtools-0.1.3-18 (r273)
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2009-05-12 Heng Lichange a parameter. It does nothing
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2009-05-12 Heng Li * samtools-0.1.3-17 (r271)
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2009-05-05 Heng Li * samtools-0.1.3-16 (r267)
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2009-05-05 Heng Li * samtools-0.1.3-15 (r266)
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