#include "bam.h"
#ifndef PACKAGE_VERSION
-#define PACKAGE_VERSION "0.1.4-13 (r350)"
+#define PACKAGE_VERSION "0.1.4-14 (r351)"
#endif
int bam_taf2baf(int argc, char *argv[]);
name = 0; l_name = m_name = 0;
len = line_len = line_blen = -1; state = 0; l1 = l2 = -1; offset = 0;
while (razf_read(rz, &c, 1)) {
+ if (c == '\n') { // an empty line
+ if (state == 1) {
+ offset = razf_tell(rz);
+ continue;
+ } else if ((state == 0 && len < 0) || state == 2) continue;
+ }
if (c == '>') { // fasta header
if (len >= 0)
fai_insert_index(idx, name, len, line_len, line_blen, offset);