]> git.donarmstrong.com Git - samtools.git/history - misc
Reverted to the previous behaviour, the unmapped reads are not removed. Added -r...
[samtools.git] / misc /
2012-04-24 Petr Danecekinit_regions: check for non-matching sequence names
2012-04-23 Petr DanecekResolved merge conflict
2012-04-23 Petr DanecekIndexed access can be now combined with target regions...
2012-04-17 Heng Lichange getline() to mygetline()
2012-04-12 Petr DanecekAdded check for out-of-bounds indels at the end of...
2012-04-04 Petr DanecekRemoved glibc dependency (getline)
2012-04-04 Petr DanecekMerge remote branch 'main/master'
2012-03-29 Heng LiMerge branch 'master' of github.com:samtools/samtools...
2012-03-29 samtoolsMerge pull request #2 from peterjc/depad
2012-03-29 Petr DanecekCompile cleanly from top-level Makefile. Check for...
2012-03-29 Petr DanecekCompile cleanly from top-level Makefile. Check for...
2012-03-28 Petr DanecekAdded rule for bamcheck creation
2012-03-28 Petr DanecekAdded rule for bamcheck creation
2012-03-27 Petr DanecekInitial release of bamcheck and plot-bamcheck
2012-03-27 Petr DanecekInitial release of bamcheck and plot-bamcheck
2012-03-24 Heng Limove seqtk to a separate project
2012-03-09 Heng LiTwo auxilary Lua scripts
2011-09-28 Heng Liunpadded output
2011-09-23 Heng Liadded the ace2sam converter
2011-09-02 Heng Li * Updated samtools to the latest
2011-03-18 Heng Liexport2sam.pl-2.3.1, provided by Chris Saunders from...
2010-11-15 Heng Li * samtools-0.1.9-16 (r822)
2010-10-01 Heng LiI am changing the gap open probability back to 0.001...
2010-10-01 Heng Li * samtools-0.1.8-17 (r760)
2010-09-16 Heng Li * added varFilter to vcfutils.pl
2010-07-13 Heng Li * samtools-0.1.8-1 (r615)
2010-07-08 Heng Liremoved a debugging example
2010-07-02 Heng Lifixed a minor bug in idxstats
2010-06-11 Heng Li * samtools-0.1.7-7 (r584)
2010-06-11 Petr DanecekInitial release on behalf of Aylwyn Scally
2010-04-23 Petr DanecekAdded the possibility to print or not to print the...
2010-04-14 Petr DanecekSpeedup with -i, no need to query the reference all...
2010-03-04 Petr DanecekAdded possibility to select indels only and fixed a...
2010-02-24 Heng LiUpdated export2sam.pl by Chris Saunders from Illumina.
2010-02-17 Petr DanecekFixed filtering of SNPs near indels. Added min indel...
2010-02-12 Petr DanecekPrint an error for pileups in simple format
2010-02-09 Petr DanecekAdded possibility to specify a custom column title...
2010-02-03 Petr DanecekAdded VCF header
2010-02-01 Heng Li * samtools-0.1.7-6
2009-12-11 Petr DanecekSmall fix in VCF format: dot for the empty INFO field
2009-12-01 Heng Li * samtools-0.1.7-2 (r520)
2009-11-30 On behalf of John... Also clean *.exe (for Cygwin users using this makefile).
2009-11-27 Heng Li * samtools-0.1.7-1 (r515)
2009-10-18 Heng Liadded a small unitity to parse SRA XML files
2009-10-09 Petr DanecekAdded the sam2vcf.pl script.
2009-10-02 Heng LiFixed minor bugs in novo2sam.pl (on behalf of Ken Chen...
2009-09-28 Heng Li * samtools-0.1.6-7 (r468)
2009-08-29 Heng Li * samtools-0.1.5-32 (r449)
2009-08-19 Heng Li * samtools-0.1.5-31 (r448)
2009-08-07 Heng Li * samtools-0.1.5-26 (r442)
2009-08-04 Heng Lifixed a SERIOUS bug in setting 0x20 flag
2009-08-04 Heng Lifixed two minor bugs (suggested by Tim M Storm)
2009-08-04 Heng Li * samtools-0.1.5-24 (r435)
2009-07-31 Heng Li * samtools-0.1.5-18 (r423)
2009-07-30 Heng Liconvert BLAT psl to SAM.
2009-07-30 Heng Li * samtools-0.1.5-16 (r421)
2009-07-29 Heng Lido not set "read 1" if reads are not mapped in the...
2009-07-28 Heng Li * samtools-0.1.5-15 (r419)
2009-07-24 Heng Liskip @header lines in SAM
2009-06-12 Heng Li * no changes to samtools itself
2009-06-12 Heng Lifixed minor things in Makefile
2009-06-12 Heng Li * updated novoalign converter by Colin Hercus et al.
2009-06-12 Heng Li * update Makefile
2009-06-12 Heng Li * added zlib-1.2.3 as razip requires that
2009-06-12 Heng LiUnfinished
2009-06-10 Heng Li * samtools.pl-0.3.2 (r322)
2009-06-10 Heng Lifixed a typo
2009-06-09 Heng Lijust typo. no real change
2009-06-08 Heng Lia little bit code cleanup
2009-06-08 Heng Li * samtools.pl-0.3.1
2009-06-08 Heng Li * samtools.pl-0.3.0
2009-06-08 Heng Li * samtools.pl-0.2.3
2009-06-04 Heng Li * samtools.pl-0.2.2
2009-06-03 Heng Li * in snpFilter, suppress non-SNP sites
2009-06-01 Heng Li * samtools.pl-0.2.1
2009-06-01 Heng Li * samtools.pl-0.2.0
2009-05-28 Heng LiScript for paired-end pileup, contributed by Stephen...
2009-05-21 Heng LiRelease samtools-0.1.4
2009-04-28 Heng Liimprove large file support in compilation
2009-04-28 Heng Lifixed various issues about the GNU building scripts
2009-04-28 Heng Li * samtools-0.1.3-7 (r246)
2009-04-15 Heng Liconvert NCBI-BLASTN to SAM
2009-04-14 Heng Li * samtools.pl-0.1.1
2009-04-08 Heng Li * samtools-0.1.2-21
2009-04-08 Heng Limake the script robust to the bugs in SOAP-2.1.7
2009-03-24 Heng Lirename Makefile.std as Makefile. GNU building systerm...
2009-03-24 Heng Li * samtools-0.1.2-17
2009-03-12 Heng Li * soap2sam.pl-0.1.2
2009-03-10 Heng Li * samtools-0.1.2-14
2009-03-01 Heng Li * wgsim-0.2.3
2009-02-26 Heng Li * wgsim-0.2.2
2009-02-26 Heng Li * wgsim-0.2.1
2009-02-26 Heng Li * wgsim: added a note
2009-02-26 Heng Li * wgsim-0.2.0
2009-02-17 Heng Li * move indel_filter.pl to samtools.pl
2009-02-12 Heng Li * samtools-0.1.2-6
2009-02-11 Heng Lifixed a bug in generating tag AM
2009-01-28 Heng LiScript for filtering indel results
2009-01-25 Heng Liconvert ZOOM to SAM
2009-01-24 Heng Liadd a script to convert novo alignment to SAM
next